FFCP PHASE1:Mm9::chr4:132567709..132567737,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=230793 | |EntrezGene=230793 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-15bp_to_ENSMUST00000156677_5end | |association_with_transcript=-15bp_to_ENSMUST00000156677_5end | ||
|cluster_id=chr4:132567709..132567737,+ | |||
|description=CAGE_peak_2_at_Ahdc1_5end | |description=CAGE_peak_2_at_Ahdc1_5end | ||
|id=chr4:132567709..132567737,+ | |id=chr4:132567709..132567737,+ | ||
|ontology_enrichment_celltype=CL:0000540!6.59e-08!33;CL:0000047!6.59e-08!33;CL:0000031!6.59e-08!33;CL:0000404!6.59e-08!33;CL:0002319!2.08e-07!43;CL:0000221!5.28e-07!44;CL:0000133!5.28e-07!44;CL:0000117!8.15e-07!23;CL:0000337!8.15e-07!23 | |ontology_enrichment_celltype=CL:0000540!6.59e-08!33;CL:0000047!6.59e-08!33;CL:0000031!6.59e-08!33;CL:0000404!6.59e-08!33;CL:0002319!2.08e-07!43;CL:0000221!5.28e-07!44;CL:0000133!5.28e-07!44;CL:0000117!8.15e-07!23;CL:0000337!8.15e-07!23 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.12e-08,33;CL:0000047,6.12e-08,33;CL:0000031,6.12e-08,33;CL:0000404,6.12e-08,33;CL:0002319,1.49e-07,43;CL:0000221,5.17e-07,44;CL:0000133,5.17e-07,44;CL:0000117,8.60e-07,23;CL:0000337,8.60e-07,23 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!9.79e-17!73;UBERON:0005743!9.79e-17!73;UBERON:0004121!2.01e-16!102;UBERON:0000924!2.01e-16!102;UBERON:0006601!2.01e-16!102;UBERON:0000073!2.87e-15!75;UBERON:0001016!2.87e-15!75;UBERON:0002346!3.64e-15!71;UBERON:0003075!3.64e-15!71;UBERON:0007284!3.64e-15!71;UBERON:0002020!6.71e-14!34;UBERON:0001049!7.99e-14!52;UBERON:0005068!7.99e-14!52;UBERON:0006241!7.99e-14!52;UBERON:0007135!7.99e-14!52;UBERON:0003056!3.25e-13!49;UBERON:0000955!5.79e-13!50;UBERON:0006238!5.79e-13!50;UBERON:0002780!1.24e-12!39;UBERON:0001890!1.24e-12!39;UBERON:0006240!1.24e-12!39;UBERON:0000033!1.36e-12!63;UBERON:0003080!1.61e-12!40;UBERON:0002791!2.18e-12!29;UBERON:0003528!2.18e-12!29;UBERON:0001893!2.18e-12!29;UBERON:0002616!2.21e-12!49;UBERON:0000956!6.48e-12!21;UBERON:0001869!6.48e-12!21;UBERON:0000203!6.48e-12!21;UBERON:0002619!2.50e-09!17;UBERON:0000153!1.77e-07!94 | |ontology_enrichment_uberon=UBERON:0001017!9.79e-17!73;UBERON:0005743!9.79e-17!73;UBERON:0004121!2.01e-16!102;UBERON:0000924!2.01e-16!102;UBERON:0006601!2.01e-16!102;UBERON:0000073!2.87e-15!75;UBERON:0001016!2.87e-15!75;UBERON:0002346!3.64e-15!71;UBERON:0003075!3.64e-15!71;UBERON:0007284!3.64e-15!71;UBERON:0002020!6.71e-14!34;UBERON:0001049!7.99e-14!52;UBERON:0005068!7.99e-14!52;UBERON:0006241!7.99e-14!52;UBERON:0007135!7.99e-14!52;UBERON:0003056!3.25e-13!49;UBERON:0000955!5.79e-13!50;UBERON:0006238!5.79e-13!50;UBERON:0002780!1.24e-12!39;UBERON:0001890!1.24e-12!39;UBERON:0006240!1.24e-12!39;UBERON:0000033!1.36e-12!63;UBERON:0003080!1.61e-12!40;UBERON:0002791!2.18e-12!29;UBERON:0003528!2.18e-12!29;UBERON:0001893!2.18e-12!29;UBERON:0002616!2.21e-12!49;UBERON:0000956!6.48e-12!21;UBERON:0001869!6.48e-12!21;UBERON:0000203!6.48e-12!21;UBERON:0002619!2.50e-09!17;UBERON:0000153!1.77e-07!94 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,6.20e-17,73;UBERON:0004121,8.42e-16,95;UBERON:0000924,8.42e-16,95;UBERON:0006601,8.42e-16,95;UBERON:0001016,1.48e-15,75;UBERON:0002346,8.19e-15,64;UBERON:0003075,8.19e-15,64;UBERON:0007284,8.19e-15,64;UBERON:0000073,4.45e-14,54;UBERON:0002020,4.45e-14,34;UBERON:0010314,4.83e-14,92;UBERON:0001049,6.66e-14,52;UBERON:0005068,6.66e-14,52;UBERON:0006241,6.66e-14,52;UBERON:0007135,6.66e-14,52;UBERON:0003056,2.05e-13,49;UBERON:0010371,2.35e-13,73;UBERON:0000955,2.67e-13,47;UBERON:0006238,2.67e-13,47;UBERON:0002780,8.58e-13,39;UBERON:0001890,8.58e-13,39;UBERON:0006240,8.58e-13,39;UBERON:0002616,1.08e-12,46;UBERON:0003080,1.11e-12,40;UBERON:0003528,1.66e-12,29;UBERON:0002791,1.66e-12,29;UBERON:0001893,1.66e-12,29;UBERON:0000956,2.69e-12,21;UBERON:0001869,2.69e-12,21;UBERON:0000203,2.69e-12,21;UBERON:0002619,1.29e-09,17 | |||
|phase1_expression=1.44133962394315,0.348975407639361,0.909998478779072,0,0,0.671517087647559,0.934450562382103,0.516493293766305,0.140788722151667,0.234064526321993,0.171217968225505,0,0.171200729931206,0.34968160967599,0,0,0,0,0.274228867211478,0.42438965179803,2.38121212422995,1.29078236561151,2.61199789138935,0.47997726838022,0.22940928106717,0.57423196411502,0.430761996159075,0.430942465371778,0,0,0.443461021310609,0.635030673459631,0,0,0,0.332469290716985,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.811015449756117,0.183546752161682,5.47673941043627,1.09012578190223,1.97717564461025,3.88859798148567,1.95980990275508,1.43752564364972,1.00669563634642,0,0.672187598284928,2.05807548828758,2.57880095944881,0.515672092277442,4.65327859977075,4.23192783417626,1.26766280701236,2.03306719241479,1.77858959222228,0.899899717281399,0,0.7104801149461,3.89480143673926,2.68952813725088,8.39885859698669,10.3954572515402,6.52007380189284,3.42781181284564,3.09215957332259,3.91970557487853,5.46319184803947,3.67687514644008,1.10115880999389,2.29837208553338,2.4577045320999,4.74790635828698,6.95306091378313,4.68822033501084,0.837548997004143,1.12552522006336,3.0559649555362,4.12480019663135,2.70506193518296,2.98239113320481,0.227178579999552,0.226714680320357,1.44932244350839,0,0,0,1.29955283489534,0.448026887097336,0.842666520790511,1.87473354835864,2.59786004602869,0.35333957451034,0.704217098883403,1.28326477414318,7.64415719119937,0,0,0,0,1.25602267690966,0,1.63286352971307,1.73485326766136,3.34912026143355,2.99800146432876,1.50722640552623,2.70454026412121,2.38766523526383,3.95511948374998,2.16899035379867,0.884610551949874,2.10296904931632,1.10420759230197,2.90925151881133,0,4.39171195517321,4.39838084308256,0.255457055208591,1.07833612055328,0,0.635351135365324,1.9472783122627,2.28750301409313,2.51308704225729,6.60532416730651,3.06858548796397,1.87009240103604,1.94689515681309,2.64782346010822,1.99051152976149,1.76905930903572,1.47309299120532,1.04096354370163,1.37941262660084,3.24111833649629,2.86339153887859,2.85753296435577,3.45907044769094,2.90475346135159,3.62184719034622,1.72454394346274,4.34943984385984,2.63926686245923,3.5071317188412,4.44875598760957,3.48252166522167,4.7329891373827,3.38358253591438,0,0.51469581422943,0,1.65700618028402,1.40715635988658,1.62055855314913,1.89395788468168,3.73852040320067,2.00547246753592,2.55787339225449,2.14618721119695,1.75148013550754,1.31647879930784,3.94001913789829,1.70244500046297,3.50879969820798,1.97595103761946,0.939444931322602,7.14985825118033,8.54108282748061,0.330418782983798,0,2.13288250535234,3.25131340604614,2.57734922644187,1.61346819698674,1.33426826306922,0.570676878337677,1.42358718463353,0.988193728344065,1.75934646160189,0.198956472041151,0.779856348476481,0,0.216138049874694,0.199141273254367,2.0863469104839,1.94222471436539,0,1.62921062276251,2.71533482034676,1.40271639780637,3.79419222745544,1.18088118383682,1.255989822731,0.493588655687202,0.296452627087149,1.16791574001266,0,0.449724224769707,0.405720242777006,0.72353147925725,0.50925170356284,0.863088412352432,0.324270453550071,0.274561413188081,4.31304619582064,0.372140947668503,0.936113019343682,0.505157755894224,0.717589654087649,0.482443521363367,0.369506380333209,1.51593129416388,1.95557971730431,2.8856664581782,1.40814148973101,2.1775813467436,2.85652369063216,3.31727201358258,2.99506773801763,2.87904096543407,3.18909537314974,1.3109065177259,3.10832967358612,1.44649058581512,0,0.54390568381871,0.491764273019036,2.48343071674259,0.642202359951168,1.40654023910644,0.819674726883377,1.26235463602186,1.26203287766503,2.73307121007647,2.36965737506079,3.10659437338318,3.11918143715352,3.39691836946599,2.42886421004937,4.09158201075837,2.37172666767914,7.06906896127976,1.27746076687442,4.27357448801413,2.11753047159649,3.13443233647817,0,4.61283208694465,1.81394134178851,1.88605079755898,4.13422650033082,3.07435147943927,2.06742634534577,2.18120237686503,2.49548164869305,0.632073515871632,1.05418608574999,0,3.06395645178409,1.8006109403131,2.8458910432206,2.7863814554107,1.95074257006501,2.67553226403106,2.30368628842969,2.74018454203139,1.64270195644597,1.48282449604674,0.220528398054962,2.96795255294664,1.45317984026315,2.17126529741361,1.67121281604391,1.80554989719567,0.874442509889552,1.11255181206306,0.341741761595705,5.77883230297023,3.51869602002452,0.565105371014073,0.546776910884101,0.915112692826091,0.509935289981566,0.979660166265606,0.690999869022119,0.954670618015114,2.21435195506795,2.64315307264903,1.94409613479242,2.29997125615916,3.05707589244649,2.29269388854195,1.1571483801547,0.785267825952089,0.518459893167171,1.24267862617385,0,3.43888055901151,1.48912641411388,4.083474955225,3.35815541042101,1.85851738039856,4.3422178298929,2.3436789271911,1.78260885523708,0.724752362478018,0.288030006257865,2.21207784439725,1.82452693761148,1.64337531463724,0.389762468933385,1.43221356533985,0.198681354781265,0.721172697119813,1.03382669022204,1.21159739937777,1.143102099825,1.10908803650525,1.26695244961678,1.73181314952593,0.818138315270983,1.58711268530648,0.665957860122194,0.717710852875806,1.17519231454855,1.15913756419314,1.12609485270709,2.38097111547445,1.2862102744744,0.501572104035363,7.34177395402186,8.28585425712918,6.87474616127276,12.0297227640581,1.37016503954128,7.55393897389701,6.75022500231806,7.20513925158753,7.25027854374727,4.14208249401456,1.66059756134683,1.59609949360412,0.682934423016537,4.132814190161,1.88651846365184,1.83843508450014,1.55572709461131,4.53277125925567,2.24643446714271,0.758091635291392,1.2673964994512,2.82939512079114,3.37109426891577,3.77748399188729,4.02048282689293,2.38146845641537,3.36064545240081,2.50781986602817,1.64834360321323,3.82717192349433,3.42869252385415,3.54951612318675,2.86123427936785,2.47088908274958,3.85848459702856,2.11536519729191,2.37806364734604,2.10455769150274,3.39510284614654,3.36685362994643,2.37270036248348,2.1670986122624,1.22769312950907,3.25367366490529,2.89359916471712,2.49810577937946,1.87145286756327,1.71896843238639,2.10417165275728,1.98532277207564,2.08681052058379 | |phase1_expression=1.44133962394315,0.348975407639361,0.909998478779072,0,0,0.671517087647559,0.934450562382103,0.516493293766305,0.140788722151667,0.234064526321993,0.171217968225505,0,0.171200729931206,0.34968160967599,0,0,0,0,0.274228867211478,0.42438965179803,2.38121212422995,1.29078236561151,2.61199789138935,0.47997726838022,0.22940928106717,0.57423196411502,0.430761996159075,0.430942465371778,0,0,0.443461021310609,0.635030673459631,0,0,0,0.332469290716985,0.612508068787107,0,0,0,0,0,0,0.251793635951155,0.811015449756117,0.183546752161682,5.47673941043627,1.09012578190223,1.97717564461025,3.88859798148567,1.95980990275508,1.43752564364972,1.00669563634642,0,0.672187598284928,2.05807548828758,2.57880095944881,0.515672092277442,4.65327859977075,4.23192783417626,1.26766280701236,2.03306719241479,1.77858959222228,0.899899717281399,0,0.7104801149461,3.89480143673926,2.68952813725088,8.39885859698669,10.3954572515402,6.52007380189284,3.42781181284564,3.09215957332259,3.91970557487853,5.46319184803947,3.67687514644008,1.10115880999389,2.29837208553338,2.4577045320999,4.74790635828698,6.95306091378313,4.68822033501084,0.837548997004143,1.12552522006336,3.0559649555362,4.12480019663135,2.70506193518296,2.98239113320481,0.227178579999552,0.226714680320357,1.44932244350839,0,0,0,1.29955283489534,0.448026887097336,0.842666520790511,1.87473354835864,2.59786004602869,0.35333957451034,0.704217098883403,1.28326477414318,7.64415719119937,0,0,0,0,1.25602267690966,0,1.63286352971307,1.73485326766136,3.34912026143355,2.99800146432876,1.50722640552623,2.70454026412121,2.38766523526383,3.95511948374998,2.16899035379867,0.884610551949874,2.10296904931632,1.10420759230197,2.90925151881133,0,4.39171195517321,4.39838084308256,0.255457055208591,1.07833612055328,0,0.635351135365324,1.9472783122627,2.28750301409313,2.51308704225729,6.60532416730651,3.06858548796397,1.87009240103604,1.94689515681309,2.64782346010822,1.99051152976149,1.76905930903572,1.47309299120532,1.04096354370163,1.37941262660084,3.24111833649629,2.86339153887859,2.85753296435577,3.45907044769094,2.90475346135159,3.62184719034622,1.72454394346274,4.34943984385984,2.63926686245923,3.5071317188412,4.44875598760957,3.48252166522167,4.7329891373827,3.38358253591438,0,0.51469581422943,0,1.65700618028402,1.40715635988658,1.62055855314913,1.89395788468168,3.73852040320067,2.00547246753592,2.55787339225449,2.14618721119695,1.75148013550754,1.31647879930784,3.94001913789829,1.70244500046297,3.50879969820798,1.97595103761946,0.939444931322602,7.14985825118033,8.54108282748061,0.330418782983798,0,2.13288250535234,3.25131340604614,2.57734922644187,1.61346819698674,1.33426826306922,0.570676878337677,1.42358718463353,0.988193728344065,1.75934646160189,0.198956472041151,0.779856348476481,0,0.216138049874694,0.199141273254367,2.0863469104839,1.94222471436539,0,1.62921062276251,2.71533482034676,1.40271639780637,3.79419222745544,1.18088118383682,1.255989822731,0.493588655687202,0.296452627087149,1.16791574001266,0,0.449724224769707,0.405720242777006,0.72353147925725,0.50925170356284,0.863088412352432,0.324270453550071,0.274561413188081,4.31304619582064,0.372140947668503,0.936113019343682,0.505157755894224,0.717589654087649,0.482443521363367,0.369506380333209,1.51593129416388,1.95557971730431,2.8856664581782,1.40814148973101,2.1775813467436,2.85652369063216,3.31727201358258,2.99506773801763,2.87904096543407,3.18909537314974,1.3109065177259,3.10832967358612,1.44649058581512,0,0.54390568381871,0.491764273019036,2.48343071674259,0.642202359951168,1.40654023910644,0.819674726883377,1.26235463602186,1.26203287766503,2.73307121007647,2.36965737506079,3.10659437338318,3.11918143715352,3.39691836946599,2.42886421004937,4.09158201075837,2.37172666767914,7.06906896127976,1.27746076687442,4.27357448801413,2.11753047159649,3.13443233647817,0,4.61283208694465,1.81394134178851,1.88605079755898,4.13422650033082,3.07435147943927,2.06742634534577,2.18120237686503,2.49548164869305,0.632073515871632,1.05418608574999,0,3.06395645178409,1.8006109403131,2.8458910432206,2.7863814554107,1.95074257006501,2.67553226403106,2.30368628842969,2.74018454203139,1.64270195644597,1.48282449604674,0.220528398054962,2.96795255294664,1.45317984026315,2.17126529741361,1.67121281604391,1.80554989719567,0.874442509889552,1.11255181206306,0.341741761595705,5.77883230297023,3.51869602002452,0.565105371014073,0.546776910884101,0.915112692826091,0.509935289981566,0.979660166265606,0.690999869022119,0.954670618015114,2.21435195506795,2.64315307264903,1.94409613479242,2.29997125615916,3.05707589244649,2.29269388854195,1.1571483801547,0.785267825952089,0.518459893167171,1.24267862617385,0,3.43888055901151,1.48912641411388,4.083474955225,3.35815541042101,1.85851738039856,4.3422178298929,2.3436789271911,1.78260885523708,0.724752362478018,0.288030006257865,2.21207784439725,1.82452693761148,1.64337531463724,0.389762468933385,1.43221356533985,0.198681354781265,0.721172697119813,1.03382669022204,1.21159739937777,1.143102099825,1.10908803650525,1.26695244961678,1.73181314952593,0.818138315270983,1.58711268530648,0.665957860122194,0.717710852875806,1.17519231454855,1.15913756419314,1.12609485270709,2.38097111547445,1.2862102744744,0.501572104035363,7.34177395402186,8.28585425712918,6.87474616127276,12.0297227640581,1.37016503954128,7.55393897389701,6.75022500231806,7.20513925158753,7.25027854374727,4.14208249401456,1.66059756134683,1.59609949360412,0.682934423016537,4.132814190161,1.88651846365184,1.83843508450014,1.55572709461131,4.53277125925567,2.24643446714271,0.758091635291392,1.2673964994512,2.82939512079114,3.37109426891577,3.77748399188729,4.02048282689293,2.38146845641537,3.36064545240081,2.50781986602817,1.64834360321323,3.82717192349433,3.42869252385415,3.54951612318675,2.86123427936785,2.47088908274958,3.85848459702856,2.11536519729191,2.37806364734604,2.10455769150274,3.39510284614654,3.36685362994643,2.37270036248348,2.1670986122624,1.22769312950907,3.25367366490529,2.89359916471712,2.49810577937946,1.87145286756327,1.71896843238639,2.10417165275728,1.98532277207564,2.08681052058379 | ||
|short_description=p2@Ahdc1 | |short_description=p2@Ahdc1 | ||
}} | }} |
Latest revision as of 11:11, 26 September 2015
Short description: | p2@Ahdc1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Ahdc1_5end |
Coexpression cluster: | NA |
Association with transcript: | -15bp_to_ENSMUST00000156677_5end |
EntrezGene: | Ahdc1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.12e-08 | 33 |
neuronal stem cell | 6.12e-08 | 33 |
neuroblast | 6.12e-08 | 33 |
electrically signaling cell | 6.12e-08 | 33 |
neural cell | 1.49e-07 | 43 |
ectodermal cell | 5.17e-07 | 44 |
neurectodermal cell | 5.17e-07 | 44 |
CNS neuron (sensu Vertebrata) | 8.60e-07 | 23 |
neuroblast (sensu Vertebrata) | 8.60e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 6.20e-17 | 73 |
ectoderm-derived structure | 8.42e-16 | 95 |
ectoderm | 8.42e-16 | 95 |
presumptive ectoderm | 8.42e-16 | 95 |
nervous system | 1.48e-15 | 75 |
neurectoderm | 8.19e-15 | 64 |
neural plate | 8.19e-15 | 64 |
presumptive neural plate | 8.19e-15 | 64 |
regional part of nervous system | 4.45e-14 | 54 |
gray matter | 4.45e-14 | 34 |
structure with developmental contribution from neural crest | 4.83e-14 | 92 |
neural tube | 6.66e-14 | 52 |
neural rod | 6.66e-14 | 52 |
future spinal cord | 6.66e-14 | 52 |
neural keel | 6.66e-14 | 52 |
pre-chordal neural plate | 2.05e-13 | 49 |
ecto-epithelium | 2.35e-13 | 73 |
brain | 2.67e-13 | 47 |
future brain | 2.67e-13 | 47 |
regional part of forebrain | 8.58e-13 | 39 |
forebrain | 8.58e-13 | 39 |
future forebrain | 8.58e-13 | 39 |
regional part of brain | 1.08e-12 | 46 |
anterior neural tube | 1.11e-12 | 40 |
brain grey matter | 1.66e-12 | 29 |
regional part of telencephalon | 1.66e-12 | 29 |
telencephalon | 1.66e-12 | 29 |
cerebral cortex | 2.69e-12 | 21 |
cerebral hemisphere | 2.69e-12 | 21 |
pallium | 2.69e-12 | 21 |
regional part of cerebral cortex | 1.29e-09 | 17 |