FFCP PHASE1:Mm9::chr2:6243667..6243693,+: Difference between revisions
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{{FFCP|EntrezGene=98910|HGNC=|MCL_coexpression_id=782|UniProt=Q80XC3|association_with_transcript=-19bp_to_ENSMUST00000114937_5end|description=CAGE_peak_2_at_Usp6nl_5end|id=chr2:6243667..6243693,+|ontology_enrichment_celltype=CL:0000540!1.08e-14!33;CL:0000047!1.08e-14!33;CL:0000031!1.08e-14!33;CL:0000404!1.08e-14!33;CL:0000117!1.52e-14!23;CL:0000337!1.52e-14!23;CL:0000393!4.94e-11!39;CL:0000211!4.94e-11!39;CL:0000221!3.78e-08!44;CL:0000133!3.78e-08!44;CL:0002319!7.30e-08!43|ontology_enrichment_celltype_v019_2=CL:0000540,8.06e-15,33;CL:0000047,8.06e-15,33;CL:0000031,8.06e-15,33;CL:0000404,8.06e-15,33;CL:0000117,1.14e-14,23;CL:0000337,1.14e-14,23;CL:0000393,4.02e-11,39;CL:0000211,4.02e-11,39;CL:0000221,5.48e-08,44;CL:0000133,5.48e-08,44;CL:0002319,1.06e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!2.56e-14!102;UBERON:0000924!2.56e-14!102;UBERON:0006601!2.56e-14!102;UBERON:0001017!9.30e-14!73;UBERON:0005743!9.30e-14!73;UBERON:0000073!1.82e-13!75;UBERON:0001016!1.82e-13!75;UBERON:0000033!2.69e-13!63;UBERON:0002346!3.33e-13!71;UBERON:0003075!3.33e-13!71;UBERON:0007284!3.33e-13!71;UBERON:0003056!8.60e-12!49;UBERON:0001049!2.91e-11!52;UBERON:0005068!2.91e-11!52;UBERON:0006241!2.91e-11!52;UBERON:0007135!2.91e-11!52;UBERON:0000153!2.43e-10!94;UBERON:0002020!5.42e-10!34;UBERON:0000955!8.34e-10!50;UBERON:0006238!8.34e-10!50;UBERON:0002616!2.56e-09!49;UBERON:0007811!4.30e-09!86;UBERON:0003080!3.80e-08!40;UBERON:0002780!7.33e-08!39;UBERON:0001890!7.33e-08!39;UBERON:0006240!7.33e-08!39;UBERON:0002791!3.34e-07!29;UBERON:0003528!3.34e-07!29;UBERON:0001893!3.34e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.64e-15,95;UBERON:0000924,2.64e-15,95;UBERON:0006601,2.64e-15,95;UBERON:0002346,1.14e-14,64;UBERON:0003075,1.14e-14,64;UBERON:0007284,1.14e-14,64;UBERON:0010371,3.67e-14,73;UBERON:0001017,1.20e-13,73;UBERON:0001016,2.35e-13,75;UBERON:0000073,5.87e-12,54;UBERON:0003056,8.90e-12,49;UBERON:0001049,3.57e-11,52;UBERON:0005068,3.57e-11,52;UBERON:0006241,3.57e-11,52;UBERON:0007135,3.57e-11,52;UBERON:0010314,5.82e-10,92;UBERON:0002020,6.21e-10,34;UBERON:0000955,1.57e-08,47;UBERON:0006238,1.57e-08,47;UBERON:0003080,4.13e-08,40;UBERON:0002616,4.63e-08,46;UBERON:0002780,8.00e-08,39;UBERON:0001890,8.00e-08,39;UBERON:0006240,8.00e-08,39;UBERON:0003528,3.92e-07,29;UBERON:0002791,3.92e-07,29;UBERON:0001893,3.92e-07,29|phase1_expression=7.8472935081349,0,0.454999239389536,0,0.500895729946347,1.00727563147134,0.467225281191051,2.32421982194837,0.84473233291,0.468129052643987,0.856089841127525,1.03703806693937,1.36960583944965,1.39872643870396,1.66554880907831,3.03712901084739,0.699561878128147,5.0473946457318,6.30726394586398,2.54633791078818,5.44277056966847,1.09220046320974,1.56719873483361,0.47997726838022,0.45881856213434,0,0,0,0,0.504060259519861,0.443461021310609,4.44521471421742,2.46025915033828,0,1.1554064790051,0.831173226792462,0.204169356262369,0,0,0,0.588231488031014,0,0.485510353031154,2.01434908760924,1.31790010585369,2.38610777810186,0.782391344348039,0.218025156380447,0.659058548203415,0.58328969722285,1.81982348112971,0,3.35565212115473,2.17608642603403,1.68046899571232,1.02903774414379,1.14613375975503,1.54701627683233,16.3876333296274,10.5798195854407,13.3104594736298,0.677689064138264,0.889294796111139,0,0.988866362566974,0,0.599200221036809,0.768436610643109,9.95420278161385,10.9354810048669,11.9885227970288,10.5690864229407,13.0312439161452,10.2892271340561,13.4183659425531,11.0306254393203,7.70811166995721,6.89511625660014,7.52672012955593,13.4524013484798,12.1678565991205,11.9810075228055,8.09630697104005,7.31591393041184,6.26472815884921,13.8475435172624,12.6710795911202,13.9799584368975,4.16494063332512,1.43585964202892,0.289864488701678,0,0,0,0.649776417447669,0.448026887097336,0.983110940922263,0.340860645156116,1.03914401841148,0.70667914902068,6.05626705039726,0,0,0,1.73192832808971,1.01343946190039,1.01104889002957,1.02765491747154,3.10725460376606,1.92974780784272,4.68410382268567,2.43572382649713,1.61430848079241,3.01445281105245,2.4693628498498,1.13099932196708,1.48316980640624,1.15679485535929,0.884610551949874,3.07357014900077,2.42925670306433,1.93950101254089,0,5.27005434620785,7.33063473847093,0,3.59445373517761,0.599902730993408,2.1601938602421,5.84183493678809,5.03250663100489,13.1937069718508,3.82413504423008,6.13717097592793,6.85700547046548,5.19172041816825,6.21220119486929,1.7416975885413,2.0217820674694,3.78795340595653,9.49879233627737,6.89706313300419,7.92273371143537,7.9873553452929,13.1310443362063,10.1209839025031,11.1505052226077,6.20888089773638,11.8562396113063,7.37513712654495,6.51019159406611,4.60311038097907,3.33656699070717,3.1342694986995,2.88094990971121,6.17006227137329,1.40442637462647,0.772043721344145,1.13665399758237,4.14251545071004,2.81431271977315,3.42117916775928,4.26140524053378,4.52557733019029,1.69693824176116,2.79040733700489,1.60964040839772,2.91913355917924,2.46839774870221,1.8058421048700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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=98910 | |||
|HGNC= | |||
|MCL_coexpression_id=782 | |||
|TSSclassifier=NA | |||
|UniProt=Q80XC3 | |||
|association_with_transcript=-19bp_to_ENSMUST00000114937_5end | |||
|cluster_id=chr2:6243667..6243693,+ | |||
|description=CAGE_peak_2_at_Usp6nl_5end | |||
|id=chr2:6243667..6243693,+ | |||
|ontology_enrichment_celltype=CL:0000540!1.08e-14!33;CL:0000047!1.08e-14!33;CL:0000031!1.08e-14!33;CL:0000404!1.08e-14!33;CL:0000117!1.52e-14!23;CL:0000337!1.52e-14!23;CL:0000393!4.94e-11!39;CL:0000211!4.94e-11!39;CL:0000221!3.78e-08!44;CL:0000133!3.78e-08!44;CL:0002319!7.30e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,8.06e-15,33;CL:0000047,8.06e-15,33;CL:0000031,8.06e-15,33;CL:0000404,8.06e-15,33;CL:0000117,1.14e-14,23;CL:0000337,1.14e-14,23;CL:0000393,4.02e-11,39;CL:0000211,4.02e-11,39;CL:0000221,5.48e-08,44;CL:0000133,5.48e-08,44;CL:0002319,1.06e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!2.56e-14!102;UBERON:0000924!2.56e-14!102;UBERON:0006601!2.56e-14!102;UBERON:0001017!9.30e-14!73;UBERON:0005743!9.30e-14!73;UBERON:0000073!1.82e-13!75;UBERON:0001016!1.82e-13!75;UBERON:0000033!2.69e-13!63;UBERON:0002346!3.33e-13!71;UBERON:0003075!3.33e-13!71;UBERON:0007284!3.33e-13!71;UBERON:0003056!8.60e-12!49;UBERON:0001049!2.91e-11!52;UBERON:0005068!2.91e-11!52;UBERON:0006241!2.91e-11!52;UBERON:0007135!2.91e-11!52;UBERON:0000153!2.43e-10!94;UBERON:0002020!5.42e-10!34;UBERON:0000955!8.34e-10!50;UBERON:0006238!8.34e-10!50;UBERON:0002616!2.56e-09!49;UBERON:0007811!4.30e-09!86;UBERON:0003080!3.80e-08!40;UBERON:0002780!7.33e-08!39;UBERON:0001890!7.33e-08!39;UBERON:0006240!7.33e-08!39;UBERON:0002791!3.34e-07!29;UBERON:0003528!3.34e-07!29;UBERON:0001893!3.34e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,2.64e-15,95;UBERON:0000924,2.64e-15,95;UBERON:0006601,2.64e-15,95;UBERON:0002346,1.14e-14,64;UBERON:0003075,1.14e-14,64;UBERON:0007284,1.14e-14,64;UBERON:0010371,3.67e-14,73;UBERON:0001017,1.20e-13,73;UBERON:0001016,2.35e-13,75;UBERON:0000073,5.87e-12,54;UBERON:0003056,8.90e-12,49;UBERON:0001049,3.57e-11,52;UBERON:0005068,3.57e-11,52;UBERON:0006241,3.57e-11,52;UBERON:0007135,3.57e-11,52;UBERON:0010314,5.82e-10,92;UBERON:0002020,6.21e-10,34;UBERON:0000955,1.57e-08,47;UBERON:0006238,1.57e-08,47;UBERON:0003080,4.13e-08,40;UBERON:0002616,4.63e-08,46;UBERON:0002780,8.00e-08,39;UBERON:0001890,8.00e-08,39;UBERON:0006240,8.00e-08,39;UBERON:0003528,3.92e-07,29;UBERON:0002791,3.92e-07,29;UBERON:0001893,3.92e-07,29 | |||
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| |||
|short_description=p2@Usp6nl | |||
}} |
Latest revision as of 20:17, 26 September 2015
Short description: | p2@Usp6nl |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Usp6nl_5end |
Coexpression cluster: | MCL_coexpression_mm9:782 |
Association with transcript: | -19bp_to_ENSMUST00000114937_5end |
EntrezGene: | Usp6nl |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 8.06e-15 | 33 |
neuronal stem cell | 8.06e-15 | 33 |
neuroblast | 8.06e-15 | 33 |
electrically signaling cell | 8.06e-15 | 33 |
CNS neuron (sensu Vertebrata) | 1.14e-14 | 23 |
neuroblast (sensu Vertebrata) | 1.14e-14 | 23 |
electrically responsive cell | 4.02e-11 | 39 |
electrically active cell | 4.02e-11 | 39 |
ectodermal cell | 5.48e-08 | 44 |
neurectodermal cell | 5.48e-08 | 44 |
neural cell | 1.06e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 2.64e-15 | 95 |
ectoderm | 2.64e-15 | 95 |
presumptive ectoderm | 2.64e-15 | 95 |
neurectoderm | 1.14e-14 | 64 |
neural plate | 1.14e-14 | 64 |
presumptive neural plate | 1.14e-14 | 64 |
ecto-epithelium | 3.67e-14 | 73 |
central nervous system | 1.20e-13 | 73 |
nervous system | 2.35e-13 | 75 |
regional part of nervous system | 5.87e-12 | 54 |
pre-chordal neural plate | 8.90e-12 | 49 |
neural tube | 3.57e-11 | 52 |
neural rod | 3.57e-11 | 52 |
future spinal cord | 3.57e-11 | 52 |
neural keel | 3.57e-11 | 52 |
structure with developmental contribution from neural crest | 5.82e-10 | 92 |
gray matter | 6.21e-10 | 34 |
brain | 1.57e-08 | 47 |
future brain | 1.57e-08 | 47 |
anterior neural tube | 4.13e-08 | 40 |
regional part of brain | 4.63e-08 | 46 |
regional part of forebrain | 8.00e-08 | 39 |
forebrain | 8.00e-08 | 39 |
future forebrain | 8.00e-08 | 39 |
brain grey matter | 3.92e-07 | 29 |
regional part of telencephalon | 3.92e-07 | 29 |
telencephalon | 3.92e-07 | 29 |