FFCP PHASE1:Mm9::chr9:57385390..57385441,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr9:57385390..57385441,+
|short_description=p1@2310046O06Rik
|description=CAGE_peak_1_at_2310046O06Rik_5end
|association_with_transcript=55bp_to_ENSMUST0000009...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=78323 | |EntrezGene=78323 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=286 | |||
|TSSclassifier=NA | |||
|UniProt=Q14DQ1 | |UniProt=Q14DQ1 | ||
|association_with_transcript=55bp_to_ENSMUST00000093833,ENSMUST00000114200,NM_001166364,NM_175273,uc009pva.2,uc009pvb.2_5end | |||
|cluster_id=chr9:57385390..57385441,+ | |||
|description=CAGE_peak_1_at_2310046O06Rik_5end | |||
|id=chr9:57385390..57385441,+ | |||
|ontology_enrichment_celltype=CL:0000055!1.97e-12!50;CL:0000221!2.40e-12!44;CL:0000133!2.40e-12!44;CL:0002319!5.78e-12!43;CL:0002321!2.98e-10!70;CL:0000220!2.98e-10!70;CL:0000393!1.74e-09!39;CL:0000211!1.74e-09!39;CL:0000723!1.80e-09!91;CL:0000048!1.80e-09!91;CL:0000117!2.30e-09!23;CL:0000337!2.30e-09!23;CL:0000540!1.43e-08!33;CL:0000047!1.43e-08!33;CL:0000031!1.43e-08!33;CL:0000404!1.43e-08!33;CL:0000548!2.66e-08!115;CL:0000004!2.66e-08!115;CL:0000255!2.66e-08!115;CL:0002371!6.00e-08!118;CL:0000144!7.49e-07!121;CL:0000012!7.49e-07!121;CL:0000034!7.84e-07!97 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.40e-12,44;CL:0000133,2.40e-12,44;CL:0002319,5.78e-12,43;CL:0002321,2.80e-10,70;CL:0000393,1.74e-09,39;CL:0000211,1.74e-09,39;CL:0000723,1.76e-09,91;CL:0000048,1.76e-09,91;CL:0000117,2.30e-09,23;CL:0000337,2.30e-09,23;CL:0000540,1.43e-08,33;CL:0000047,1.43e-08,33;CL:0000031,1.43e-08,33;CL:0000404,1.43e-08,33;CL:0000034,7.72e-07,97 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.70e-13!73;UBERON:0005743!4.70e-13!73;UBERON:0000073!8.82e-13!75;UBERON:0001016!8.82e-13!75;UBERON:0004121!2.33e-11!102;UBERON:0000924!2.33e-11!102;UBERON:0006601!2.33e-11!102;UBERON:0002020!5.31e-10!34;UBERON:0001049!2.44e-09!52;UBERON:0005068!2.44e-09!52;UBERON:0006241!2.44e-09!52;UBERON:0007135!2.44e-09!52;UBERON:0002346!2.19e-08!71;UBERON:0003075!2.19e-08!71;UBERON:0007284!2.19e-08!71;UBERON:0000955!1.27e-07!50;UBERON:0006238!1.27e-07!50;UBERON:0002791!1.90e-07!29;UBERON:0003528!1.90e-07!29;UBERON:0001893!1.90e-07!29;UBERON:0002616!2.54e-07!49;UBERON:0002780!2.59e-07!39;UBERON:0001890!2.59e-07!39;UBERON:0006240!2.59e-07!39;UBERON:0003080!6.19e-07!40;UBERON:0000033!6.56e-07!63 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.69e-13,73;UBERON:0001016,8.81e-13,75;UBERON:0004121,5.19e-11,95;UBERON:0000924,5.19e-11,95;UBERON:0006601,5.19e-11,95;UBERON:0002020,5.30e-10,34;UBERON:0000073,1.38e-09,54;UBERON:0001049,2.44e-09,52;UBERON:0005068,2.44e-09,52;UBERON:0006241,2.44e-09,52;UBERON:0007135,2.44e-09,52;UBERON:0002346,3.67e-08,64;UBERON:0003075,3.67e-08,64;UBERON:0007284,3.67e-08,64;UBERON:0010371,4.74e-08,73;UBERON:0003528,1.90e-07,29;UBERON:0002791,1.90e-07,29;UBERON:0001893,1.90e-07,29;UBERON:0000955,1.92e-07,47;UBERON:0006238,1.92e-07,47;UBERON:0002780,2.58e-07,39;UBERON:0001890,2.58e-07,39;UBERON:0006240,2.58e-07,39;UBERON:0002616,3.82e-07,46;UBERON:0003080,6.19e-07,40 | |||
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| ||
|short_description=p1@2310046O06Rik | |||
}} | }} |
Latest revision as of 21:33, 26 September 2015
Short description: | p1@2310046O06Rik |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_2310046O06Rik_5end |
Coexpression cluster: | MCL_coexpression_mm9:286 |
Association with transcript: | 55bp_to_ENSMUST00000093833, ENSMUST00000114200, NM_001166364, NM_175273, uc009pva.2, uc009pvb.2_5end |
EntrezGene: | 2310046O06Rik |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.40e-12 | 44 |
neurectodermal cell | 2.40e-12 | 44 |
neural cell | 5.78e-12 | 43 |
embryonic cell | 2.80e-10 | 70 |
electrically responsive cell | 1.74e-09 | 39 |
electrically active cell | 1.74e-09 | 39 |
somatic stem cell | 1.76e-09 | 91 |
multi fate stem cell | 1.76e-09 | 91 |
CNS neuron (sensu Vertebrata) | 2.30e-09 | 23 |
neuroblast (sensu Vertebrata) | 2.30e-09 | 23 |
neuron | 1.43e-08 | 33 |
neuronal stem cell | 1.43e-08 | 33 |
neuroblast | 1.43e-08 | 33 |
electrically signaling cell | 1.43e-08 | 33 |
stem cell | 7.72e-07 | 97 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.69e-13 | 73 |
nervous system | 8.81e-13 | 75 |
ectoderm-derived structure | 5.19e-11 | 95 |
ectoderm | 5.19e-11 | 95 |
presumptive ectoderm | 5.19e-11 | 95 |
gray matter | 5.30e-10 | 34 |
regional part of nervous system | 1.38e-09 | 54 |
neural tube | 2.44e-09 | 52 |
neural rod | 2.44e-09 | 52 |
future spinal cord | 2.44e-09 | 52 |
neural keel | 2.44e-09 | 52 |
neurectoderm | 3.67e-08 | 64 |
neural plate | 3.67e-08 | 64 |
presumptive neural plate | 3.67e-08 | 64 |
ecto-epithelium | 4.74e-08 | 73 |
brain grey matter | 1.90e-07 | 29 |
regional part of telencephalon | 1.90e-07 | 29 |
telencephalon | 1.90e-07 | 29 |
brain | 1.92e-07 | 47 |
future brain | 1.92e-07 | 47 |
regional part of forebrain | 2.58e-07 | 39 |
forebrain | 2.58e-07 | 39 |
future forebrain | 2.58e-07 | 39 |
regional part of brain | 3.82e-07 | 46 |
anterior neural tube | 6.19e-07 | 40 |