FFCP PHASE1:Mm9::chr15:58720475..58720524,+: Difference between revisions
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{{FFCP|EntrezGene=75841|HGNC=|MCL_coexpression_id=0|UniProt=Q7TMV1|association_with_transcript=-259bp_to_ENSMUST00000036904,NM_175226,uc007vtq.2_5end|description=CAGE_peak_3_at_Rnf139_5end|id=chr15:58720475..58720524,+|ontology_enrichment_celltype=CL:0000117!2.21e-11!23;CL:0000337!2.21e-11!23|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-11,23;CL:0000337,2.21e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.80e-16!63;UBERON:0000955!1.29e-15!50;UBERON:0006238!1.29e-15!50;UBERON:0001049!3.19e-15!52;UBERON:0005068!3.19e-15!52;UBERON:0006241!3.19e-15!52;UBERON:0007135!3.19e-15!52;UBERON:0002616!3.37e-15!49;UBERON:0003056!2.20e-14!49;UBERON:0007811!5.97e-14!86;UBERON:0000153!6.24e-14!94;UBERON:0003080!2.35e-13!40;UBERON:0002020!3.01e-13!34;UBERON:0002780!4.67e-13!39;UBERON:0001890!4.67e-13!39;UBERON:0006240!4.67e-13!39;UBERON:0000073!7.00e-13!75;UBERON:0001016!7.00e-13!75;UBERON:0002346!1.05e-12!71;UBERON:0003075!1.05e-12!71;UBERON:0007284!1.05e-12!71;UBERON:0001017!1.76e-12!73;UBERON:0005743!1.76e-12!73;UBERON:0002791!3.22e-12!29;UBERON:0003528!3.22e-12!29;UBERON:0001893!3.22e-12!29;UBERON:0004121!7.14e-10!102;UBERON:0000924!7.14e-10!102;UBERON:0006601!7.14e-10!102;UBERON:0000956!1.27e-08!21;UBERON:0001869!1.27e-08!21;UBERON:0000203!1.27e-08!21;UBERON:0000025!6.57e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.02e-16,54;UBERON:0001049,3.19e-15,52;UBERON:0005068,3.19e-15,52;UBERON:0006241,3.19e-15,52;UBERON:0007135,3.19e-15,52;UBERON:0002346,5.33e-15,64;UBERON:0003075,5.33e-15,64;UBERON:0007284,5.33e-15,64;UBERON:0003056,2.20e-14,49;UBERON:0000955,6.14e-14,47;UBERON:0006238,6.14e-14,47;UBERON:0002616,1.56e-13,46;UBERON:0003080,2.35e-13,40;UBERON:0002020,3.01e-13,34;UBERON:0010371,4.65e-13,73;UBERON:0002780,4.67e-13,39;UBERON:0001890,4.67e-13,39;UBERON:0006240,4.67e-13,39;UBERON:0001016,7.00e-13,75;UBERON:0001017,1.76e-12,73;UBERON:0003528,3.22e-12,29;UBERON:0002791,3.22e-12,29;UBERON:0001893,3.22e-12,29;UBERON:0004121,2.90e-11,95;UBERON:0000924,2.90e-11,95;UBERON:0006601,2.90e-11,95;UBERON:0010314,5.35e-11,92;UBERON:0000956,1.27e-08,21;UBERON:0001869,1.27e-08,21;UBERON:0000203,1.27e-08,21;UBERON:0000025,6.59e-07,114|phase1_expression=7.36684696682052,4.18770489167233,3.18499467572675,3.0246421130683,3.00537437967808,3.86122325397347,3.27057696833736,6.45616617207881,1.40788722151667,2.34064526321993,3.76679530096111,3.82906363177615,6.33442700745461,7.95525662012876,10.3264026162855,7.08663435864391,16.0899231969474,9.77932712610537,12.066070157305,8.48779303596061,20.8356060870121,4.36880185283895,2.61199789138935,2.55987876469451,2.98232065387321,2.8711598205751,1.29228598847722,1.29282739611533,2.66032787238923,2.52030129759931,2.66076612786366,5.08024538767705,6.76571266343027,0,5.48818077527422,3.82339684324532,4.69589519403449,8.78916424547506,5.4693474116666,5.75876118371178,6.47054636834116,8.87959130445979,8.25367600152961,6.92432498865675,5.27160042341476,7.15832333430558,3.9119567217402,3.2703773457067,2.63623419281366,2.3331587888914,5.31948402176378,2.87505128729943,7.3824346665404,4.35217285206807,6.72187598284928,2.31533492432352,6.01720223871389,2.57836046138721,13.1505699558739,8.99284664762456,7.60597684207415,1.0165335962074,1.77858959222228,1.7997994345628,3.9554654502679,3.5524005747305,2.09720077362883,1.53687322128622,13.9980976616445,9.99043943654511,12.8298226424343,6.56997264128748,7.06779331045163,11.8816075238505,8.53024692062304,14.7075005857603,12.1127469099328,9.06580100404833,8.90917892886212,8.83638127792299,8.32537556781928,10.4182674111352,8.37548997004143,6.19038871034848,8.70950012327818,5.00868595305235,6.54909731675874,9.87917062874093,6.13382165998791,6.42358260907677,2.6087803983151,0,2.03991400112325,1.07940638327563,1.94932925234301,0.896053774194671,4.0728881838208,5.11290967734173,5.45550609666024,4.94675404314476,7.88723150749411,3.84979432242953,0,14.2213340630666,2.59789249213457,2.78695852022608,3.0331466700887,4.68153906848146,2.58937883647172,4.00793775475027,4.68410382268567,1.82679286987285,2.30615497256059,4.22023393547343,5.64425794251383,5.02666365318702,1.48316980640624,1.44599356919912,8.84610551949874,4.04417124868523,5.74187947997023,6.78825354389311,1.86391761218122,6.14839673724249,8.3778682725382,2.55457055208591,4.91242010474273,5.39912457894067,4.70159840170339,7.04016005202667,8.23501085073528,16.0837570704466,8.8650403298061,9.46147192122223,10.389402227978,7.94982189032012,8.86002465497752,4.85187185379363,2.27450482590307,5.05060454127538,6.11566081924707,6.66716102857071,4.68161537493908,6.17889753126432,7.00775941258677,7.55870949680614,7.96464658757695,4.9153640440413,6.25147179505242,5.67318240503458,5.27853372491847,6.1374805079721,5.00485048606076,7.66154766348766,3.70407845534298,5.57295947091781,0.702213187313235,1.54408744268829,4.54661599032948,4.55676699578104,5.8631514995274,4.32148947506436,5.20838418287463,3.73852040320067,3.39387648352232,3.9530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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=75841 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q7TMV1 | |||
|association_with_transcript=-259bp_to_ENSMUST00000036904,NM_175226,uc007vtq.2_5end | |||
|cluster_id=chr15:58720475..58720524,+ | |||
|description=CAGE_peak_3_at_Rnf139_5end | |||
|id=chr15:58720475..58720524,+ | |||
|ontology_enrichment_celltype=CL:0000117!2.21e-11!23;CL:0000337!2.21e-11!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.21e-11,23;CL:0000337,2.21e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.80e-16!63;UBERON:0000955!1.29e-15!50;UBERON:0006238!1.29e-15!50;UBERON:0001049!3.19e-15!52;UBERON:0005068!3.19e-15!52;UBERON:0006241!3.19e-15!52;UBERON:0007135!3.19e-15!52;UBERON:0002616!3.37e-15!49;UBERON:0003056!2.20e-14!49;UBERON:0007811!5.97e-14!86;UBERON:0000153!6.24e-14!94;UBERON:0003080!2.35e-13!40;UBERON:0002020!3.01e-13!34;UBERON:0002780!4.67e-13!39;UBERON:0001890!4.67e-13!39;UBERON:0006240!4.67e-13!39;UBERON:0000073!7.00e-13!75;UBERON:0001016!7.00e-13!75;UBERON:0002346!1.05e-12!71;UBERON:0003075!1.05e-12!71;UBERON:0007284!1.05e-12!71;UBERON:0001017!1.76e-12!73;UBERON:0005743!1.76e-12!73;UBERON:0002791!3.22e-12!29;UBERON:0003528!3.22e-12!29;UBERON:0001893!3.22e-12!29;UBERON:0004121!7.14e-10!102;UBERON:0000924!7.14e-10!102;UBERON:0006601!7.14e-10!102;UBERON:0000956!1.27e-08!21;UBERON:0001869!1.27e-08!21;UBERON:0000203!1.27e-08!21;UBERON:0000025!6.57e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.02e-16,54;UBERON:0001049,3.19e-15,52;UBERON:0005068,3.19e-15,52;UBERON:0006241,3.19e-15,52;UBERON:0007135,3.19e-15,52;UBERON:0002346,5.33e-15,64;UBERON:0003075,5.33e-15,64;UBERON:0007284,5.33e-15,64;UBERON:0003056,2.20e-14,49;UBERON:0000955,6.14e-14,47;UBERON:0006238,6.14e-14,47;UBERON:0002616,1.56e-13,46;UBERON:0003080,2.35e-13,40;UBERON:0002020,3.01e-13,34;UBERON:0010371,4.65e-13,73;UBERON:0002780,4.67e-13,39;UBERON:0001890,4.67e-13,39;UBERON:0006240,4.67e-13,39;UBERON:0001016,7.00e-13,75;UBERON:0001017,1.76e-12,73;UBERON:0003528,3.22e-12,29;UBERON:0002791,3.22e-12,29;UBERON:0001893,3.22e-12,29;UBERON:0004121,2.90e-11,95;UBERON:0000924,2.90e-11,95;UBERON:0006601,2.90e-11,95;UBERON:0010314,5.35e-11,92;UBERON:0000956,1.27e-08,21;UBERON:0001869,1.27e-08,21;UBERON:0000203,1.27e-08,21;UBERON:0000025,6.59e-07,114 | |||
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| |||
|short_description=p3@Rnf139 | |||
}} |
Latest revision as of 20:41, 26 September 2015
Short description: | p3@Rnf139 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Rnf139_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -259bp_to_ENSMUST00000036904, NM_175226, uc007vtq.2_5end |
EntrezGene: | Rnf139 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.21e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.21e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.02e-16 | 54 |
neural tube | 3.19e-15 | 52 |
neural rod | 3.19e-15 | 52 |
future spinal cord | 3.19e-15 | 52 |
neural keel | 3.19e-15 | 52 |
neurectoderm | 5.33e-15 | 64 |
neural plate | 5.33e-15 | 64 |
presumptive neural plate | 5.33e-15 | 64 |
pre-chordal neural plate | 2.20e-14 | 49 |
brain | 6.14e-14 | 47 |
future brain | 6.14e-14 | 47 |
regional part of brain | 1.56e-13 | 46 |
anterior neural tube | 2.35e-13 | 40 |
gray matter | 3.01e-13 | 34 |
ecto-epithelium | 4.65e-13 | 73 |
regional part of forebrain | 4.67e-13 | 39 |
forebrain | 4.67e-13 | 39 |
future forebrain | 4.67e-13 | 39 |
nervous system | 7.00e-13 | 75 |
central nervous system | 1.76e-12 | 73 |
brain grey matter | 3.22e-12 | 29 |
regional part of telencephalon | 3.22e-12 | 29 |
telencephalon | 3.22e-12 | 29 |
ectoderm-derived structure | 2.90e-11 | 95 |
ectoderm | 2.90e-11 | 95 |
presumptive ectoderm | 2.90e-11 | 95 |
structure with developmental contribution from neural crest | 5.35e-11 | 92 |
cerebral cortex | 1.27e-08 | 21 |
cerebral hemisphere | 1.27e-08 | 21 |
pallium | 1.27e-08 | 21 |
tube | 6.59e-07 | 114 |