FFCP PHASE1:Mm9::chr15:100592172..100592228,+: Difference between revisions
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{{FFCP|EntrezGene=59033|HGNC=|MCL_coexpression_id=1|UniProt=Q8JZR6|association_with_transcript=0bp_to_ENSMUST00000023776,NM_021530,uc007xse.1_5end|description=CAGE_peak_1_at_Slc4a8_5end|id=chr15:100592172..100592228,+|ontology_enrichment_celltype=CL:0000221!1.21e-15!44;CL:0000133!1.21e-15!44;CL:0002319!2.97e-15!43;CL:0000540!5.58e-14!33;CL:0000047!5.58e-14!33;CL:0000031!5.58e-14!33;CL:0000404!5.58e-14!33;CL:0000117!1.62e-12!23;CL:0000337!1.62e-12!23;CL:0000055!2.68e-12!50;CL:0000393!1.15e-10!39;CL:0000211!1.15e-10!39|ontology_enrichment_celltype_v019_2=CL:0000221,3.58e-16,44;CL:0000133,3.58e-16,44;CL:0002319,9.12e-16,43;CL:0000540,1.91e-14,33;CL:0000047,1.91e-14,33;CL:0000031,1.91e-14,33;CL:0000404,1.91e-14,33;CL:0000117,6.29e-13,23;CL:0000337,6.29e-13,23;CL:0000393,1.48e-10,39;CL:0000211,1.48e-10,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!5.18e-35!75;UBERON:0001016!5.18e-35!75;UBERON:0001017!1.16e-34!73;UBERON:0005743!1.16e-34!73;UBERON:0004121!5.22e-33!102;UBERON:0000924!5.22e-33!102;UBERON:0006601!5.22e-33!102;UBERON:0002346!5.04e-30!71;UBERON:0003075!5.04e-30!71;UBERON:0007284!5.04e-30!71;UBERON:0000033!1.29e-27!63;UBERON:0001049!3.25e-26!52;UBERON:0005068!3.25e-26!52;UBERON:0006241!3.25e-26!52;UBERON:0007135!3.25e-26!52;UBERON:0000955!5.20e-26!50;UBERON:0006238!5.20e-26!50;UBERON:0002616!2.51e-25!49;UBERON:0003056!1.05e-22!49;UBERON:0003080!1.60e-20!40;UBERON:0002780!7.97e-20!39;UBERON:0001890!7.97e-20!39;UBERON:0006240!7.97e-20!39;UBERON:0002020!2.92e-17!34;UBERON:0002791!4.89e-15!29;UBERON:0003528!4.89e-15!29;UBERON:0001893!4.89e-15!29;UBERON:0000153!3.47e-14!94;UBERON:0007811!4.92e-14!86;UBERON:0000956!1.25e-10!21;UBERON:0001869!1.25e-10!21;UBERON:0000203!1.25e-10!21;UBERON:0002619!7.25e-09!17;UBERON:0002021!3.13e-07!10;UBERON:0000411!3.13e-07!10;UBERON:0001950!3.13e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.84e-36,75;UBERON:0001017,6.55e-36,73;UBERON:0004121,3.42e-32,95;UBERON:0000924,3.42e-32,95;UBERON:0006601,3.42e-32,95;UBERON:0002346,4.68e-30,64;UBERON:0003075,4.68e-30,64;UBERON:0007284,4.68e-30,64;UBERON:0000073,8.25e-29,54;UBERON:0001049,3.85e-27,52;UBERON:0005068,3.85e-27,52;UBERON:0006241,3.85e-27,52;UBERON:0007135,3.85e-27,52;UBERON:0000955,1.50e-24,47;UBERON:0006238,1.50e-24,47;UBERON:0010371,1.67e-24,73;UBERON:0002616,7.44e-24,46;UBERON:0003056,1.69e-23,49;UBERON:0003080,3.11e-21,40;UBERON:0002780,1.64e-20,39;UBERON:0001890,1.64e-20,39;UBERON:0006240,1.64e-20,39;UBERON:0010314,4.32e-20,92;UBERON:0002020,7.53e-18,34;UBERON:0003528,1.53e-15,29;UBERON:0002791,1.53e-15,29;UBERON:0001893,1.53e-15,29;UBERON:0000956,5.72e-11,21;UBERON:0001869,5.72e-11,21;UBERON:0000203,5.72e-11,21;UBERON:0002619,3.85e-09,17;UBERON:0002021,1.92e-07,10;UBERON:0000411,1.92e-07,10;UBERON:0001950,1.92e-07,10|phase1_expression=8.32774004944929,0.348975407639361,0,0,0,2.01455126294268,2.10251376535973,8.65126267058561,0.281577444303333,0.70219357896598,0.68487187290202,0.398860794976682,1.88320802924326,3.3219752919219,0.666219523631325,0.404950534779652,0,5.36285681109004,3.83920414096069,2.97072756258621,14.8825757764372,0,0,1.27993938234725,2.2940928106717,0,0.430761996159075,0.646413698057667,0,0.504060259519861,0,0.635030673459631,0,0,0,0.664938581433969,0.204169356262369,0,0,0,0,0,0,0.629484089877886,0.608261587317087,1.10128051297009,2.34717403304412,5.01457859675027,2.85592037554813,3.11087838518853,5.45947044338914,8.62515386189829,3.6912173332702,5.07753499407941,1.68046899571232,2.05807548828758,0.85960031981627,1.54701627683233,18.2084814773638,18.5146842745212,17.747279298173,2.71075625655306,0.889294796111139,0,0,0,5.69240209984969,8.83702102239575,15.7608210708886,14.1756235248275,13.4607975264884,21.1381728458815,14.5773237028065,13.35149711443,14.9518934788449,14.7075005857603,47.3498288297371,47.2443150915195,49.0004841087417,21.4974649000216,19.8528186617229,15.106487746146,46.902743832232,43.895483582471,39.5747461741938,12.9636577608414,14.0947963991112,16.7759501242771,2.80186915332781,10.8067330952703,2.02905142091174,3.44169550792555,0,0,0,0,1.96622188184453,0,0.259786004602869,0,9.43650912503759,0,2.54805239706646,0,0,1.01343946190039,0.505524445014783,2.39786147410026,4.40194402200192,5.49235914539852,2.94925055502431,4.26251669636998,4.61230994512117,5.27529241934179,5.99702406392095,2.38766523526383,5.43828929015623,1.44599356919912,0.884610551949874,0.323533699894818,1.32504911076236,0.484875253135222,1.86391761218122,21.6657789788545,24.5052646971742,0.510914110417183,0.599075622529601,0.599902730993408,0.381210681219194,43.8886573456131,29.7375391832107,16.3350657746724,35.1125126788398,35.8001640262463,44.0510654466267,39.4246269254651,1.83310854930569,0.995255764880744,3.0326731012041,6.10281382070775,3.3831315170303,3.44853156650209,5.04173963454978,5.42537344208574,8.300452896462,7.04625461566674,6.65282244374075,18.8853460639481,4.095791865724,3.59301552318857,4.57472922826267,1.97276159184817,1.668283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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=59033 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8JZR6 | |||
|association_with_transcript=0bp_to_ENSMUST00000023776,NM_021530,uc007xse.1_5end | |||
|cluster_id=chr15:100592172..100592228,+ | |||
|description=CAGE_peak_1_at_Slc4a8_5end | |||
|id=chr15:100592172..100592228,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.21e-15!44;CL:0000133!1.21e-15!44;CL:0002319!2.97e-15!43;CL:0000540!5.58e-14!33;CL:0000047!5.58e-14!33;CL:0000031!5.58e-14!33;CL:0000404!5.58e-14!33;CL:0000117!1.62e-12!23;CL:0000337!1.62e-12!23;CL:0000055!2.68e-12!50;CL:0000393!1.15e-10!39;CL:0000211!1.15e-10!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,3.58e-16,44;CL:0000133,3.58e-16,44;CL:0002319,9.12e-16,43;CL:0000540,1.91e-14,33;CL:0000047,1.91e-14,33;CL:0000031,1.91e-14,33;CL:0000404,1.91e-14,33;CL:0000117,6.29e-13,23;CL:0000337,6.29e-13,23;CL:0000393,1.48e-10,39;CL:0000211,1.48e-10,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!5.18e-35!75;UBERON:0001016!5.18e-35!75;UBERON:0001017!1.16e-34!73;UBERON:0005743!1.16e-34!73;UBERON:0004121!5.22e-33!102;UBERON:0000924!5.22e-33!102;UBERON:0006601!5.22e-33!102;UBERON:0002346!5.04e-30!71;UBERON:0003075!5.04e-30!71;UBERON:0007284!5.04e-30!71;UBERON:0000033!1.29e-27!63;UBERON:0001049!3.25e-26!52;UBERON:0005068!3.25e-26!52;UBERON:0006241!3.25e-26!52;UBERON:0007135!3.25e-26!52;UBERON:0000955!5.20e-26!50;UBERON:0006238!5.20e-26!50;UBERON:0002616!2.51e-25!49;UBERON:0003056!1.05e-22!49;UBERON:0003080!1.60e-20!40;UBERON:0002780!7.97e-20!39;UBERON:0001890!7.97e-20!39;UBERON:0006240!7.97e-20!39;UBERON:0002020!2.92e-17!34;UBERON:0002791!4.89e-15!29;UBERON:0003528!4.89e-15!29;UBERON:0001893!4.89e-15!29;UBERON:0000153!3.47e-14!94;UBERON:0007811!4.92e-14!86;UBERON:0000956!1.25e-10!21;UBERON:0001869!1.25e-10!21;UBERON:0000203!1.25e-10!21;UBERON:0002619!7.25e-09!17;UBERON:0002021!3.13e-07!10;UBERON:0000411!3.13e-07!10;UBERON:0001950!3.13e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.84e-36,75;UBERON:0001017,6.55e-36,73;UBERON:0004121,3.42e-32,95;UBERON:0000924,3.42e-32,95;UBERON:0006601,3.42e-32,95;UBERON:0002346,4.68e-30,64;UBERON:0003075,4.68e-30,64;UBERON:0007284,4.68e-30,64;UBERON:0000073,8.25e-29,54;UBERON:0001049,3.85e-27,52;UBERON:0005068,3.85e-27,52;UBERON:0006241,3.85e-27,52;UBERON:0007135,3.85e-27,52;UBERON:0000955,1.50e-24,47;UBERON:0006238,1.50e-24,47;UBERON:0010371,1.67e-24,73;UBERON:0002616,7.44e-24,46;UBERON:0003056,1.69e-23,49;UBERON:0003080,3.11e-21,40;UBERON:0002780,1.64e-20,39;UBERON:0001890,1.64e-20,39;UBERON:0006240,1.64e-20,39;UBERON:0010314,4.32e-20,92;UBERON:0002020,7.53e-18,34;UBERON:0003528,1.53e-15,29;UBERON:0002791,1.53e-15,29;UBERON:0001893,1.53e-15,29;UBERON:0000956,5.72e-11,21;UBERON:0001869,5.72e-11,21;UBERON:0000203,5.72e-11,21;UBERON:0002619,3.85e-09,17;UBERON:0002021,1.92e-07,10;UBERON:0000411,1.92e-07,10;UBERON:0001950,1.92e-07,10 | |||
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| |||
|short_description=p1@Slc4a8 | |||
}} |
Latest revision as of 12:33, 26 September 2015
Short description: | p1@Slc4a8 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Slc4a8_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000023776, NM_021530, uc007xse.1_5end |
EntrezGene: | Slc4a8 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 3.58e-16 | 44 |
neurectodermal cell | 3.58e-16 | 44 |
neural cell | 9.12e-16 | 43 |
neuron | 1.91e-14 | 33 |
neuronal stem cell | 1.91e-14 | 33 |
neuroblast | 1.91e-14 | 33 |
electrically signaling cell | 1.91e-14 | 33 |
CNS neuron (sensu Vertebrata) | 6.29e-13 | 23 |
neuroblast (sensu Vertebrata) | 6.29e-13 | 23 |
electrically responsive cell | 1.48e-10 | 39 |
electrically active cell | 1.48e-10 | 39 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.84e-36 | 75 |
central nervous system | 6.55e-36 | 73 |
ectoderm-derived structure | 3.42e-32 | 95 |
ectoderm | 3.42e-32 | 95 |
presumptive ectoderm | 3.42e-32 | 95 |
neurectoderm | 4.68e-30 | 64 |
neural plate | 4.68e-30 | 64 |
presumptive neural plate | 4.68e-30 | 64 |
regional part of nervous system | 8.25e-29 | 54 |
neural tube | 3.85e-27 | 52 |
neural rod | 3.85e-27 | 52 |
future spinal cord | 3.85e-27 | 52 |
neural keel | 3.85e-27 | 52 |
brain | 1.50e-24 | 47 |
future brain | 1.50e-24 | 47 |
ecto-epithelium | 1.67e-24 | 73 |
regional part of brain | 7.44e-24 | 46 |
pre-chordal neural plate | 1.69e-23 | 49 |
anterior neural tube | 3.11e-21 | 40 |
regional part of forebrain | 1.64e-20 | 39 |
forebrain | 1.64e-20 | 39 |
future forebrain | 1.64e-20 | 39 |
structure with developmental contribution from neural crest | 4.32e-20 | 92 |
gray matter | 7.53e-18 | 34 |
brain grey matter | 1.53e-15 | 29 |
regional part of telencephalon | 1.53e-15 | 29 |
telencephalon | 1.53e-15 | 29 |
cerebral cortex | 5.72e-11 | 21 |
cerebral hemisphere | 5.72e-11 | 21 |
pallium | 5.72e-11 | 21 |
regional part of cerebral cortex | 3.85e-09 | 17 |
occipital lobe | 1.92e-07 | 10 |
visual cortex | 1.92e-07 | 10 |
neocortex | 1.92e-07 | 10 |