FFCP PHASE1:Mm9::chr9:62659673..62659762,-: Difference between revisions
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{{FFCP|EntrezGene=14155|HGNC=|UniProt=Q9Z2G0|association_with_transcript=-218bp_to_ENSMUST00000034775,NM_010193,uc009qam.2_5end|description=CAGE_peak_1_at_Fem1b_5end|id=chr9:62659673..62659762,-|ontology_enrichment_celltype=CL:0000117!4.66e-10!23;CL:0000337!4.66e-10!23;CL:0000540!5.22e-09!33;CL:0000047!5.22e-09!33;CL:0000031!5.22e-09!33;CL:0000404!5.22e-09!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.66e-10,23;CL:0000337,4.66e-10,23;CL:0000540,5.22e-09,33;CL:0000047,5.22e-09,33;CL:0000031,5.22e-09,33;CL:0000404,5.22e-09,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0003056!2.91e-14!49;UBERON:0004121!5.17e-14!102;UBERON:0000924!5.17e-14!102;UBERON:0006601!5.17e-14!102;UBERON:0002346!1.21e-13!71;UBERON:0003075!1.21e-13!71;UBERON:0007284!1.21e-13!71;UBERON:0000033!2.26e-12!63;UBERON:0001049!7.43e-12!52;UBERON:0005068!7.43e-12!52;UBERON:0006241!7.43e-12!52;UBERON:0007135!7.43e-12!52;UBERON:0001017!2.16e-11!73;UBERON:0005743!2.16e-11!73;UBERON:0003080!2.61e-11!40;UBERON:0002780!5.85e-11!39;UBERON:0001890!5.85e-11!39;UBERON:0006240!5.85e-11!39;UBERON:0000955!1.22e-10!50;UBERON:0006238!1.22e-10!50;UBERON:0000073!1.23e-10!75;UBERON:0001016!1.23e-10!75;UBERON:0002020!1.74e-10!34;UBERON:0002616!2.17e-10!49;UBERON:0002791!1.11e-08!29;UBERON:0003528!1.11e-08!29;UBERON:0001893!1.11e-08!29;UBERON:0000153!1.84e-08!94;UBERON:0007811!3.94e-07!86|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.84e-16,73;UBERON:0002346,7.23e-15,64;UBERON:0003075,7.23e-15,64;UBERON:0007284,7.23e-15,64;UBERON:0004121,8.82e-15,95;UBERON:0000924,8.82e-15,95;UBERON:0006601,8.82e-15,95;UBERON:0003056,2.91e-14,49;UBERON:0000073,3.30e-12,54;UBERON:0001049,7.43e-12,52;UBERON:0005068,7.43e-12,52;UBERON:0006241,7.43e-12,52;UBERON:0007135,7.43e-12,52;UBERON:0001017,2.16e-11,73;UBERON:0003080,2.61e-11,40;UBERON:0002780,5.85e-11,39;UBERON:0001890,5.85e-11,39;UBERON:0006240,5.85e-11,39;UBERON:0010314,7.33e-11,92;UBERON:0001016,1.23e-10,75;UBERON:0002020,1.74e-10,34;UBERON:0000955,2.69e-10,47;UBERON:0006238,2.69e-10,47;UBERON:0002616,4.76e-10,46;UBERON:0003528,1.11e-08,29;UBERON:0002791,1.11e-08,29;UBERON:0001893,1.11e-08,29|phase1_expression=24.3426247599287,6.2815573375085,8.18998630901165,6.65421264875026,8.5152274090879,14.1018588405987,12.6150825921584,17.0442786942881,19.5696323790817,19.4273556847255,12.4989116804619,16.353292594044,12.3264525550468,15.2985704233245,16.9885978525988,10.9336644390506,13.2916756844348,9.46386496074713,11.1062691220648,7.63901373236454,11.5658874605455,16.5815888505478,7.83599367416806,8.31960598525715,8.25873411841812,5.16808767703518,6.8921919385452,8.40337807474967,4.75058548640935,10.0812051903972,11.3082560434205,82.5539875497521,108.251402614884,110.937176710807,18.4865036640816,16.6234645358492,14.0876855821035,4.60384793810598,7.813353445238,6.28228492768558,2.94115744015507,4.09827290975067,2.42755176515577,17.7514513345564,16.1189320639028,17.8040349596831,5.47673941043627,11.9913836009246,12.5221124158649,13.9989527333484,12.4587915246573,7.18762821824858,14.2615215149076,14.5072428402269,13.4437519656986,14.406528418013,12.8940047972441,16.5015069528782,63.7296851707733,68.2398363260922,56.4109949120499,9.82649143000483,6.22506357277798,10.7987966073768,10.8775299882367,7.8152812644071,8.08920298399693,10.373894243682,46.0381878649641,44.5519596494579,55.3154648354135,25.9942395807461,25.3998822094356,43.3617429220937,47.0601262699541,34.9303138911808,25.3266526298594,25.4097802789524,27.3419629196113,74.5157525675595,83.8026815398072,59.3841242434706,21.7762739221077,28.138130501584,29.1844653253707,50.6761167014708,47.2673980253022,72.1365855343913,14.4637029266382,15.9455991825317,11.3047150593654,8.60423876981386,16.9992833426938,4.85732872474035,5.84798775702902,5.37632264516803,11.6568868709354,7.6693645160126,7.79358013808606,9.18682893726885,23.0983208433756,8.98285341900225,0,7.11066703153331,15.3708639117962,11.1478340809043,12.1325866803548,8.79215873836762,4.40194402200192,14.9926560455473,34.1766093729288,23.4438418300349,24.2146272118861,16.5794904607885,20.695612455884,15.0799909595611,212.834867219296,10.7003524120735,6.19227386364912,26.2062296914803,16.7839554029899,11.6370060752453,14.9113408974498,24.0080253549469,23.0391377494801,11.4955674843866,17.1335628043466,11.3981518888747,18.4251829255944,31.9054061932272,27.9075367719362,58.429273732482,35.6339856394167,34.010155824934,24.7267773025876,28.8789448260609,27.8021463311363,12.5651040316194,9.09801930361229,16.414464759145,42.159023519916,33.7956093517205,43.5750354128945,30.8944876563216,39.5292060069215,38.9465709665943,42.8216881237961,29.2334808935088,42.4668946077699,33.471776189704,30.967397852855,42.5239720909495,32.531528159395,22.984642990463,31.0731025975995,32.4425854914144,20.3641824320838,8.4924809347856,14.4923384691752,30.2403627901833,26.735970837845,23.4080679899319,27.2256445922992,23.2181793461937,21.4431286913456,18.1376476905318,20.9253253091703,16.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=14155 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q9Z2G0 | |||
|association_with_transcript=-218bp_to_ENSMUST00000034775,NM_010193,uc009qam.2_5end | |||
|cluster_id=chr9:62659673..62659762,- | |||
|description=CAGE_peak_1_at_Fem1b_5end | |||
|id=chr9:62659673..62659762,- | |||
|ontology_enrichment_celltype=CL:0000117!4.66e-10!23;CL:0000337!4.66e-10!23;CL:0000540!5.22e-09!33;CL:0000047!5.22e-09!33;CL:0000031!5.22e-09!33;CL:0000404!5.22e-09!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.66e-10,23;CL:0000337,4.66e-10,23;CL:0000540,5.22e-09,33;CL:0000047,5.22e-09,33;CL:0000031,5.22e-09,33;CL:0000404,5.22e-09,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0003056!2.91e-14!49;UBERON:0004121!5.17e-14!102;UBERON:0000924!5.17e-14!102;UBERON:0006601!5.17e-14!102;UBERON:0002346!1.21e-13!71;UBERON:0003075!1.21e-13!71;UBERON:0007284!1.21e-13!71;UBERON:0000033!2.26e-12!63;UBERON:0001049!7.43e-12!52;UBERON:0005068!7.43e-12!52;UBERON:0006241!7.43e-12!52;UBERON:0007135!7.43e-12!52;UBERON:0001017!2.16e-11!73;UBERON:0005743!2.16e-11!73;UBERON:0003080!2.61e-11!40;UBERON:0002780!5.85e-11!39;UBERON:0001890!5.85e-11!39;UBERON:0006240!5.85e-11!39;UBERON:0000955!1.22e-10!50;UBERON:0006238!1.22e-10!50;UBERON:0000073!1.23e-10!75;UBERON:0001016!1.23e-10!75;UBERON:0002020!1.74e-10!34;UBERON:0002616!2.17e-10!49;UBERON:0002791!1.11e-08!29;UBERON:0003528!1.11e-08!29;UBERON:0001893!1.11e-08!29;UBERON:0000153!1.84e-08!94;UBERON:0007811!3.94e-07!86 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,1.84e-16,73;UBERON:0002346,7.23e-15,64;UBERON:0003075,7.23e-15,64;UBERON:0007284,7.23e-15,64;UBERON:0004121,8.82e-15,95;UBERON:0000924,8.82e-15,95;UBERON:0006601,8.82e-15,95;UBERON:0003056,2.91e-14,49;UBERON:0000073,3.30e-12,54;UBERON:0001049,7.43e-12,52;UBERON:0005068,7.43e-12,52;UBERON:0006241,7.43e-12,52;UBERON:0007135,7.43e-12,52;UBERON:0001017,2.16e-11,73;UBERON:0003080,2.61e-11,40;UBERON:0002780,5.85e-11,39;UBERON:0001890,5.85e-11,39;UBERON:0006240,5.85e-11,39;UBERON:0010314,7.33e-11,92;UBERON:0001016,1.23e-10,75;UBERON:0002020,1.74e-10,34;UBERON:0000955,2.69e-10,47;UBERON:0006238,2.69e-10,47;UBERON:0002616,4.76e-10,46;UBERON:0003528,1.11e-08,29;UBERON:0002791,1.11e-08,29;UBERON:0001893,1.11e-08,29 | |||
|phase1_expression=24.3426247599287,6.2815573375085,8.18998630901165,6.65421264875026,8.5152274090879,14.1018588405987,12.6150825921584,17.0442786942881,19.5696323790817,19.4273556847255,12.4989116804619,16.353292594044,12.3264525550468,15.2985704233245,16.9885978525988,10.9336644390506,13.2916756844348,9.46386496074713,11.1062691220648,7.63901373236454,11.5658874605455,16.5815888505478,7.83599367416806,8.31960598525715,8.25873411841812,5.16808767703518,6.8921919385452,8.40337807474967,4.75058548640935,10.0812051903972,11.3082560434205,82.5539875497521,108.251402614884,110.937176710807,18.4865036640816,16.6234645358492,14.0876855821035,4.60384793810598,7.813353445238,6.28228492768558,2.94115744015507,4.09827290975067,2.42755176515577,17.7514513345564,16.1189320639028,17.8040349596831,5.47673941043627,11.9913836009246,12.5221124158649,13.9989527333484,12.4587915246573,7.18762821824858,14.2615215149076,14.5072428402269,13.4437519656986,14.406528418013,12.8940047972441,16.5015069528782,63.7296851707733,68.2398363260922,56.4109949120499,9.82649143000483,6.22506357277798,10.7987966073768,10.8775299882367,7.8152812644071,8.08920298399693,10.373894243682,46.0381878649641,44.5519596494579,55.3154648354135,25.9942395807461,25.3998822094356,43.3617429220937,47.0601262699541,34.9303138911808,25.3266526298594,25.4097802789524,27.3419629196113,74.5157525675595,83.8026815398072,59.3841242434706,21.7762739221077,28.138130501584,29.1844653253707,50.6761167014708,47.2673980253022,72.1365855343913,14.4637029266382,15.9455991825317,11.3047150593654,8.60423876981386,16.9992833426938,4.85732872474035,5.84798775702902,5.37632264516803,11.6568868709354,7.6693645160126,7.79358013808606,9.18682893726885,23.0983208433756,8.98285341900225,0,7.11066703153331,15.3708639117962,11.1478340809043,12.1325866803548,8.79215873836762,4.40194402200192,14.9926560455473,34.1766093729288,23.4438418300349,24.2146272118861,16.5794904607885,20.695612455884,15.0799909595611,212.834867219296,10.7003524120735,6.19227386364912,26.2062296914803,16.7839554029899,11.6370060752453,14.9113408974498,24.0080253549469,23.0391377494801,11.4955674843866,17.1335628043466,11.3981518888747,18.4251829255944,31.9054061932272,27.9075367719362,58.429273732482,35.6339856394167,34.010155824934,24.7267773025876,28.8789448260609,27.8021463311363,12.5651040316194,9.09801930361229,16.414464759145,42.159023519916,33.7956093517205,43.5750354128945,30.8944876563216,39.5292060069215,38.9465709665943,42.8216881237961,29.2334808935088,42.4668946077699,33.471776189704,30.967397852855,42.5239720909495,32.531528159395,22.984642990463,31.0731025975995,32.4425854914144,20.3641824320838,8.4924809347856,14.4923384691752,30.2403627901833,26.735970837845,23.4080679899319,27.2256445922992,23.2181793461937,21.4431286913456,18.1376476905318,20.9253253091703,16.5806786161381,25.5067767365895,18.3867559768587,20.4293400055556,16.8129985539132,20.4181607220677,14.091673969839,34.2772616159527,57.9352967695371,8.92130714056255,13.2225283331772,33.9128318351022,28.7973473106944,27.577636722928,19.9666689377109,22.237804384487,18.8323369851434,17.5575752771469,21.5755630688454,20.3581519128218,18.3039954277859,19.1064805376738,16.178749355776,10.3746263939853,11.5501938487533,33.0022147658362,31.3040924550657,33.8123207019241,25.4564159806643,23.6622034344503,29.4570443539338,22.2592610677386,18.1560482014911,11.9319033159445,11.8461277364928,7.11486305009157,29.3647386060326,28.107936301188,23.6105218004096,28.4004169943904,26.7706647325183,25.7172110299234,27.0434369203762,17.9970101720289,15.3754391385326,33.0666875012915,15.6299198020771,16.5379966750717,10.1031551178845,12.19902411949,9.16642690590398,21.2466168691595,30.1291344715071,29.9855556653328,33.7792720692624,27.9281395463317,26.9685074481323,30.2315423925237,36.0997248536928,22.2265553189729,22.1464689648775,27.9045845150602,18.8442811923099,22.7944176062982,18.370430439852,13.5712155545345,11.9659250440116,23.6046851049137,20.6952559728549,29.0596567877903,28.0135930955366,27.8689407140348,15.6531974866711,22.7165917979705,24.5976408906882,25.4199609324703,22.2240982095873,24.7306528231457,26.8922704249391,22.6693992937941,23.0882127749936,21.7408277870588,28.9189184779626,21.5748929516568,22.2582004584069,29.971200521058,19.7964147567043,15.9294166007955,33.2609471532325,28.4184143546866,24.3300552885109,15.0603965369194,19.3684143204674,22.4832615056352,24.3567598749929,22.8158322166222,16.4339114126624,11.5960469432499,7.21948802737308,25.8734100372879,32.7711191136985,25.2249433376371,34.0795885700232,29.793159251902,34.6035506148017,32.0870590174136,25.5750557256263,48.1077001530606,58.0419874166867,10.8058915046931,23.5787341706316,29.8709189387425,42.0984215998528,45.9583524412075,57.7775967102616,18.6547735443104,24.2907145633768,15.036637510211,26.004745363366,21.2973706475168,18.6484772434644,19.0004976532225,15.7856939512501,29.5762468189308,22.8120867287563,24.3231953895786,4.77335309007557,40.6491751751759,27.448128062124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| |||
|short_description=p1@Fem1b | |||
}} |
Latest revision as of 23:32, 26 September 2015
Short description: | p1@Fem1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Fem1b_5end |
Coexpression cluster: | NA |
Association with transcript: | -218bp_to_ENSMUST00000034775, NM_010193, uc009qam.2_5end |
EntrezGene: | Fem1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.66e-10 | 23 |
neuroblast (sensu Vertebrata) | 4.66e-10 | 23 |
neuron | 5.22e-09 | 33 |
neuronal stem cell | 5.22e-09 | 33 |
neuroblast | 5.22e-09 | 33 |
electrically signaling cell | 5.22e-09 | 33 |
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 1.84e-16 | 73 |
neurectoderm | 7.23e-15 | 64 |
neural plate | 7.23e-15 | 64 |
presumptive neural plate | 7.23e-15 | 64 |
ectoderm-derived structure | 8.82e-15 | 95 |
ectoderm | 8.82e-15 | 95 |
presumptive ectoderm | 8.82e-15 | 95 |
pre-chordal neural plate | 2.91e-14 | 49 |
regional part of nervous system | 3.30e-12 | 54 |
neural tube | 7.43e-12 | 52 |
neural rod | 7.43e-12 | 52 |
future spinal cord | 7.43e-12 | 52 |
neural keel | 7.43e-12 | 52 |
central nervous system | 2.16e-11 | 73 |
anterior neural tube | 2.61e-11 | 40 |
regional part of forebrain | 5.85e-11 | 39 |
forebrain | 5.85e-11 | 39 |
future forebrain | 5.85e-11 | 39 |
structure with developmental contribution from neural crest | 7.33e-11 | 92 |
nervous system | 1.23e-10 | 75 |
gray matter | 1.74e-10 | 34 |
brain | 2.69e-10 | 47 |
future brain | 2.69e-10 | 47 |
regional part of brain | 4.76e-10 | 46 |
brain grey matter | 1.11e-08 | 29 |
regional part of telencephalon | 1.11e-08 | 29 |
telencephalon | 1.11e-08 | 29 |