FFCP PHASE1:Mm9::chr7:3655801..3655850,+: Difference between revisions
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{{FFCP|EntrezGene=76846|HGNC=|MCL_coexpression_id=3|UniProt=D3Z673|association_with_transcript=-71bp_to_ENSMUST00000108624_5end|description=CAGE_peak_4_at_Rps9_5end|id=chr7:3655801..3655850,+|ontology_enrichment_celltype=CL:0000219!7.15e-09!54;CL:0002320!2.01e-08!46;CL:0000134!2.01e-08!46|ontology_enrichment_celltype_v019_2=CL:0000049,2.03e-10,19;CL:0000557,3.73e-10,7;CL:0000219,4.95e-08,54;CL:0002320,5.89e-08,46;CL:0000134,5.89e-08,46;CL:0000988,1.23e-07,32;CL:0002032,1.23e-07,32;CL:0000037,1.23e-07,32;CL:0000837,1.23e-07,32;CL:0000068,7.34e-07,3;CL:0002202,7.34e-07,3;CL:0000069,7.34e-07,3;CL:0002632,7.34e-07,3;CL:0002092,7.34e-07,3;CL:0002368,7.34e-07,3;CL:0002540,7.34e-07,3;CL:0000307,7.34e-07,3;CL:0000377,7.34e-07,3|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=DOID:0060100,5.03e-15,3;DOID:4045,5.03e-15,3;DOID:0050686,8.24e-13,6|ontology_enrichment_uberon=UBERON:0002384!2.01e-08!46;UBERON:0002204!1.90e-07!32|ontology_enrichment_uberon_v019_2=UBERON:0002204,3.53e-10,32;UBERON:0002371,1.94e-09,16;UBERON:0002384,5.89e-08,46;UBERON:0003126,7.34e-07,3;UBERON:0001005,7.34e-07,3;UBERON:0007196,7.34e-07,3;UBERON:0001558,7.34e-07,3;UBERON:0001474,9.83e-07,22;UBERON:0004765,9.83e-07,22;UBERON:0001434,9.83e-07,22|phase1_expression=0,0,0.454999239389536,0,0,0,0,0.258246646883153,0.140788722151667,0.234064526321993,0.171217968225505,0.0797721589953364,0.171200729931206,0,0,0.607425802169478,0.699561878128147,0.157731082679119,0.411343300817216,0.42438965179803,0.0850432901510698,0.0992909512008853,0,0,0,0,0,0,0,0,0.443461021310609,1.90509202037889,0,0,0.288851619751275,0.166234645358492,0,48.1311375347444,28.1280724028568,33.5055196143231,32.9409633297368,31.4200923080885,38.3553178894611,0,0.506884656097573,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0.167782606057736,1.45072428402269,0.336093799142464,0.257259436035947,0.286533439938757,0.515672092277442,0,0,0.633831403506179,0.677689064138264,0.889294796111139,1.7997994345628,1.97773272513395,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0.142371680799103,0.186399445825301,1.74170244666323,0.453429360640713,0.289864488701678,0,0.679971333707751,0,0,0,0.140444420131752,0.511290967734173,0.519572009205738,0,0,0,0,0,1.5154372870785,0.760079596425296,2.52762222507392,0.22836775943812,0,0.29688427812965,0,0,0,0,0,0.125666591329675,0,0,0.884610551949874,0,0.441683036920787,0,0,0,0,0,0.599075622529601,1.19980546198682,1.27070227073065,0,0,0.125654352112864,0,0,0,0,0.101839363850316,0.870848794270651,0,0,0.260240885925407,0,0.180062129805349,0.30140963567143,0.0680364991513279,0,0,0,0,0,0,0.219195732427575,0,0,0,0,2.1066395619397,1.02939162845886,1.13665399758237,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0.251335208800269,0,0,0,0,0.199141273254367,0.189667900953082,0,0,0,0.193952487167626,0,0,0,0,0,0,0.667380422864376,0.393117990226406,0.224862112384854,0,0.482354319504834,0.50925170356284,0.287696137450811,0.810676133875177,0.549122826376163,0,0.744281895337007,0,0,0.179397413521912,0.482443521363367,0.923765950833023,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0.144649058581512,0,4.89515115436839,0,0,0,0,1.3114795630134,0.252470927204373,0.315508219416257,0,0,0.477937595905104,0,0,0,0,0.790575555893047,0,0,0,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0.469343416127421,0,0.220528398054962,0.16488625294148,0,0.241251699712623,0,0,0,0.18542530201051,0.341741761595705,0.206386867963223,0.740778109478847,0.753473828018764,0.136694227721025,0.457556346413045,0,0.279902904647316,0.829199842826543,0,0.158167996790568,0.203319467126849,0,0,0.218362563746178,0,0,0.26175594198403,0,0,0,0.299033092087958,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0.576060012515731,0,0.202725215290164,0.205421914329655,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0,0.100826185136841,0,0,0,0,0,0.717710852875806,0.335769232728157,0,0,0,0.643105137237198,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0.341467211508268,0,0,0,0,0,0,0.252697211763798,0,0,0,0.320125762024346,0,0,0,0,0.412085900803307,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0.263069711437843,0.135804113845862,0,0.118635018124174,0.197008964751127,0,0,0.192906610981141,0,0.467863216890817,0,0,0,0|short_description=p4@Rps9}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=76846 | |||
|HGNC= | |||
|MCL_coexpression_id=3 | |||
|TSSclassifier=NA | |||
|UniProt=D3Z673 | |||
|association_with_transcript=-71bp_to_ENSMUST00000108624_5end | |||
|cluster_id=chr7:3655801..3655850,+ | |||
|description=CAGE_peak_4_at_Rps9_5end | |||
|id=chr7:3655801..3655850,+ | |||
|ontology_enrichment_celltype=CL:0000219!7.15e-09!54;CL:0002320!2.01e-08!46;CL:0000134!2.01e-08!46 | |||
|ontology_enrichment_celltype_v019_2=CL:0000049,2.03e-10,19;CL:0000557,3.73e-10,7;CL:0000219,4.95e-08,54;CL:0002320,5.89e-08,46;CL:0000134,5.89e-08,46;CL:0000988,1.23e-07,32;CL:0002032,1.23e-07,32;CL:0000037,1.23e-07,32;CL:0000837,1.23e-07,32;CL:0000068,7.34e-07,3;CL:0002202,7.34e-07,3;CL:0000069,7.34e-07,3;CL:0002632,7.34e-07,3;CL:0002092,7.34e-07,3;CL:0002368,7.34e-07,3;CL:0002540,7.34e-07,3;CL:0000307,7.34e-07,3;CL:0000377,7.34e-07,3 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2=DOID:0060100,5.03e-15,3;DOID:4045,5.03e-15,3;DOID:0050686,8.24e-13,6 | |||
|ontology_enrichment_uberon=UBERON:0002384!2.01e-08!46;UBERON:0002204!1.90e-07!32 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002204,3.53e-10,32;UBERON:0002371,1.94e-09,16;UBERON:0002384,5.89e-08,46;UBERON:0003126,7.34e-07,3;UBERON:0001005,7.34e-07,3;UBERON:0007196,7.34e-07,3;UBERON:0001558,7.34e-07,3;UBERON:0001474,9.83e-07,22;UBERON:0004765,9.83e-07,22;UBERON:0001434,9.83e-07,22 | |||
|phase1_expression=0,0,0.454999239389536,0,0,0,0,0.258246646883153,0.140788722151667,0.234064526321993,0.171217968225505,0.0797721589953364,0.171200729931206,0,0,0.607425802169478,0.699561878128147,0.157731082679119,0.411343300817216,0.42438965179803,0.0850432901510698,0.0992909512008853,0,0,0,0,0,0,0,0,0.443461021310609,1.90509202037889,0,0,0.288851619751275,0.166234645358492,0,48.1311375347444,28.1280724028568,33.5055196143231,32.9409633297368,31.4200923080885,38.3553178894611,0,0.506884656097573,0,0,0.218025156380447,0.219686182734472,0,0.139986421625363,0,0.167782606057736,1.45072428402269,0.336093799142464,0.257259436035947,0.286533439938757,0.515672092277442,0,0,0.633831403506179,0.677689064138264,0.889294796111139,1.7997994345628,1.97773272513395,0.7104801149461,0,0,0,0,0,0,0,0,0,0,0,0.127687338085188,0,0,0.0914876436024097,0,0,0,0,0,0.142371680799103,0.186399445825301,1.74170244666323,0.453429360640713,0.289864488701678,0,0.679971333707751,0,0,0,0.140444420131752,0.511290967734173,0.519572009205738,0,0,0,0,0,1.5154372870785,0.760079596425296,2.52762222507392,0.22836775943812,0,0.29688427812965,0,0,0,0,0,0.125666591329675,0,0,0.884610551949874,0,0.441683036920787,0,0,0,0,0,0.599075622529601,1.19980546198682,1.27070227073065,0,0,0.125654352112864,0,0,0,0,0.101839363850316,0.870848794270651,0,0,0.260240885925407,0,0.180062129805349,0.30140963567143,0.0680364991513279,0,0,0,0,0,0,0.219195732427575,0,0,0,0,2.1066395619397,1.02939162845886,1.13665399758237,0,0,0,0,0,0.154267112887378,0,0,0.116765342367169,0,0,0,0,0,0.134206418760372,0,0,0,0,0,0,0,0,0.22237804384487,0,0,0,0.251335208800269,0,0,0,0,0.199141273254367,0.189667900953082,0,0,0,0.193952487167626,0,0,0,0,0,0,0.667380422864376,0.393117990226406,0.224862112384854,0,0.482354319504834,0.50925170356284,0.287696137450811,0.810676133875177,0.549122826376163,0,0.744281895337007,0,0,0.179397413521912,0.482443521363367,0.923765950833023,0,0,0,0,0,0,0,0,0.221464689648775,0,0,0,0.144649058581512,0,4.89515115436839,0,0,0,0,1.3114795630134,0.252470927204373,0.315508219416257,0,0,0.477937595905104,0,0,0,0,0.790575555893047,0,0,0,0,0,0,0,0,0,0.295301892880773,0,0.258428293168221,0,0,0,0,0,0,0,0,0,0,0,0,0.304464949114599,0.469343416127421,0,0.220528398054962,0.16488625294148,0,0.241251699712623,0,0,0,0.18542530201051,0.341741761595705,0.206386867963223,0.740778109478847,0.753473828018764,0.136694227721025,0.457556346413045,0,0.279902904647316,0.829199842826543,0,0.158167996790568,0.203319467126849,0,0,0.218362563746178,0,0,0.26175594198403,0,0,0,0.299033092087958,0,0,0.129159823477731,0,0.117357238645754,0,0,0,0.576060012515731,0,0.202725215290164,0.205421914329655,0.25984164595559,0.179026695667481,0,0,0,0.100966449948148,0,0.100826185136841,0,0,0,0,0,0.717710852875806,0.335769232728157,0,0,0,0.643105137237198,0,0,0,0,0,0,0,0,0,0,0,0.207574695168353,0,0.341467211508268,0,0,0,0,0,0,0.252697211763798,0,0,0,0.320125762024346,0,0,0,0,0.412085900803307,0,0,0,0,0.145346416632329,0,0.0846146078916765,0,0.263069711437843,0.135804113845862,0,0.118635018124174,0.197008964751127,0,0,0.192906610981141,0,0.467863216890817,0,0,0,0 | |||
|short_description=p4@Rps9 | |||
}} |
Latest revision as of 17:00, 26 September 2015
Short description: | p4@Rps9 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rps9_5end |
Coexpression cluster: | MCL_coexpression_mm9:3 |
Association with transcript: | -71bp_to_ENSMUST00000108624_5end |
EntrezGene: | Rps9 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
common myeloid progenitor | 2.03e-10 | 19 |
granulocyte monocyte progenitor cell | 3.73e-10 | 7 |
motile cell | 4.95e-08 | 54 |
connective tissue cell | 5.89e-08 | 46 |
mesenchymal cell | 5.89e-08 | 46 |
hematopoietic cell | 1.23e-07 | 32 |
hematopoietic oligopotent progenitor cell | 1.23e-07 | 32 |
hematopoietic stem cell | 1.23e-07 | 32 |
hematopoietic multipotent progenitor cell | 1.23e-07 | 32 |
duct epithelial cell | 7.34e-07 | 3 |
epithelial cell of tracheobronchial tree | 7.34e-07 | 3 |
branched duct epithelial cell | 7.34e-07 | 3 |
epithelial cell of lower respiratory tract | 7.34e-07 | 3 |
bone marrow cell | 7.34e-07 | 3 |
respiratory epithelial cell | 7.34e-07 | 3 |
mesenchymal stem cell of the bone marrow | 7.34e-07 | 3 |
tracheal epithelial cell | 7.34e-07 | 3 |
tracheoblast | 7.34e-07 | 3 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system | 3.53e-10 | 32 |
bone marrow | 1.94e-09 | 16 |
connective tissue | 5.89e-08 | 46 |
trachea | 7.34e-07 | 3 |
respiratory airway | 7.34e-07 | 3 |
tracheobronchial tree | 7.34e-07 | 3 |
lower respiratory tract | 7.34e-07 | 3 |
bone element | 9.83e-07 | 22 |
skeletal element | 9.83e-07 | 22 |
skeletal system | 9.83e-07 | 22 |
Ontology term | p-value | n |
---|---|---|
musculoskeletal system cancer | 5.03e-15 | 3 |
muscle cancer | 5.03e-15 | 3 |
organ system cancer | 8.24e-13 | 6 |