FFCP PHASE1:Mm9::chr2:26771920..26771941,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(5 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20931 | |EntrezGene=20931 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q3TA91,P09926,Q4VAF7 | |UniProt=Q3TA91,P09926,Q4VAF7 | ||
|association_with_transcript=0bp_to_ENSMUST00000169746,NM_013678,uc008iwi.1,uc008iwj.1_5end | |association_with_transcript=0bp_to_ENSMUST00000169746,NM_013678,uc008iwi.1,uc008iwj.1_5end | ||
|cluster_id=chr2:26771920..26771941,+ | |||
|description=CAGE_peak_1_at_Surf2_5end | |description=CAGE_peak_1_at_Surf2_5end | ||
|id=chr2:26771920..26771941,+ | |id=chr2:26771920..26771941,+ | ||
|ontology_enrichment_celltype=CL:0000542!7.92e-08!13;CL:0000051!7.92e-08!13;CL:0000838!8.23e-08!12;CL:0000084!2.37e-07!11;CL:0000827!2.37e-07!11;CL:0000791!5.68e-07!9;CL:0000789!5.68e-07!9;CL:0002420!5.68e-07!9;CL:0002419!5.68e-07!9;CL:0000790!5.68e-07!9 | |||
|ontology_enrichment_celltype_v019_2=CL:0000542,7.92e-08,13;CL:0000051,7.92e-08,13;CL:0000838,8.23e-08,12;CL:0000084,2.37e-07,11;CL:0000827,2.37e-07,11;CL:0000791,5.68e-07,9;CL:0000789,5.68e-07,9;CL:0002420,5.68e-07,9;CL:0002419,5.68e-07,9;CL:0000790,5.68e-07,9 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.49e-13!63;UBERON:0002346!5.42e-12!71;UBERON:0003075!5.42e-12!71;UBERON:0007284!5.42e-12!71;UBERON:0004121!9.83e-12!102;UBERON:0000924!9.83e-12!102;UBERON:0006601!9.83e-12!102;UBERON:0000955!2.19e-11!50;UBERON:0006238!2.19e-11!50;UBERON:0000073!2.54e-11!75;UBERON:0001016!2.54e-11!75;UBERON:0007811!5.80e-11!86;UBERON:0001049!6.73e-11!52;UBERON:0005068!6.73e-11!52;UBERON:0006241!6.73e-11!52;UBERON:0007135!6.73e-11!52;UBERON:0000153!7.31e-11!94;UBERON:0002616!8.11e-11!49;UBERON:0003056!1.18e-10!49;UBERON:0001017!2.33e-10!73;UBERON:0005743!2.33e-10!73;UBERON:0003080!1.38e-09!40;UBERON:0002780!4.80e-09!39;UBERON:0001890!4.80e-09!39;UBERON:0006240!4.80e-09!39;UBERON:0002020!7.74e-09!34;UBERON:0002791!3.09e-08!29;UBERON:0003528!3.09e-08!29;UBERON:0001893!3.09e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,6.22e-12,92;UBERON:0002346,8.62e-12,64;UBERON:0003075,8.62e-12,64;UBERON:0007284,8.62e-12,64;UBERON:0000073,1.54e-11,54;UBERON:0001016,2.54e-11,75;UBERON:0004121,2.61e-11,95;UBERON:0000924,2.61e-11,95;UBERON:0006601,2.61e-11,95;UBERON:0001049,6.73e-11,52;UBERON:0005068,6.73e-11,52;UBERON:0006241,6.73e-11,52;UBERON:0007135,6.73e-11,52;UBERON:0003056,1.18e-10,49;UBERON:0010371,1.28e-10,73;UBERON:0001017,2.33e-10,73;UBERON:0000955,3.33e-10,47;UBERON:0006238,3.33e-10,47;UBERON:0002616,1.18e-09,46;UBERON:0003080,1.38e-09,40;UBERON:0002780,4.80e-09,39;UBERON:0001890,4.80e-09,39;UBERON:0006240,4.80e-09,39;UBERON:0002020,7.74e-09,34;UBERON:0003528,3.09e-08,29;UBERON:0002791,3.09e-08,29;UBERON:0001893,3.09e-08,29 | |||
|phase1_expression=20.0186058880992,5.23463111459042,1.81999695755814,2.11724947914781,1.50268718983904,10.7442734023609,8.64366770203445,23.5004448663669,72.5061919081084,69.0490352649881,76.1919958603497,75.2251459326022,27.5633175189241,35.9297853942079,17.6548173762301,18.8301998672538,12.5921138063066,20.1895785829272,18.7846774039862,20.3707032863054,15.818051968099,17.4752074113558,20.373583552837,9.43955294481099,9.40578052375397,5.7423196411502,4.30761996159075,7.11055067863434,6.27077284206034,4.53654233567875,10.199603490144,13.3356441426523,19.6820732027062,31.6963362030877,12.9983228888074,11.6364251750945,11.0251452381679,2.51118978442145,4.6880120671428,5.75876118371178,4.1176204162171,4.09827290975067,3.39857247121808,20.2693876940679,21.086401693659,15.4179271815813,3.12956537739216,4.79655344036982,7.24964403023757,9.52706505463989,7.41928034614421,4.31257693094915,23.6573474541408,26.1130371124084,27.559691529682,12.0911934936895,14.3266719969378,10.3134418455488,17.601532094785,16.9277113367051,16.4796164911607,4.74382344896785,6.22506357277798,6.29929802096979,6.92206453796882,9.2362414942993,4.49400165777607,9.22123932771731,14.2054768862614,16.7407363531296,14.7227472945967,17.7103610330358,13.693849539,16.6587486932338,15.814502718009,9.19218786610021,23.1243350098716,21.4514727983115,20.5832754563366,19.7829431595291,21.0421580285542,23.4411016750542,24.0097379141188,23.0732670112989,22.6141406709679,18.2669722993674,18.2235751422852,16.2167517868012,61.9440261465446,25.014186395346,11.5945795480671,12.9063581547208,9.51959867190851,11.3337670243942,12.9955283489534,10.7526452903361,17.9768857768642,14.4865774191349,19.743736349818,15.9002808529653,17.3237406325317,11.5493829672886,12.7402619853323,0,12.5564803786504,9.88103475352884,12.6381111253696,11.7609396110632,21.4918443427153,20.4850151909458,13.7053408145247,12.7875500891099,13.3756988408514,18.6896074285252,14.8161770990988,15.4569907335501,11.3709685157812,14.6045350489111,11.4999371753484,13.5884153955824,11.7046004784009,9.69750506270444,7.45567044872489,26.0574909340277,18.0124167859571,10.4737392635522,13.1796636956512,23.3962065087429,16.5191295194984,33.1037313084658,37.5150494311274,27.6439574648302,31.6360262749943,26.338692105024,33.2460871295296,28.2299797737898,7.43427356107309,12.5651040316194,18.9542068825256,13.6787206326208,20.0385482162564,18.3921683546778,18.3663372401456,14.6183673300644,14.4917743192328,14.9893052733274,15.6481880014747,21.7310831420773,15.5208954911646,14.5611681729221,14.4279921814438,14.0285268753648,11.9560317167007,12.1888258282758,14.610531684964,11.7430217422911,12.6398373716382,19.3010930336036,19.6072814582959,11.8061690345236,13.6025114789036,15.6653993471083,11.8372367792605,15.9379027715397,15.2724441758504,16.9749779667798,15.0233104783787,14.1286064264275,16.6205448412615,15.431741623435,13.7816976227955,15.0585987048092,14.9294078397914,14.3600868073598,28.1788531075931,24.0796792967526,4.95628174475697,10.8424732332053,16.6364835417482,14.1664369834868,14.0465532841082,13.9161631990106,14.8993289376063,14.6473732106671,10.9141684155238,18.7756808385372,11.0587491872119,11.7384318504279,14.622306533934,7.19055526923377,10.8069024937347,8.76221602319216,17.2597789867304,10.3966146474853,15.7790829942313,11.8117770150282,15.9041039477453,11.7828177415735,14.4811670014549,18.0084380535115,15.8568715119789,16.9054114572867,21.937494404449,25.1936109631302,28.107936301188,19.7878658898671,17.4459704394113,12.3000351473733,15.2775511068852,15.8232875597946,11.1873306474774,10.7078951143352,10.0637744569148,11.9085103253921,11.5453939052387,16.6702059445094,13.6342034276653,18.8152973331713,11.6394509804961,14.4013472945568,13.0371981153621,12.3913912615887,12.2038929110021,9.04533790185805,9.28370199455454,5.07347484430277,11.3497303756458,8.19419351700467,12.2780171866265,12.9452018625433,10.0157289482219,12.150520920847,12.0633027151418,13.053736411649,13.769399644533,12.417153583713,31.9495674075706,33.2881189921857,14.0984053023941,12.876017287423,12.9358369960665,13.2749173060857,16.3721782276927,15.7719406648684,14.4819138153556,11.3230612315533,18.2164815753702,14.9050487534769,15.8115111178609,33.4174169078679,17.0328102249922,12.9987890677096,8.95878276444668,23.7556977080451,33.1862845849907,12.1390318077491,13.9068836203785,13.7681708221806,10.6308681437078,16.908933136916,12.6629863652428,12.3601468022352,13.5469003786194,20.8584260237639,22.1379078007497,20.6271086496374,23.8307724027652,12.0640933000978,17.7221396782374,10.7168517515796,21.4581682707151,14.9829806785739,17.9358432456312,12.7875278628132,15.2536610241412,7.41412248023371,12.7906470871878,10.8824926941377,12.9171541356724,13.148217634338,13.4890748723544,12.8029901801148,11.9507143018239,32.8202784558602,15.036637510211,10.1129565301979,20.3713980106683,16.5764242164128,18.8638034255015,13.9554685655979,14.10820968949,15.3946597556024,13.2671974852247,27.6854479224383,13.6024477239888,9.96265388921559,10.5845234005365,13.381650944926,12.4466661335321,10.7891477107857,10.1663750542163,8.37619014348895,12.3134224627203,14.2908042009993,8.45539408026285,13.0079395058262,12.5748452747394,9.91701060554643,11.4952242895181,10.8131920314098,10.3274370008263,11.0673727117358,13.8414334641938,13.7702948870823,9.21696020025169,9.16432249821717,12.5689633479902,17.3581517608558,19.8778859156026,11.6367352183863,12.715606706001,14.0628675938364,10.7813354837441,12.6208062435185,10.897573351665,13.0065778826524,10.8178247621125,11.2567854719185,10.1682904897965,18.8186218400625,0.443971906748129,15.6102110500488,11.9198077618496,13.5232715822533,14.2638681342898,15.3847364384503,12.2189976075068,18.0565957452731,27.1080884456192,31.7624413189952,20.0513429703789,23.8875923457726,21.2375581128899,25.6833925112498,25.6508550088086,27.0192721934532,21.7508356312418,23.2992140288319,18.0589984796467,15.9609949360412,16.561159758151,15.3157231753025,17.8171188233785,10.6629234901008,13.5570503958985,11.5379632053781,12.194929964489,12.6348605881899,10.8996098952803,15.0901073108861,12.5479620009642,13.0611310905933,11.5445292600783,10.9547548995107,12.1678542242098,14.8540099757053,13.1867488257058,15.6030855342461,12.0004238334895,12.4233064311536,11.4449371174714,13.6625631634389,13.3635320189769,12.9460350074265,12.073246209603,11.8381370147029,14.5310401815072,8.41713407486608,12.931216975535,11.8205378850676,11.4584692087513,13.634442024365,11.1885834369062,15.9878769880285,14.5037597236153,14.6112316752843,12.4337415844748,12.3531194706929,13.9120701372253 | |phase1_expression=20.0186058880992,5.23463111459042,1.81999695755814,2.11724947914781,1.50268718983904,10.7442734023609,8.64366770203445,23.5004448663669,72.5061919081084,69.0490352649881,76.1919958603497,75.2251459326022,27.5633175189241,35.9297853942079,17.6548173762301,18.8301998672538,12.5921138063066,20.1895785829272,18.7846774039862,20.3707032863054,15.818051968099,17.4752074113558,20.373583552837,9.43955294481099,9.40578052375397,5.7423196411502,4.30761996159075,7.11055067863434,6.27077284206034,4.53654233567875,10.199603490144,13.3356441426523,19.6820732027062,31.6963362030877,12.9983228888074,11.6364251750945,11.0251452381679,2.51118978442145,4.6880120671428,5.75876118371178,4.1176204162171,4.09827290975067,3.39857247121808,20.2693876940679,21.086401693659,15.4179271815813,3.12956537739216,4.79655344036982,7.24964403023757,9.52706505463989,7.41928034614421,4.31257693094915,23.6573474541408,26.1130371124084,27.559691529682,12.0911934936895,14.3266719969378,10.3134418455488,17.601532094785,16.9277113367051,16.4796164911607,4.74382344896785,6.22506357277798,6.29929802096979,6.92206453796882,9.2362414942993,4.49400165777607,9.22123932771731,14.2054768862614,16.7407363531296,14.7227472945967,17.7103610330358,13.693849539,16.6587486932338,15.814502718009,9.19218786610021,23.1243350098716,21.4514727983115,20.5832754563366,19.7829431595291,21.0421580285542,23.4411016750542,24.0097379141188,23.0732670112989,22.6141406709679,18.2669722993674,18.2235751422852,16.2167517868012,61.9440261465446,25.014186395346,11.5945795480671,12.9063581547208,9.51959867190851,11.3337670243942,12.9955283489534,10.7526452903361,17.9768857768642,14.4865774191349,19.743736349818,15.9002808529653,17.3237406325317,11.5493829672886,12.7402619853323,0,12.5564803786504,9.88103475352884,12.6381111253696,11.7609396110632,21.4918443427153,20.4850151909458,13.7053408145247,12.7875500891099,13.3756988408514,18.6896074285252,14.8161770990988,15.4569907335501,11.3709685157812,14.6045350489111,11.4999371753484,13.5884153955824,11.7046004784009,9.69750506270444,7.45567044872489,26.0574909340277,18.0124167859571,10.4737392635522,13.1796636956512,23.3962065087429,16.5191295194984,33.1037313084658,37.5150494311274,27.6439574648302,31.6360262749943,26.338692105024,33.2460871295296,28.2299797737898,7.43427356107309,12.5651040316194,18.9542068825256,13.6787206326208,20.0385482162564,18.3921683546778,18.3663372401456,14.6183673300644,14.4917743192328,14.9893052733274,15.6481880014747,21.7310831420773,15.5208954911646,14.5611681729221,14.4279921814438,14.0285268753648,11.9560317167007,12.1888258282758,14.610531684964,11.7430217422911,12.6398373716382,19.3010930336036,19.6072814582959,11.8061690345236,13.6025114789036,15.6653993471083,11.8372367792605,15.9379027715397,15.2724441758504,16.9749779667798,15.0233104783787,14.1286064264275,16.6205448412615,15.431741623435,13.7816976227955,15.0585987048092,14.9294078397914,14.3600868073598,28.1788531075931,24.0796792967526,4.95628174475697,10.8424732332053,16.6364835417482,14.1664369834868,14.0465532841082,13.9161631990106,14.8993289376063,14.6473732106671,10.9141684155238,18.7756808385372,11.0587491872119,11.7384318504279,14.622306533934,7.19055526923377,10.8069024937347,8.76221602319216,17.2597789867304,10.3966146474853,15.7790829942313,11.8117770150282,15.9041039477453,11.7828177415735,14.4811670014549,18.0084380535115,15.8568715119789,16.9054114572867,21.937494404449,25.1936109631302,28.107936301188,19.7878658898671,17.4459704394113,12.3000351473733,15.2775511068852,15.8232875597946,11.1873306474774,10.7078951143352,10.0637744569148,11.9085103253921,11.5453939052387,16.6702059445094,13.6342034276653,18.8152973331713,11.6394509804961,14.4013472945568,13.0371981153621,12.3913912615887,12.2038929110021,9.04533790185805,9.28370199455454,5.07347484430277,11.3497303756458,8.19419351700467,12.2780171866265,12.9452018625433,10.0157289482219,12.150520920847,12.0633027151418,13.053736411649,13.769399644533,12.417153583713,31.9495674075706,33.2881189921857,14.0984053023941,12.876017287423,12.9358369960665,13.2749173060857,16.3721782276927,15.7719406648684,14.4819138153556,11.3230612315533,18.2164815753702,14.9050487534769,15.8115111178609,33.4174169078679,17.0328102249922,12.9987890677096,8.95878276444668,23.7556977080451,33.1862845849907,12.1390318077491,13.9068836203785,13.7681708221806,10.6308681437078,16.908933136916,12.6629863652428,12.3601468022352,13.5469003786194,20.8584260237639,22.1379078007497,20.6271086496374,23.8307724027652,12.0640933000978,17.7221396782374,10.7168517515796,21.4581682707151,14.9829806785739,17.9358432456312,12.7875278628132,15.2536610241412,7.41412248023371,12.7906470871878,10.8824926941377,12.9171541356724,13.148217634338,13.4890748723544,12.8029901801148,11.9507143018239,32.8202784558602,15.036637510211,10.1129565301979,20.3713980106683,16.5764242164128,18.8638034255015,13.9554685655979,14.10820968949,15.3946597556024,13.2671974852247,27.6854479224383,13.6024477239888,9.96265388921559,10.5845234005365,13.381650944926,12.4466661335321,10.7891477107857,10.1663750542163,8.37619014348895,12.3134224627203,14.2908042009993,8.45539408026285,13.0079395058262,12.5748452747394,9.91701060554643,11.4952242895181,10.8131920314098,10.3274370008263,11.0673727117358,13.8414334641938,13.7702948870823,9.21696020025169,9.16432249821717,12.5689633479902,17.3581517608558,19.8778859156026,11.6367352183863,12.715606706001,14.0628675938364,10.7813354837441,12.6208062435185,10.897573351665,13.0065778826524,10.8178247621125,11.2567854719185,10.1682904897965,18.8186218400625,0.443971906748129,15.6102110500488,11.9198077618496,13.5232715822533,14.2638681342898,15.3847364384503,12.2189976075068,18.0565957452731,27.1080884456192,31.7624413189952,20.0513429703789,23.8875923457726,21.2375581128899,25.6833925112498,25.6508550088086,27.0192721934532,21.7508356312418,23.2992140288319,18.0589984796467,15.9609949360412,16.561159758151,15.3157231753025,17.8171188233785,10.6629234901008,13.5570503958985,11.5379632053781,12.194929964489,12.6348605881899,10.8996098952803,15.0901073108861,12.5479620009642,13.0611310905933,11.5445292600783,10.9547548995107,12.1678542242098,14.8540099757053,13.1867488257058,15.6030855342461,12.0004238334895,12.4233064311536,11.4449371174714,13.6625631634389,13.3635320189769,12.9460350074265,12.073246209603,11.8381370147029,14.5310401815072,8.41713407486608,12.931216975535,11.8205378850676,11.4584692087513,13.634442024365,11.1885834369062,15.9878769880285,14.5037597236153,14.6112316752843,12.4337415844748,12.3531194706929,13.9120701372253 | ||
|short_description=p1@Surf2 | |short_description=p1@Surf2 | ||
}} | }} |
Latest revision as of 11:19, 26 September 2015
Short description: | p1@Surf2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Surf2_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000169746, NM_013678, uc008iwi.1, uc008iwj.1_5end |
EntrezGene: | Surf2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
lymphocyte | 7.92e-08 | 13 |
common lymphoid progenitor | 7.92e-08 | 13 |
lymphoid lineage restricted progenitor cell | 8.23e-08 | 12 |
T cell | 2.37e-07 | 11 |
pro-T cell | 2.37e-07 | 11 |
mature alpha-beta T cell | 5.68e-07 | 9 |
alpha-beta T cell | 5.68e-07 | 9 |
immature T cell | 5.68e-07 | 9 |
mature T cell | 5.68e-07 | 9 |
immature alpha-beta T cell | 5.68e-07 | 9 |
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 6.22e-12 | 92 |
neurectoderm | 8.62e-12 | 64 |
neural plate | 8.62e-12 | 64 |
presumptive neural plate | 8.62e-12 | 64 |
regional part of nervous system | 1.54e-11 | 54 |
nervous system | 2.54e-11 | 75 |
ectoderm-derived structure | 2.61e-11 | 95 |
ectoderm | 2.61e-11 | 95 |
presumptive ectoderm | 2.61e-11 | 95 |
neural tube | 6.73e-11 | 52 |
neural rod | 6.73e-11 | 52 |
future spinal cord | 6.73e-11 | 52 |
neural keel | 6.73e-11 | 52 |
pre-chordal neural plate | 1.18e-10 | 49 |
ecto-epithelium | 1.28e-10 | 73 |
central nervous system | 2.33e-10 | 73 |
brain | 3.33e-10 | 47 |
future brain | 3.33e-10 | 47 |
regional part of brain | 1.18e-09 | 46 |
anterior neural tube | 1.38e-09 | 40 |
regional part of forebrain | 4.80e-09 | 39 |
forebrain | 4.80e-09 | 39 |
future forebrain | 4.80e-09 | 39 |
gray matter | 7.74e-09 | 34 |
brain grey matter | 3.09e-08 | 29 |
regional part of telencephalon | 3.09e-08 | 29 |
telencephalon | 3.09e-08 | 29 |