FFCP PHASE1:Mm9::chr9:40200020..40200067,-: Difference between revisions
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{{FFCP|EntrezGene=235283|HGNC=|MCL_coexpression_id=1|UniProt=|association_with_transcript=0bp_to_ENSMUST00000137189,ENSMUST00000153029_5end|description=CAGE_peak_6_at_Gramd1b_5end|id=chr9:40200020..40200067,-|ontology_enrichment_celltype=CL:0000221!3.21e-15!44;CL:0000133!3.21e-15!44;CL:0002319!7.10e-15!43;CL:0000540!5.48e-13!33;CL:0000047!5.48e-13!33;CL:0000031!5.48e-13!33;CL:0000404!5.48e-13!33;CL:0000055!4.69e-12!50;CL:0000393!1.09e-10!39;CL:0000211!1.09e-10!39;CL:0000117!5.05e-10!23;CL:0000337!5.05e-10!23|ontology_enrichment_celltype_v019_2=CL:0000221,2.88e-18,44;CL:0000133,2.88e-18,44;CL:0002319,9.57e-18,43;CL:0000540,4.59e-17,33;CL:0000047,4.59e-17,33;CL:0000031,4.59e-17,33;CL:0000404,4.59e-17,33;CL:0000117,2.98e-14,23;CL:0000337,2.98e-14,23;CL:0000393,6.45e-14,39;CL:0000211,6.45e-14,39;CL:0002321,4.56e-08,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!1.88e-33!75;UBERON:0001016!1.88e-33!75;UBERON:0004121!1.72e-32!102;UBERON:0000924!1.72e-32!102;UBERON:0006601!1.72e-32!102;UBERON:0001017!2.13e-32!73;UBERON:0005743!2.13e-32!73;UBERON:0002346!2.30e-28!71;UBERON:0003075!2.30e-28!71;UBERON:0007284!2.30e-28!71;UBERON:0000033!6.29e-24!63;UBERON:0001049!1.23e-22!52;UBERON:0005068!1.23e-22!52;UBERON:0006241!1.23e-22!52;UBERON:0007135!1.23e-22!52;UBERON:0000955!5.44e-22!50;UBERON:0006238!5.44e-22!50;UBERON:0002616!2.72e-21!49;UBERON:0003056!1.52e-20!49;UBERON:0003080!2.53e-17!40;UBERON:0002780!1.39e-16!39;UBERON:0001890!1.39e-16!39;UBERON:0006240!1.39e-16!39;UBERON:0002020!6.46e-16!34;UBERON:0002791!2.26e-13!29;UBERON:0003528!2.26e-13!29;UBERON:0001893!2.26e-13!29;UBERON:0007811!1.07e-11!86;UBERON:0000153!2.75e-11!94;UBERON:0000956!1.67e-09!21;UBERON:0001869!1.67e-09!21;UBERON:0000203!1.67e-09!21;UBERON:0002619!3.17e-08!17;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.60e-42,75;UBERON:0001017,1.40e-40,73;UBERON:0004121,2.45e-39,95;UBERON:0000924,2.45e-39,95;UBERON:0006601,2.45e-39,95;UBERON:0002346,2.31e-32,64;UBERON:0003075,2.31e-32,64;UBERON:0007284,2.31e-32,64;UBERON:0000073,4.46e-31,54;UBERON:0001049,6.42e-29,52;UBERON:0005068,6.42e-29,52;UBERON:0006241,6.42e-29,52;UBERON:0007135,6.42e-29,52;UBERON:0010371,2.45e-27,73;UBERON:0000955,1.10e-24,47;UBERON:0006238,1.10e-24,47;UBERON:0003056,3.35e-24,49;UBERON:0002616,1.14e-23,46;UBERON:0002020,2.50e-22,34;UBERON:0003080,2.86e-21,40;UBERON:0010314,9.45e-21,92;UBERON:0002780,3.52e-20,39;UBERON:0001890,3.52e-20,39;UBERON:0006240,3.52e-20,39;UBERON:0003528,2.24e-18,29;UBERON:0002791,2.24e-18,29;UBERON:0001893,2.24e-18,29;UBERON:0000956,2.15e-12,21;UBERON:0001869,2.15e-12,21;UBERON:0000203,2.15e-12,21;UBERON:0002619,1.63e-11,17;UBERON:0002021,3.92e-11,10;UBERON:0000411,3.92e-11,10;UBERON:0001950,3.92e-11,10;UBERON:0003076,4.72e-08,12;UBERON:0003057,4.72e-08,12;UBERON:0004111,2.47e-07,122;UBERON:0002420,2.78e-07,8;UBERON:0007245,2.78e-07,8;UBERON:0010009,2.78e-07,8;UBERON:0010011,2.78e-07,8;UBERON:0000454,2.78e-07,8;UBERON:0000025,4.58e-07,114|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0.159544317990673,0,0,0,0,0,0,0,0,2.55129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,0.506884656097573,0.734187008646726,0,0.872100625521786,0.878744730937887,1.36100929351998,0.979904951377538,1.43752564364972,0,0,0,0,0,0,1.21389876515759,2.64495489636016,1.90149421051854,0.677689064138264,0.889294796111139,0,0,0,2.69640099466564,1.92109152660777,1.55534418462716,0.945041568321835,1.26194976810829,2.85650984403804,2.20868540951614,1.5923803897944,1.24599112323707,0,31.9336054898227,13.0241084846891,17.050325191443,2.1101806036831,2.47016637726506,1.56274011167028,21.4970909231063,9.56696437053856,14.6686317865738,6.48182888042069,2.98980529678116,2.23679334990361,1.36307147999731,3.32514864469856,0,0,0.679971333707751,0,0,0,0.561777680527007,0.340860645156116,0.259786004602869,0.35333957451034,1.54927761754349,0,0,0,0,0,0,0.45673551887624,0,1.63286352971307,1.04091196059682,1.82679286987285,0.691846491768175,0.60289056221049,0.940709657085638,0.879666139307728,0.247194967734374,0.289198713839823,0,0.161766849947409,0.220841518460394,0.484875253135222,0,14.0534782565543,7.74952815209784,0.255457055208591,0,0,0,24.7154555017957,10.0650132620098,1.00523481690292,13.7321212951898,11.5071955798649,18.2853479212413,12.4925772562173,0.305518091550949,0.622034853050465,2.27450482590307,0.841767423545896,2.60240885925407,0.919608417733892,1.26043490863744,1.20563854268572,1.63287597963187,2.17793324484245,2.15513966487376,4.9153640440413,0.646703978798527,0.189106080167819,0.527853372491847,0.219195732427575,0.556094498451196,0.696504333044333,0.411564272815887,0.59710280045548,0,0,0,0,0.234526059981096,0,0.710234206755631,0,0.308534225774757,0,0,0.233530684734339,0,0,0.162137619091711,0,0,0.268412837520744,13.4585567081041,1.9551876352064,0,0.264450566663544,1.06644125267617,1.16118335930219,0.515469845288373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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=235283 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt= | |||
|association_with_transcript=0bp_to_ENSMUST00000137189,ENSMUST00000153029_5end | |||
|cluster_id=chr9:40200020..40200067,- | |||
|description=CAGE_peak_6_at_Gramd1b_5end | |||
|id=chr9:40200020..40200067,- | |||
|ontology_enrichment_celltype=CL:0000221!3.21e-15!44;CL:0000133!3.21e-15!44;CL:0002319!7.10e-15!43;CL:0000540!5.48e-13!33;CL:0000047!5.48e-13!33;CL:0000031!5.48e-13!33;CL:0000404!5.48e-13!33;CL:0000055!4.69e-12!50;CL:0000393!1.09e-10!39;CL:0000211!1.09e-10!39;CL:0000117!5.05e-10!23;CL:0000337!5.05e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,2.88e-18,44;CL:0000133,2.88e-18,44;CL:0002319,9.57e-18,43;CL:0000540,4.59e-17,33;CL:0000047,4.59e-17,33;CL:0000031,4.59e-17,33;CL:0000404,4.59e-17,33;CL:0000117,2.98e-14,23;CL:0000337,2.98e-14,23;CL:0000393,6.45e-14,39;CL:0000211,6.45e-14,39;CL:0002321,4.56e-08,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!1.88e-33!75;UBERON:0001016!1.88e-33!75;UBERON:0004121!1.72e-32!102;UBERON:0000924!1.72e-32!102;UBERON:0006601!1.72e-32!102;UBERON:0001017!2.13e-32!73;UBERON:0005743!2.13e-32!73;UBERON:0002346!2.30e-28!71;UBERON:0003075!2.30e-28!71;UBERON:0007284!2.30e-28!71;UBERON:0000033!6.29e-24!63;UBERON:0001049!1.23e-22!52;UBERON:0005068!1.23e-22!52;UBERON:0006241!1.23e-22!52;UBERON:0007135!1.23e-22!52;UBERON:0000955!5.44e-22!50;UBERON:0006238!5.44e-22!50;UBERON:0002616!2.72e-21!49;UBERON:0003056!1.52e-20!49;UBERON:0003080!2.53e-17!40;UBERON:0002780!1.39e-16!39;UBERON:0001890!1.39e-16!39;UBERON:0006240!1.39e-16!39;UBERON:0002020!6.46e-16!34;UBERON:0002791!2.26e-13!29;UBERON:0003528!2.26e-13!29;UBERON:0001893!2.26e-13!29;UBERON:0007811!1.07e-11!86;UBERON:0000153!2.75e-11!94;UBERON:0000956!1.67e-09!21;UBERON:0001869!1.67e-09!21;UBERON:0000203!1.67e-09!21;UBERON:0002619!3.17e-08!17;UBERON:0002021!1.17e-07!10;UBERON:0000411!1.17e-07!10;UBERON:0001950!1.17e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.60e-42,75;UBERON:0001017,1.40e-40,73;UBERON:0004121,2.45e-39,95;UBERON:0000924,2.45e-39,95;UBERON:0006601,2.45e-39,95;UBERON:0002346,2.31e-32,64;UBERON:0003075,2.31e-32,64;UBERON:0007284,2.31e-32,64;UBERON:0000073,4.46e-31,54;UBERON:0001049,6.42e-29,52;UBERON:0005068,6.42e-29,52;UBERON:0006241,6.42e-29,52;UBERON:0007135,6.42e-29,52;UBERON:0010371,2.45e-27,73;UBERON:0000955,1.10e-24,47;UBERON:0006238,1.10e-24,47;UBERON:0003056,3.35e-24,49;UBERON:0002616,1.14e-23,46;UBERON:0002020,2.50e-22,34;UBERON:0003080,2.86e-21,40;UBERON:0010314,9.45e-21,92;UBERON:0002780,3.52e-20,39;UBERON:0001890,3.52e-20,39;UBERON:0006240,3.52e-20,39;UBERON:0003528,2.24e-18,29;UBERON:0002791,2.24e-18,29;UBERON:0001893,2.24e-18,29;UBERON:0000956,2.15e-12,21;UBERON:0001869,2.15e-12,21;UBERON:0000203,2.15e-12,21;UBERON:0002619,1.63e-11,17;UBERON:0002021,3.92e-11,10;UBERON:0000411,3.92e-11,10;UBERON:0001950,3.92e-11,10;UBERON:0003076,4.72e-08,12;UBERON:0003057,4.72e-08,12;UBERON:0004111,2.47e-07,122;UBERON:0002420,2.78e-07,8;UBERON:0007245,2.78e-07,8;UBERON:0010009,2.78e-07,8;UBERON:0010011,2.78e-07,8;UBERON:0000454,2.78e-07,8;UBERON:0000025,4.58e-07,114 | |||
|phase1_expression=0.80074423552397,0,0,0,0,0,0,0,0,0,0,0.159544317990673,0,0,0,0,0,0,0,0,2.55129870453209,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.00717454380462,0.506884656097573,0.734187008646726,0,0.872100625521786,0.878744730937887,1.36100929351998,0.979904951377538,1.43752564364972,0,0,0,0,0,0,1.21389876515759,2.64495489636016,1.90149421051854,0.677689064138264,0.889294796111139,0,0,0,2.69640099466564,1.92109152660777,1.55534418462716,0.945041568321835,1.26194976810829,2.85650984403804,2.20868540951614,1.5923803897944,1.24599112323707,0,31.9336054898227,13.0241084846891,17.050325191443,2.1101806036831,2.47016637726506,1.56274011167028,21.4970909231063,9.56696437053856,14.6686317865738,6.48182888042069,2.98980529678116,2.23679334990361,1.36307147999731,3.32514864469856,0,0,0.679971333707751,0,0,0,0.561777680527007,0.340860645156116,0.259786004602869,0.35333957451034,1.54927761754349,0,0,0,0,0,0,0.45673551887624,0,1.63286352971307,1.04091196059682,1.82679286987285,0.691846491768175,0.60289056221049,0.940709657085638,0.879666139307728,0.247194967734374,0.289198713839823,0,0.161766849947409,0.220841518460394,0.484875253135222,0,14.0534782565543,7.74952815209784,0.255457055208591,0,0,0,24.7154555017957,10.0650132620098,1.00523481690292,13.7321212951898,11.5071955798649,18.2853479212413,12.4925772562173,0.305518091550949,0.622034853050465,2.27450482590307,0.841767423545896,2.60240885925407,0.919608417733892,1.26043490863744,1.20563854268572,1.63287597963187,2.17793324484245,2.15513966487376,4.9153640440413,0.646703978798527,0.189106080167819,0.527853372491847,0.219195732427575,0.556094498451196,0.696504333044333,0.411564272815887,0.59710280045548,0,0,0,0,0.234526059981096,0,0.710234206755631,0,0.308534225774757,0,0,0.233530684734339,0,0,0.162137619091711,0,0,0.268412837520744,13.4585567081041,1.9551876352064,0,0.264450566663544,1.06644125267617,1.16118335930219,0.515469845288373,0,0,0.190225626112559,0,0.164698954724011,0,0.198956472041151,0.19496408711912,0,0.216138049874694,0,0.379335801906163,0.913988100877831,0,0.814605311381257,0.387904974335251,0.140271639780637,0.316182685621286,0.147610147979602,0.156998727841375,0.123397163921801,0,0,0.393117990226406,0,0,0,0,0.287696137450811,0,0,0,0,0,0,0,0,0,0.189491411770485,0.162964976442026,0.169745085775188,0,0,0.238043640886014,0,0.315270288212382,0,0,0,0.345369963731791,0,0,0,0,0,26.8119485279613,19.3399282877135,0.163934945376675,0.252470927204373,1.57754109708128,0.780877488593277,1.07711698866399,1.91175038362042,1.55959071857676,4.52922449262132,1.21443210502468,2.04579100537918,2.37172666767914,14.4594592389813,0.425820255624806,0.35613120733451,0.488660878060728,1.15479086080775,0,0.728341908464944,0,0,0,0.614870295887855,0,0,0,0,0,0,19.4050575279659,0.540183282093931,0.646793418913773,0.428674070063185,2.12808280370728,0.891844088010353,2.46823530903181,3.65357938937519,1.87737366450968,1.90648863777438,1.54369878638473,0.32977250588296,0,0.180938774784468,0,0,0.291480836629851,21.8801856372401,0.170870880797853,0.206386867963223,0,0,0,0,0,0,0,0,1.26534397432454,0.813277868507395,0.648032044930808,0.418176592028937,0.218362563746178,0.404593039154462,0.0826534557253359,0.523511883968059,0,0,0,0.149516546043979,0.330916980914195,0,0.904118764344118,0.844780627453891,0,0.13020438484395,0.104859344425711,0,0,0,0.405450430580328,0.616265742988964,0.129920822977795,0.358053391334963,0,0,0,0,0.0762068066549998,0,0.0974578807397524,0,0,0,0.221985953374065,0.179427713218951,1.67884616364078,0.19318959403219,0.750729901804728,0.73260649706906,0.428736758158132,14.5455910170255,10.1655331671072,8.74617949363636,11.4579102687879,7.90524638780963,15.7568979547248,14.3524840504043,12.8254275044043,15.7612421128477,18.1256963593682,21.2281727818246,1.3492355185943,1.99512436700516,1.19513524027894,0.972426868273176,0.419226325255965,0.551530525350042,0.666740183404846,0.824140228955577,3.20919209591815,0.758091635291392,1.52087579934144,0.754505365544305,0.187283014939765,1.02440243847791,0.631790158511746,2.38146845641537,0.811190281613988,0.964546102318525,0.824171801606613,0.588795680537589,2.05721551431249,0.887379030796687,0.953744759789284,2.18019624948493,0.188218760830661,0.423073039458382,1.09756783723664,1.31534855718921,1.49384525230448,0,1.30498519936592,0.591026894253381,0.818462086339379,1.23949472948773,0.385813221962283,0.999242311751784,0.935726433781634,0.429742108096597,0.382576664137687,0.882365676478062,0.695603506861264 | |||
|short_description=p6@Gramd1b | |||
}} |
Latest revision as of 15:11, 26 September 2015
Short description: | p6@Gramd1b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Gramd1b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000137189, ENSMUST00000153029_5end |
EntrezGene: | Gramd1b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 2.88e-18 | 44 |
neurectodermal cell | 2.88e-18 | 44 |
neural cell | 9.57e-18 | 43 |
neuron | 4.59e-17 | 33 |
neuronal stem cell | 4.59e-17 | 33 |
neuroblast | 4.59e-17 | 33 |
electrically signaling cell | 4.59e-17 | 33 |
CNS neuron (sensu Vertebrata) | 2.98e-14 | 23 |
neuroblast (sensu Vertebrata) | 2.98e-14 | 23 |
electrically responsive cell | 6.45e-14 | 39 |
electrically active cell | 6.45e-14 | 39 |
embryonic cell | 4.56e-08 | 70 |