FFCP PHASE1:Mm9::chr1:168339904..168339980,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=71592 | |EntrezGene=71592 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q3B2,Q80TC5,D6RH56,Q6GQW2 | |UniProt=E9Q3B2,Q80TC5,D6RH56,Q6GQW2 | ||
|association_with_transcript=0bp_to_ENSMUST00000079972,ENSMUST00000111411,ENSMUST00000135673,ENSMUST00000148243,ENSMUST00000169324,NM_001142948,NM_175170,uc007dkn.2,uc007dko.2,uc007dkp.2,uc011wvk.1_5end | |association_with_transcript=0bp_to_ENSMUST00000079972,ENSMUST00000111411,ENSMUST00000135673,ENSMUST00000148243,ENSMUST00000169324,NM_001142948,NM_175170,uc007dkn.2,uc007dko.2,uc007dkp.2,uc011wvk.1_5end | ||
|cluster_id=chr1:168339904..168339980,- | |||
|description=CAGE_peak_1_at_Pogk_5end | |description=CAGE_peak_1_at_Pogk_5end | ||
|id=chr1:168339904..168339980,- | |id=chr1:168339904..168339980,- | ||
|ontology_enrichment_celltype=CL:0000540!6.28e-16!33;CL:0000047!6.28e-16!33;CL:0000031!6.28e-16!33;CL:0000404!6.28e-16!33;CL:0000117!6.70e-15!23;CL:0000337!6.70e-15!23;CL:0000393!1.94e-11!39;CL:0000211!1.94e-11!39;CL:0000221!9.01e-09!44;CL:0000133!9.01e-09!44;CL:0002319!2.20e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.28e-16,33;CL:0000047,6.28e-16,33;CL:0000031,6.28e-16,33;CL:0000404,6.28e-16,33;CL:0000117,6.70e-15,23;CL:0000337,6.70e-15,23;CL:0000393,1.94e-11,39;CL:0000211,1.94e-11,39;CL:0000221,9.23e-09,44;CL:0000133,9.23e-09,44;CL:0002319,2.25e-08,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!6.68e-20!102;UBERON:0000924!6.68e-20!102;UBERON:0006601!6.68e-20!102;UBERON:0000033!1.10e-16!63;UBERON:0002346!4.88e-16!71;UBERON:0003075!4.88e-16!71;UBERON:0007284!4.88e-16!71;UBERON:0001017!6.66e-16!73;UBERON:0005743!6.66e-16!73;UBERON:0000073!1.78e-15!75;UBERON:0001016!1.78e-15!75;UBERON:0003056!5.59e-13!49;UBERON:0000153!1.49e-12!94;UBERON:0001049!1.89e-12!52;UBERON:0005068!1.89e-12!52;UBERON:0006241!1.89e-12!52;UBERON:0007135!1.89e-12!52;UBERON:0000955!9.01e-12!50;UBERON:0006238!9.01e-12!50;UBERON:0002616!2.54e-11!49;UBERON:0007811!1.91e-10!86;UBERON:0003080!1.41e-09!40;UBERON:0002780!3.10e-09!39;UBERON:0001890!3.10e-09!39;UBERON:0006240!3.10e-09!39;UBERON:0002020!4.63e-09!34;UBERON:0000468!2.53e-08!333;UBERON:0000922!2.81e-07!328;UBERON:0002791!5.59e-07!29;UBERON:0003528!5.59e-07!29;UBERON:0001893!5.59e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004121,6.48e-20,95;UBERON:0000924,6.48e-20,95;UBERON:0006601,6.48e-20,95;UBERON:0010371,1.96e-17,73;UBERON:0002346,2.32e-16,64;UBERON:0003075,2.32e-16,64;UBERON:0007284,2.32e-16,64;UBERON:0001017,6.85e-16,73;UBERON:0001016,1.83e-15,75;UBERON:0010314,4.08e-15,92;UBERON:0000073,1.52e-13,54;UBERON:0003056,5.76e-13,49;UBERON:0001049,1.94e-12,52;UBERON:0005068,1.94e-12,52;UBERON:0006241,1.94e-12,52;UBERON:0007135,1.94e-12,52;UBERON:0000955,3.44e-10,47;UBERON:0006238,3.44e-10,47;UBERON:0002616,9.29e-10,46;UBERON:0003080,1.44e-09,40;UBERON:0002780,3.19e-09,39;UBERON:0001890,3.19e-09,39;UBERON:0006240,3.19e-09,39;UBERON:0002020,4.76e-09,34;UBERON:0003528,5.74e-07,29;UBERON:0002791,5.74e-07,29;UBERON:0001893,5.74e-07,29 | |||
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| |phase1_expression=20.4990524294136,5.23463111459042,9.09998478779072,2.41971369045464,2.00358291978539,8.72972213941827,8.41005506143892,4.9066862907799,17.8801677132617,17.7889040004715,29.9631444394634,26.9629897404237,2.05440875917447,3.05971408466491,1.33243904726265,1.41732687172878,1.39912375625629,2.36596624018678,2.19383093769182,2.97072756258621,6.80346321208558,3.97163804803541,1.56719873483361,3.83981814704176,4.12936705920906,6.31655160526522,8.18447792702242,5.38678081714723,1.90023419456374,1.76421090831952,5.98672378769323,0,1.23012957516914,0,5.77703239502549,5.81821258754723,7.14592746918292,0,2.3440060335714,0,1.17646297606203,0.683045484958446,0,5.03587271902309,5.37297735463427,5.50640256485045,1.56478268869608,2.61630187656536,0.659058548203415,2.72201858703997,3.63964696225943,1.43752564364972,2.01339127269284,2.17608642603403,4.03312558970957,3.08711323243136,6.30373567865265,3.6097046459421,31.3590514332377,23.8045940672415,35.494558596346,2.71075625655306,3.55717918444456,4.94944844504769,3.9554654502679,4.2628806896766,4.49400165777607,6.14749288514487,45.7271190280386,39.9617577461804,44.1682418837902,16.8534080798244,13.9147180799517,40.2994729417199,43.9930711973705,43.203282970671,33.0347642998166,25.2820929408672,21.6585211891303,35.0817525362316,42.5417542751205,36.98484930953,24.0097379141188,20.2594539611405,18.7941844765476,19.1508580557884,20.2167786734726,31.1287074528252,8.17842887998388,7.17929821014462,6.66688324013859,3.44169550792555,1.3599426674155,0.539703191637817,2.59910566979068,4.48026887097336,4.91555470461132,3.91989741929533,2.85764605063156,3.88673531961374,17.7462708918617,5.13305909657271,12.7402619853323,0,4.97929394325792,3.29367825117628,4.54972000513305,4.11061966988616,5.95557132388495,9.94562331734326,10.5826049327343,3.95805121805784,11.5307748628029,9.3448037142626,11.9940481278419,11.1843266283411,4.6967043869531,12.2909453381925,1.76922110389975,9.38247729694973,5.30019644304944,3.87900202508178,5.59175283654366,14.6390398505774,19.0596503200244,3.32094171771169,5.27186547826049,4.19931911695385,3.04968544975355,15.4284358586967,16.4700217014706,35.5601816479406,13.5582969749976,11.7629110371952,20.1554403222773,14.2772311499627,14.9703864859965,6.71797641294502,11.625246887949,14.5204880561667,16.0048144844126,16.5529515192101,17.2859644613135,15.8240058727501,21.9757892258789,21.7793324484245,22.113606996096,10.0894314588216,18.5388473922244,17.5868654556072,20.762232651346,15.7820927347854,12.7901734643775,18.4573648256748,11.3180175024369,16.3208098791164,2.80885274925294,2.05878325691772,3.12579849335152,8.90640821902658,10.5536726991493,10.2635375032778,9.94327889457883,11.8058539048442,11.5700334665534,11.1616293480196,8.31647544338819,12.7274223180215,12.341988743511,9.85004784474571,6.64764238276017,6.72519942156529,9.00155472693308,6.44190810049784,7.99101804543684,40.7502265021966,1.32167513193519,2.64450566663544,16.6364835417482,13.9342003116263,10.3093969057675,8.47070803418039,5.78182913996663,5.89699440948933,3.79623249235609,7.41145296258049,7.03738584640755,6.36660710531683,9.74820435595601,2.69645822596266,3.24207074812041,2.19055400579804,10.8110703543257,11.3106027483632,7.88954149711563,11.2008230314923,12.8008641530633,10.8009162631091,9.23253442014156,9.15182917473533,6.59394656933774,8.39100714668244,4.74324203339438,5.33904338291501,4.91397487783007,2.47348323623339,2.43432145666204,2.41177159752417,2.5462585178142,2.01387296215567,2.2698931748505,2.19649130550465,5.75072826109418,1.11642284300551,3.12037673114561,2.02063102357689,2.15276896226295,5.78932225636041,4.80358294433172,17.2437184711141,13.5260930446881,8.82674446030978,7.51008794523207,5.02518772325447,7.37935286746643,11.1226179278945,10.5615546551148,6.86540537911202,8.77001227616179,5.24362607090362,5.35323443784276,6.36455857758651,4.52373851817817,4.35124547054968,6.39293554924747,8.55403913544671,25.3669932180711,19.6915633474901,6.72133276044369,6.05930225290495,7.57219726599016,13.6653560503823,14.0025208526319,8.84184552424442,11.8083297263669,12.7384438854975,13.3587531552715,15.7818163272108,14.2303600060748,18.315315036043,11.3552068166615,17.8065603667255,18.2433394476005,9.40329700943452,7.96470830039777,8.74010290157933,7.86041248108353,6.78978287121233,11.5167738223501,12.604841065701,13.6966995379157,13.8142817201452,7.84294232446387,16.4339114126624,6.32511651449993,11.3449097573006,7.83011093233712,17.1058039329745,11.6422815404479,18.0043109426538,18.0887038315119,15.3397183137781,15.9612549984057,7.61162372786498,6.57080782578389,5.93129798418696,6.61585194164886,8.40919890001548,12.9171541356724,10.6150747873554,12.4147237763262,12.9671310798598,6.99554007911642,23.9198639593557,1.70870880797853,10.9385040020508,4.8150577116125,2.0720530270516,1.6403307326523,2.97411625168479,10.8786195196067,8.39708713941948,9.95039811391851,3.81868247206045,12.811607740036,12.6058069618646,10.2605073780711,13.381650944926,10.0446779323242,12.4075198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| ||
|short_description=p1@Pogk | |short_description=p1@Pogk | ||
}} | }} |
Latest revision as of 17:40, 26 September 2015
Short description: | p1@Pogk |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Pogk_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000079972, ENSMUST00000111411, ENSMUST00000135673, ENSMUST00000148243, ENSMUST00000169324, NM_001142948, NM_175170, uc007dkn.2, uc007dko.2, uc007dkp.2, uc011wvk.1_5end |
EntrezGene: | Pogk |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.28e-16 | 33 |
neuronal stem cell | 6.28e-16 | 33 |
neuroblast | 6.28e-16 | 33 |
electrically signaling cell | 6.28e-16 | 33 |
CNS neuron (sensu Vertebrata) | 6.70e-15 | 23 |
neuroblast (sensu Vertebrata) | 6.70e-15 | 23 |
electrically responsive cell | 1.94e-11 | 39 |
electrically active cell | 1.94e-11 | 39 |
ectodermal cell | 9.23e-09 | 44 |
neurectodermal cell | 9.23e-09 | 44 |
neural cell | 2.25e-08 | 43 |
Ontology term | p-value | n |
---|---|---|
ectoderm-derived structure | 6.48e-20 | 95 |
ectoderm | 6.48e-20 | 95 |
presumptive ectoderm | 6.48e-20 | 95 |
ecto-epithelium | 1.96e-17 | 73 |
neurectoderm | 2.32e-16 | 64 |
neural plate | 2.32e-16 | 64 |
presumptive neural plate | 2.32e-16 | 64 |
central nervous system | 6.85e-16 | 73 |
nervous system | 1.83e-15 | 75 |
structure with developmental contribution from neural crest | 4.08e-15 | 92 |
regional part of nervous system | 1.52e-13 | 54 |
pre-chordal neural plate | 5.76e-13 | 49 |
neural tube | 1.94e-12 | 52 |
neural rod | 1.94e-12 | 52 |
future spinal cord | 1.94e-12 | 52 |
neural keel | 1.94e-12 | 52 |
brain | 3.44e-10 | 47 |
future brain | 3.44e-10 | 47 |
regional part of brain | 9.29e-10 | 46 |
anterior neural tube | 1.44e-09 | 40 |
regional part of forebrain | 3.19e-09 | 39 |
forebrain | 3.19e-09 | 39 |
future forebrain | 3.19e-09 | 39 |
gray matter | 4.76e-09 | 34 |
brain grey matter | 5.74e-07 | 29 |
regional part of telencephalon | 5.74e-07 | 29 |
telencephalon | 5.74e-07 | 29 |