FFCP PHASE1:Mm9::chr1:173957400..173957444,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=93840 | |EntrezGene=93840 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1425 | |||
|TSSclassifier=NA | |||
|UniProt=Q91ZD4,D3YY75 | |UniProt=Q91ZD4,D3YY75 | ||
|association_with_transcript=0bp_to_ENSMUST00000027837,ENSMUST00000111264_5end | |association_with_transcript=0bp_to_ENSMUST00000027837,ENSMUST00000111264_5end | ||
|cluster_id=chr1:173957400..173957444,- | |||
|description=CAGE_peak_1_at_Vangl2_5end | |description=CAGE_peak_1_at_Vangl2_5end | ||
|id=chr1:173957400..173957444,- | |id=chr1:173957400..173957444,- | ||
|ontology_enrichment_celltype=CL:0000221!1.59e-16!44;CL:0000133!1.59e-16!44;CL:0002319!6.08e-16!43;CL:0000540!1.54e-14!33;CL:0000047!1.54e-14!33;CL:0000031!1.54e-14!33;CL:0000404!1.54e-14!33;CL:0000055!4.39e-12!50;CL:0000117!2.78e-11!23;CL:0000337!2.78e-11!23;CL:0000393!9.92e-11!39;CL:0000211!9.92e-11!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.50e-16,44;CL:0000133,1.50e-16,44;CL:0002319,5.75e-16,43;CL:0000540,1.47e-14,33;CL:0000047,1.47e-14,33;CL:0000031,1.47e-14,33;CL:0000404,1.47e-14,33;CL:0000117,2.67e-11,23;CL:0000337,2.67e-11,23;CL:0000393,9.57e-11,39;CL:0000211,9.57e-11,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!4.39e-16!102;UBERON:0000924!4.39e-16!102;UBERON:0006601!4.39e-16!102;UBERON:0001017!4.15e-14!73;UBERON:0005743!4.15e-14!73;UBERON:0000073!3.14e-13!75;UBERON:0001016!3.14e-13!75;UBERON:0000468!5.75e-10!333;UBERON:0002346!1.00e-09!71;UBERON:0003075!1.00e-09!71;UBERON:0007284!1.00e-09!71;UBERON:0000922!8.25e-09!328;UBERON:0000153!1.94e-08!94;UBERON:0000033!2.06e-08!63;UBERON:0001049!8.01e-08!52;UBERON:0005068!8.01e-08!52;UBERON:0006241!8.01e-08!52;UBERON:0007135!8.01e-08!52;UBERON:0003056!4.69e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,3.57e-17,95;UBERON:0000924,3.57e-17,95;UBERON:0006601,3.57e-17,95;UBERON:0001017,3.95e-14,73;UBERON:0010371,2.72e-13,73;UBERON:0001016,3.00e-13,75;UBERON:0002346,8.25e-11,64;UBERON:0003075,8.25e-11,64;UBERON:0007284,8.25e-11,64;UBERON:0000922,2.45e-09,320;UBERON:0010314,1.32e-08,92;UBERON:0000073,4.89e-08,54;UBERON:0001049,7.82e-08,52;UBERON:0005068,7.82e-08,52;UBERON:0006241,7.82e-08,52;UBERON:0007135,7.82e-08,52;UBERON:0003056,4.59e-07,49 | |||
|phase1_expression=19.2178616525753,0.697950815278722,0,0,0,4.36486106970913,3.27057696833736,0.645616617207881,0.703943610758334,0.234064526321993,0.171217968225505,0.159544317990673,0.856003649656029,0.437102012094987,0,0.202475267389826,2.09868563438444,3.15462165358238,3.29074640653773,2.12194825899015,3.82694805679814,2.48227378002213,0.783599367416806,1.11994695955385,1.83527424853736,1.14846392823004,0.430761996159075,1.50829862880122,1.33016393619462,0.756090389279792,1.33038306393183,0,0,0,0.866554859253824,1.16364251750945,1.63335485009895,0,0,0,0,0,0.485510353031154,4.53228544712078,3.75094645512204,4.9557623083654,17.9950009200049,24.41881751461,9.00713349211335,10.6936444490856,12.3188051030319,23.0004102983955,1.51004345451963,0.725362142011344,0,2.05807548828758,2.0057340795713,1.54701627683233,51.3883810583378,47.0801971552109,55.1433321050376,9.82649143000483,3.55717918444456,1.7997994345628,1.97773272513395,0,16.1784059679939,30.3532461204028,53.9185984004084,56.1624703459833,53.422540183251,19.1386159550548,22.9703282589678,40.2994729417199,39.2966431174769,25.7381260250806,9.91042928994498,9.70423769447427,8.44835932909339,64.3605084123346,52.6053950713856,60.4259509845842,6.42120897703176,14.6318278608237,9.0150966188318,25.0434297652618,19.7896636310753,48.0910570229276,1.06016670666458,4.91215140694106,5.50742528533188,4.30211938490693,0,0.539703191637817,0,0,3.37066608316204,0.852151612890289,0.519572009205738,0.35333957451034,24.9292853004725,2.56652954828636,2.54805239706646,7.11066703153331,6.27824018932521,4.56047757855178,4.54972000513305,1.94112595522402,3.36619248741323,2.3750742250372,10.235634279202,6.39377504455497,6.22661842591358,3.16517545160507,9.17191915658498,3.39299796590124,0.741584903203122,1.3013942122792,1.76922110389975,6.95597454773859,4.41683036920787,4.363877278217,1.86391761218122,7.31951992528868,6.0739544975902,1.02182822083437,2.75574786363617,2.99951365496704,2.1601938602421,9.13722900369418,6.40500843946077,25.2565247746857,4.86708096538374,5.62574006126727,7.06479351502504,8.27430441645564,12.0170449343373,6.22034853050465,3.0326731012041,4.62972082950243,20.8192708740326,21.1509936078795,21.9675798362526,16.7282347797644,15.5803583056541,12.811372028485,12.1812241927647,6.46758426847539,25.0058871802097,21.5580931391314,15.3077478022636,11.3981780862339,19.1852601965663,14.2783388274088,16.0510066398196,14.131432944113,2.1066395619397,1.28673953557358,1.98914449576915,11.5990432619881,11.2572508790926,7.38254451990161,8.04932100989715,7.87056926989615,5.86215028972037,5.58081467400979,9.12129564758705,5.7215017759913,7.24063339619314,5.58169377868924,4.05344047729279,2.92399974850665,3.29325172936576,2.81833479396781,3.57492912559016,32.3120482870953,0,1.05780226665418,18.3427895460301,16.7210403739516,11.3403365963442,7.86565746031036,9.11749979763968,6.46767128782701,2.37264530772256,3.95277491337626,5.27803938480566,4.57599885694647,4.874102177978,1.79763881730844,2.16138049874694,1.7922714592893,14.2250925714811,14.9665551518745,13.5249282807697,11.4044743593376,13.3827216145662,15.0792012764185,11.8252324422361,5.16635517928608,3.767969468193,4.07210640941942,0.889357881261447,2.50267658574141,2.16214894624523,0.674586337154561,1.62288097110802,1.4470629585145,1.2731292589071,3.16465751195892,2.10775794807546,1.37280706594041,2.87536413054709,3.34926852901653,3.43241440426017,1.26289438973556,0.717589654087649,1.92977408545347,4.98833613449833,15.7277871769502,15.4816727619925,14.0888421193406,13.6120344007331,9.5478566741835,11.4260947625287,10.9274842800367,13.5566223931324,10.85176979279,16.9022054776936,7.53771247692395,8.80693407516067,7.5217510462386,0,1.08781136763742,2.45882136509518,2.20749397043786,8.50918126935297,9.61135830056066,7.86887737808042,3.28212205365685,12.9358369960665,11.3227235846025,16.3721782276927,17.9226598464414,14.2591151412732,16.1353622549635,16.1924280669958,13.151513606009,10.6727700045561,2.89189184779626,7.66476460124651,10.1497394090335,13.3567306669932,15.3422214364458,1.32745138339963,10.9251286269742,9.06970670894253,4.90373207365335,4.72483028609236,5.53383266299069,6.20227903603731,8.36127577798263,5.70395805415554,2.21225730555071,3.16255825724996,1.03135543248187,2.38307724027652,25.3886142584147,26.3891714916819,20.7906923980645,17.7340233642274,17.658512942605,14.4803138129866,14.0053876592716,0.469343416127421,1.48282449604674,0.882113592219848,29.0199805177005,15.9849782428946,23.1601631724118,30.4399477207998,27.9039529566604,4.08073171281791,8.71498919449395,0.854354403989263,9.49379592630823,5.37064129372164,3.20226376907975,2.7338845544205,1.83022538565218,2.37969801991397,4.47844647435706,3.45499934511059,1.90934123603023,18.8219916180776,13.0124458961183,12.7446302169725,13.1725626489115,9.82631536857799,7.28267470478032,8.43065248398426,3.92633912976044,2.72191443912765,1.86401793926078,0,9.56905894681464,10.9202603701684,12.8337784307071,9.17034746691891,7.26511339610346,7.51086327332825,10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| |phase1_expression=19.2178616525753,0.697950815278722,0,0,0,4.36486106970913,3.27057696833736,0.645616617207881,0.703943610758334,0.234064526321993,0.171217968225505,0.159544317990673,0.856003649656029,0.437102012094987,0,0.202475267389826,2.09868563438444,3.15462165358238,3.29074640653773,2.12194825899015,3.82694805679814,2.48227378002213,0.783599367416806,1.11994695955385,1.83527424853736,1.14846392823004,0.430761996159075,1.50829862880122,1.33016393619462,0.756090389279792,1.33038306393183,0,0,0,0.866554859253824,1.16364251750945,1.63335485009895,0,0,0,0,0,0.485510353031154,4.53228544712078,3.75094645512204,4.9557623083654,17.9950009200049,24.41881751461,9.00713349211335,10.6936444490856,12.3188051030319,23.0004102983955,1.51004345451963,0.725362142011344,0,2.05807548828758,2.0057340795713,1.54701627683233,51.3883810583378,47.0801971552109,55.1433321050376,9.82649143000483,3.55717918444456,1.7997994345628,1.97773272513395,0,16.1784059679939,30.3532461204028,53.9185984004084,56.1624703459833,53.422540183251,19.1386159550548,22.9703282589678,40.2994729417199,39.2966431174769,25.7381260250806,9.91042928994498,9.70423769447427,8.44835932909339,64.3605084123346,52.6053950713856,60.4259509845842,6.42120897703176,14.6318278608237,9.0150966188318,25.0434297652618,19.7896636310753,48.0910570229276,1.06016670666458,4.91215140694106,5.50742528533188,4.30211938490693,0,0.539703191637817,0,0,3.37066608316204,0.852151612890289,0.519572009205738,0.35333957451034,24.9292853004725,2.56652954828636,2.54805239706646,7.11066703153331,6.27824018932521,4.56047757855178,4.54972000513305,1.94112595522402,3.36619248741323,2.3750742250372,10.235634279202,6.39377504455497,6.22661842591358,3.16517545160507,9.17191915658498,3.39299796590124,0.741584903203122,1.3013942122792,1.76922110389975,6.95597454773859,4.41683036920787,4.363877278217,1.86391761218122,7.31951992528868,6.0739544975902,1.02182822083437,2.75574786363617,2.99951365496704,2.1601938602421,9.13722900369418,6.40500843946077,25.2565247746857,4.86708096538374,5.62574006126727,7.06479351502504,8.27430441645564,12.0170449343373,6.22034853050465,3.0326731012041,4.62972082950243,20.8192708740326,21.1509936078795,21.9675798362526,16.7282347797644,15.5803583056541,12.811372028485,12.1812241927647,6.46758426847539,25.0058871802097,21.5580931391314,15.3077478022636,11.3981780862339,19.1852601965663,14.2783388274088,16.0510066398196,14.131432944113,2.1066395619397,1.28673953557358,1.98914449576915,11.5990432619881,11.2572508790926,7.38254451990161,8.04932100989715,7.87056926989615,5.86215028972037,5.58081467400979,9.12129564758705,5.7215017759913,7.24063339619314,5.58169377868924,4.05344047729279,2.92399974850665,3.29325172936576,2.81833479396781,3.57492912559016,32.3120482870953,0,1.05780226665418,18.3427895460301,16.7210403739516,11.3403365963442,7.86565746031036,9.11749979763968,6.46767128782701,2.37264530772256,3.95277491337626,5.27803938480566,4.57599885694647,4.874102177978,1.79763881730844,2.16138049874694,1.7922714592893,14.2250925714811,14.9665551518745,13.5249282807697,11.4044743593376,13.3827216145662,15.0792012764185,11.8252324422361,5.16635517928608,3.767969468193,4.07210640941942,0.889357881261447,2.50267658574141,2.16214894624523,0.674586337154561,1.62288097110802,1.4470629585145,1.2731292589071,3.16465751195892,2.10775794807546,1.37280706594041,2.87536413054709,3.34926852901653,3.43241440426017,1.26289438973556,0.717589654087649,1.92977408545347,4.98833613449833,15.7277871769502,15.4816727619925,14.0888421193406,13.6120344007331,9.5478566741835,11.4260947625287,10.9274842800367,13.5566223931324,10.85176979279,16.9022054776936,7.53771247692395,8.80693407516067,7.5217510462386,0,1.08781136763742,2.45882136509518,2.20749397043786,8.50918126935297,9.61135830056066,7.86887737808042,3.28212205365685,12.9358369960665,11.3227235846025,16.3721782276927,17.9226598464414,14.2591151412732,16.1353622549635,16.1924280669958,13.151513606009,10.6727700045561,2.89189184779626,7.66476460124651,10.1497394090335,13.3567306669932,15.3422214364458,1.32745138339963,10.9251286269742,9.06970670894253,4.90373207365335,4.72483028609236,5.53383266299069,6.20227903603731,8.36127577798263,5.70395805415554,2.21225730555071,3.16255825724996,1.03135543248187,2.38307724027652,25.3886142584147,26.3891714916819,20.7906923980645,17.7340233642274,17.658512942605,14.4803138129866,14.0053876592716,0.469343416127421,1.48282449604674,0.882113592219848,29.0199805177005,15.9849782428946,23.1601631724118,30.4399477207998,27.9039529566604,4.08073171281791,8.71498919449395,0.854354403989263,9.49379592630823,5.37064129372164,3.20226376907975,2.7338845544205,1.83022538565218,2.37969801991397,4.47844647435706,3.45499934511059,1.90934123603023,18.8219916180776,13.0124458961183,12.7446302169725,13.1725626489115,9.82631536857799,7.28267470478032,8.43065248398426,3.92633912976044,2.72191443912765,1.86401793926078,0,9.56905894681464,10.9202603701684,12.8337784307071,9.17034746691891,7.26511339610346,7.51086327332825,10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| ||
|short_description=p1@Vangl2 | |short_description=p1@Vangl2 | ||
}} | }} |
Latest revision as of 19:37, 26 September 2015
Short description: | p1@Vangl2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Vangl2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1425 |
Association with transcript: | 0bp_to_ENSMUST00000027837, ENSMUST00000111264_5end |
EntrezGene: | Vangl2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.50e-16 | 44 |
neurectodermal cell | 1.50e-16 | 44 |
neural cell | 5.75e-16 | 43 |
neuron | 1.47e-14 | 33 |
neuronal stem cell | 1.47e-14 | 33 |
neuroblast | 1.47e-14 | 33 |
electrically signaling cell | 1.47e-14 | 33 |
CNS neuron (sensu Vertebrata) | 2.67e-11 | 23 |
neuroblast (sensu Vertebrata) | 2.67e-11 | 23 |
electrically responsive cell | 9.57e-11 | 39 |
electrically active cell | 9.57e-11 | 39 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 3.57e-17 | 95 |
ectoderm | 3.57e-17 | 95 |
presumptive ectoderm | 3.57e-17 | 95 |
central nervous system | 3.95e-14 | 73 |
ecto-epithelium | 2.72e-13 | 73 |
nervous system | 3.00e-13 | 75 |
neurectoderm | 8.25e-11 | 64 |
neural plate | 8.25e-11 | 64 |
presumptive neural plate | 8.25e-11 | 64 |
embryo | 2.45e-09 | 320 |
structure with developmental contribution from neural crest | 1.32e-08 | 92 |
regional part of nervous system | 4.89e-08 | 54 |
neural tube | 7.82e-08 | 52 |
neural rod | 7.82e-08 | 52 |
future spinal cord | 7.82e-08 | 52 |
neural keel | 7.82e-08 | 52 |
pre-chordal neural plate | 4.59e-07 | 49 |