FFCP PHASE1:Mm9::chr4:140204651..140204696,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72754 | |EntrezGene=72754 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=A2AWP8 | |UniProt=A2AWP8 | ||
|association_with_transcript=0bp_to_ENSMUST00000039204,ENSMUST00000097820,ENSMUST00000105799,NM_001112723,NM_172415,uc008vmw.2,uc008vmx.2_5end | |association_with_transcript=0bp_to_ENSMUST00000039204,ENSMUST00000097820,ENSMUST00000105799,NM_001112723,NM_172415,uc008vmw.2,uc008vmx.2_5end | ||
|cluster_id=chr4:140204651..140204696,- | |||
|description=CAGE_peak_1_at_Arhgef10l_5end | |description=CAGE_peak_1_at_Arhgef10l_5end | ||
|id=chr4:140204651..140204696,- | |id=chr4:140204651..140204696,- | ||
|ontology_enrichment_celltype=CL:0000221!3.01e-17!44;CL:0000133!3.01e-17!44;CL:0002319!1.04e-16!43;CL:0000055!2.81e-15!50;CL:0000540!2.86e-13!33;CL:0000047!2.86e-13!33;CL:0000031!2.86e-13!33;CL:0000404!2.86e-13!33;CL:0000393!2.33e-12!39;CL:0000211!2.33e-12!39;CL:0000117!4.91e-08!23;CL:0000337!4.91e-08!23;CL:0000107!2.34e-07!9 | |ontology_enrichment_celltype=CL:0000221!3.01e-17!44;CL:0000133!3.01e-17!44;CL:0002319!1.04e-16!43;CL:0000055!2.81e-15!50;CL:0000540!2.86e-13!33;CL:0000047!2.86e-13!33;CL:0000031!2.86e-13!33;CL:0000404!2.86e-13!33;CL:0000393!2.33e-12!39;CL:0000211!2.33e-12!39;CL:0000117!4.91e-08!23;CL:0000337!4.91e-08!23;CL:0000107!2.34e-07!9 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.83e-17,44;CL:0000133,1.83e-17,44;CL:0002319,6.41e-17,43;CL:0000540,1.97e-13,33;CL:0000047,1.97e-13,33;CL:0000031,1.97e-13,33;CL:0000404,1.97e-13,33;CL:0000393,1.65e-12,39;CL:0000211,1.65e-12,39;CL:0000117,4.00e-08,23;CL:0000337,4.00e-08,23;CL:0000107,1.95e-07,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.78e-24!75;UBERON:0001016!6.78e-24!75;UBERON:0001017!2.86e-23!73;UBERON:0005743!2.86e-23!73;UBERON:0004121!1.52e-21!102;UBERON:0000924!1.52e-21!102;UBERON:0006601!1.52e-21!102;UBERON:0002346!1.58e-15!71;UBERON:0003075!1.58e-15!71;UBERON:0007284!1.58e-15!71;UBERON:0000033!1.14e-13!63;UBERON:0001049!4.29e-13!52;UBERON:0005068!4.29e-13!52;UBERON:0006241!4.29e-13!52;UBERON:0007135!4.29e-13!52;UBERON:0000955!1.52e-12!50;UBERON:0006238!1.52e-12!50;UBERON:0002616!2.40e-12!49;UBERON:0000025!2.83e-10!114;UBERON:0003056!2.85e-10!49;UBERON:0004111!2.47e-09!122;UBERON:0002020!6.08e-09!34;UBERON:0003080!8.31e-09!40;UBERON:0000468!9.03e-09!333;UBERON:0002780!2.44e-08!39;UBERON:0001890!2.44e-08!39;UBERON:0006240!2.44e-08!39;UBERON:0000010!1.29e-07!11;UBERON:0002410!2.34e-07!9;UBERON:0002791!3.63e-07!29;UBERON:0003528!3.63e-07!29;UBERON:0001893!3.63e-07!29 | |ontology_enrichment_uberon=UBERON:0000073!6.78e-24!75;UBERON:0001016!6.78e-24!75;UBERON:0001017!2.86e-23!73;UBERON:0005743!2.86e-23!73;UBERON:0004121!1.52e-21!102;UBERON:0000924!1.52e-21!102;UBERON:0006601!1.52e-21!102;UBERON:0002346!1.58e-15!71;UBERON:0003075!1.58e-15!71;UBERON:0007284!1.58e-15!71;UBERON:0000033!1.14e-13!63;UBERON:0001049!4.29e-13!52;UBERON:0005068!4.29e-13!52;UBERON:0006241!4.29e-13!52;UBERON:0007135!4.29e-13!52;UBERON:0000955!1.52e-12!50;UBERON:0006238!1.52e-12!50;UBERON:0002616!2.40e-12!49;UBERON:0000025!2.83e-10!114;UBERON:0003056!2.85e-10!49;UBERON:0004111!2.47e-09!122;UBERON:0002020!6.08e-09!34;UBERON:0003080!8.31e-09!40;UBERON:0000468!9.03e-09!333;UBERON:0002780!2.44e-08!39;UBERON:0001890!2.44e-08!39;UBERON:0006240!2.44e-08!39;UBERON:0000010!1.29e-07!11;UBERON:0002410!2.34e-07!9;UBERON:0002791!3.63e-07!29;UBERON:0003528!3.63e-07!29;UBERON:0001893!3.63e-07!29 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,3.32e-24,75;UBERON:0001017,1.43e-23,73;UBERON:0004121,2.31e-22,95;UBERON:0000924,2.31e-22,95;UBERON:0006601,2.31e-22,95;UBERON:0010314,1.78e-18,92;UBERON:0002346,1.06e-16,64;UBERON:0003075,1.06e-16,64;UBERON:0007284,1.06e-16,64;UBERON:0000073,1.79e-14,54;UBERON:0010371,2.77e-14,73;UBERON:0001049,2.98e-13,52;UBERON:0005068,2.98e-13,52;UBERON:0006241,2.98e-13,52;UBERON:0007135,2.98e-13,52;UBERON:0000955,3.12e-11,47;UBERON:0006238,3.12e-11,47;UBERON:0002616,4.93e-11,46;UBERON:0003056,2.16e-10,49;UBERON:0000025,4.15e-10,114;UBERON:0004111,3.16e-09,122;UBERON:0002020,4.81e-09,34;UBERON:0003080,6.60e-09,40;UBERON:0002780,1.97e-08,39;UBERON:0001890,1.97e-08,39;UBERON:0006240,1.97e-08,39;UBERON:0000010,1.06e-07,11;UBERON:0002410,1.95e-07,9;UBERON:0003528,3.03e-07,29;UBERON:0002791,3.03e-07,29;UBERON:0001893,3.03e-07,29 | |||
|phase1_expression=3.04282809499109,0,0,0,0,0.16787927191189,0,0,0,0,0,0,0,0,0.333109761815663,0.404950534779652,0,0.157731082679119,0,0,3.656861476496,0.297872853602656,0,0,0.22940928106717,0,0,0,0,0.252030129759931,0,0,0,0,0.288851619751275,0.498703936075477,0.204169356262369,0,0,0,0,0,0,3.9028013572429,3.64956952390252,3.85448179539531,3.12956537739216,6.5407546914134,7.90870257844099,8.74934545834275,5.03951117851305,5.75010257459886,0,0,0,2.31533492432352,6.01720223871389,2.57836046138721,5.66486090406874,4.7609188134483,5.70448263155561,2.03306719241479,3.55717918444456,2.2497492932035,0.988866362566974,0.7104801149461,8.38880309451533,6.91592949578798,5.08079100311541,5.67024940993101,3.99617426567626,5.42736870367227,7.95126747425809,4.77714116938321,3.35459148563827,3.67687514644008,8.8092704799511,7.02280359468532,6.60508093001847,6.72620067423989,7.22752384459036,4.16730696445408,6.97957497503452,9.00420176050688,7.18151764551008,4.41942878210502,6.83384067835694,7.08317894136142,4.31639301999149,6.8014404096107,4.63783181922684,1.72084775396277,0,0,0,0,1.26399978118577,4.77204903218562,3.11743205523443,4.59341446863442,7.04217098883402,3.84979432242953,17.8363667794652,0,1.08245520505607,1.01343946190039,0.505524445014783,1.25602267690966,0.258937883647172,4.15637989381509,3.81667718885499,2.74018930480927,3.22861696158482,2.86373017049983,3.99801604261396,2.63899841792318,1.23597483867187,2.74738778147832,0.884610551949874,5.3383060482645,3.3126227769059,2.42437626567611,1.86391761218122,11.7112318804619,28.2753054198164,1.53274233125155,0.11981512450592,0.599902730993408,0.127070227073065,7.48953197024113,6.8625090422794,4.64921102817598,5.04090528557602,10.7400492078739,4.36354893575076,7.30085683804909,6.92507674182151,2.61254638281195,1.51633655060205,3.15662783829711,2.99277018814219,5.0578462975364,3.96136685571768,5.27466862425003,8.36848939561333,7.30248205623644,11.5253121208466,3.10444044886819,3.66465587985832,4.53854592402766,4.92663147659057,2.84954452155847,3.33656699070717,5.92028683087683,5.14455341019859,4.57778813682534,0,0.257347907114715,0,3.72826390563903,3.51789089971644,3.96136535214233,3.78791576936336,3.34499193970586,3.08534225774756,3.48800917125612,5.09719462659276,5.13767506415546,6.08871444679878,5.74586124276833,5.35054143002648,7.01759939641595,4.39100230582101,5.77087600669599,2.10289948564127,3.08713837137853,0,0.264450566663544,4.90562976231038,3.0190767341857,2.70621668776396,2.8235693447268,1.33426826306922,2.09248188723815,1.42358718463353,1.64698954724011,1.75934646160189,3.58121649674071,3.70431765526328,1.79763881730844,0.864552199498777,1.99141273254367,3.22435431620239,3.77020091612105,5.63538678365402,4.2766778847516,4.46090720485539,5.19005067188357,4.80597682144355,2.36176236767363,2.511979645462,2.46794327843601,0.889357881261447,0.667380422864376,1.76903095601883,0.674586337154561,0.811440485554012,0.72353147925725,0.763877555344259,1.43848068725405,1.29708181420028,1.09824565275233,5.75072826109418,4.83783231969054,4.36852742360385,1.01031551178845,2.33216637578486,3.37710464954357,2.95605104266567,4.35830247072115,5.37784422258685,3.22515662972857,3.75504397261603,2.84760637651087,3.80869825417622,6.43941037930736,5.67486518782288,5.09368786192182,6.218735977642,4.91589944147214,3.10832967358612,5.20736610893442,0,0,0.983528546038072,0.551873492609465,5.13761887960934,7.97039468826982,2.95082901678016,7.57412781613119,10.7272794601527,10.5418460960092,10.9865932843727,10.9925647058174,15.5959071857676,11.889214293131,12.9539424535966,10.2289550268959,12.2539211163422,4.81981974632711,4.40014264145633,6.41036173202119,8.1443479676788,7.09371528781903,1.32745138339963,4.85561272309963,3.02323556964751,1.88605079755898,3.2483208216885,3.68922177532713,5.16856586336442,5.81653967164009,3.56497378384721,1.8962205476149,4.21674434299995,3.09406629744561,3.06395645178409,2.52085531643834,4.2688365648309,5.35842587578981,3.19212420556092,4.99432689285798,5.75921572107423,7.00269382963578,0.704015124191131,0.42366414172764,0.220528398054962,3.2977250588296,4.03661066739764,2.29189114726992,2.14870219205646,2.46211349617592,0.582961673259701,5.19190845629427,0.683483523191411,5.15967169908056,1.11116716421827,0.941842285023455,0.410082683163076,0.686334519619568,1.18984900995699,0.979660166265606,0.690999869022119,0.954670618015114,2.68885594543965,3.65975040828328,4.10420295122845,3.55450103224597,2.18362563746178,4.31565908431426,4.3806331534428,3.40282724579238,2.85152941241944,0,0,3.28936401296753,1.65458490457098,3.30567020184881,2.97067593998782,2.02747350588934,3.87278887530988,2.99470085141085,1.15345278868282,0.483168241652012,1.44015003128933,0.316011120628178,2.63542779877213,2.46506297195585,1.42912905275575,1.43221356533985,0.79472541912506,1.08175904567972,1.9199638532695,0.807731599585181,0.457240839929999,0.806609481094724,0.487289403698762,1.05833025804362,0.818138315270983,4.53460767230423,0.221985953374065,0.0897138566094757,0.167884616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| ||
|short_description=p1@Arhgef10l | |short_description=p1@Arhgef10l | ||
}} | }} |
Latest revision as of 14:58, 26 September 2015
Short description: | p1@Arhgef10l |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Arhgef10l_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000039204, ENSMUST00000097820, ENSMUST00000105799, NM_001112723, NM_172415, uc008vmw.2, uc008vmx.2_5end |
EntrezGene: | Arhgef10l |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.83e-17 | 44 |
neurectodermal cell | 1.83e-17 | 44 |
neural cell | 6.41e-17 | 43 |
neuron | 1.97e-13 | 33 |
neuronal stem cell | 1.97e-13 | 33 |
neuroblast | 1.97e-13 | 33 |
electrically signaling cell | 1.97e-13 | 33 |
electrically responsive cell | 1.65e-12 | 39 |
electrically active cell | 1.65e-12 | 39 |
CNS neuron (sensu Vertebrata) | 4.00e-08 | 23 |
neuroblast (sensu Vertebrata) | 4.00e-08 | 23 |
autonomic neuron | 1.95e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
nervous system | 3.32e-24 | 75 |
central nervous system | 1.43e-23 | 73 |
ectoderm-derived structure | 2.31e-22 | 95 |
ectoderm | 2.31e-22 | 95 |
presumptive ectoderm | 2.31e-22 | 95 |
structure with developmental contribution from neural crest | 1.78e-18 | 92 |
neurectoderm | 1.06e-16 | 64 |
neural plate | 1.06e-16 | 64 |
presumptive neural plate | 1.06e-16 | 64 |
regional part of nervous system | 1.79e-14 | 54 |
ecto-epithelium | 2.77e-14 | 73 |
neural tube | 2.98e-13 | 52 |
neural rod | 2.98e-13 | 52 |
future spinal cord | 2.98e-13 | 52 |
neural keel | 2.98e-13 | 52 |
brain | 3.12e-11 | 47 |
future brain | 3.12e-11 | 47 |
regional part of brain | 4.93e-11 | 46 |
pre-chordal neural plate | 2.16e-10 | 49 |
tube | 4.15e-10 | 114 |
anatomical conduit | 3.16e-09 | 122 |
gray matter | 4.81e-09 | 34 |
anterior neural tube | 6.60e-09 | 40 |
regional part of forebrain | 1.97e-08 | 39 |
forebrain | 1.97e-08 | 39 |
future forebrain | 1.97e-08 | 39 |
peripheral nervous system | 1.06e-07 | 11 |
autonomic nervous system | 1.95e-07 | 9 |
brain grey matter | 3.03e-07 | 29 |
regional part of telencephalon | 3.03e-07 | 29 |
telencephalon | 3.03e-07 | 29 |