FFCP PHASE1:Mm9::chr10:80522879..80522949,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:80522879..80522949,-
|short_description=p1@Sgta
|description=CAGE_peak_1_at_Sgta_5end
|association_with_transcript=0bp_to_ENSMUST00000005067,NM_024499,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=52551 | |EntrezGene=52551 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BJU0,Q3TN35 | |UniProt=Q8BJU0,Q3TN35 | ||
|association_with_transcript=0bp_to_ENSMUST00000005067,NM_024499,uc007gft.1,uc007gfu.1_5end | |||
|cluster_id=chr10:80522879..80522949,- | |||
|description=CAGE_peak_1_at_Sgta_5end | |||
|id=chr10:80522879..80522949,- | |||
|ontology_enrichment_celltype=CL:0000055!2.75e-18!50;CL:0002319!1.27e-16!43;CL:0000221!9.60e-16!44;CL:0000133!9.60e-16!44;CL:0000117!4.05e-14!23;CL:0000337!4.05e-14!23;CL:0000393!1.27e-13!39;CL:0000211!1.27e-13!39;CL:0002321!4.14e-12!70;CL:0000220!4.14e-12!70;CL:0000540!6.71e-12!33;CL:0000047!6.71e-12!33;CL:0000031!6.71e-12!33;CL:0000404!6.71e-12!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.27e-16,43;CL:0000221,9.60e-16,44;CL:0000133,9.60e-16,44;CL:0000117,4.05e-14,23;CL:0000337,4.05e-14,23;CL:0000393,1.27e-13,39;CL:0000211,1.27e-13,39;CL:0002321,4.14e-12,70;CL:0000540,6.71e-12,33;CL:0000047,6.71e-12,33;CL:0000031,6.71e-12,33;CL:0000404,6.71e-12,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
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|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.72e-28,75;UBERON:0001017,1.27e-27,73;UBERON:0000073,1.19e-23,54;UBERON:0004121,1.42e-22,95;UBERON:0000924,1.42e-22,95;UBERON:0006601,1.42e-22,95;UBERON:0001049,1.71e-22,52;UBERON:0005068,1.71e-22,52;UBERON:0006241,1.71e-22,52;UBERON:0007135,1.71e-22,52;UBERON:0000955,1.48e-19,47;UBERON:0006238,1.48e-19,47;UBERON:0002346,1.53e-19,64;UBERON:0003075,1.53e-19,64;UBERON:0007284,1.53e-19,64;UBERON:0002616,3.08e-19,46;UBERON:0010314,2.08e-18,92;UBERON:0002020,1.62e-17,34;UBERON:0003080,1.82e-16,40;UBERON:0002780,5.57e-16,39;UBERON:0001890,5.57e-16,39;UBERON:0006240,5.57e-16,39;UBERON:0010371,1.33e-15,73;UBERON:0003528,7.55e-15,29;UBERON:0002791,7.55e-15,29;UBERON:0001893,7.55e-15,29;UBERON:0003056,2.74e-14,49;UBERON:0000025,1.29e-10,114;UBERON:0000956,1.30e-10,21;UBERON:0001869,1.30e-10,21;UBERON:0000203,1.30e-10,21;UBERON:0004111,7.36e-09,122;UBERON:0002619,1.33e-08,17 | |||
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| ||
|short_description=p1@Sgta | |||
}} | }} |
Latest revision as of 10:35, 26 September 2015
Short description: | p1@Sgta |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Sgta_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_ENSMUST00000005067, NM_024499, uc007gft.1, uc007gfu.1_5end |
EntrezGene: | Sgta |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.27e-16 | 43 |
ectodermal cell | 9.60e-16 | 44 |
neurectodermal cell | 9.60e-16 | 44 |
CNS neuron (sensu Vertebrata) | 4.05e-14 | 23 |
neuroblast (sensu Vertebrata) | 4.05e-14 | 23 |
electrically responsive cell | 1.27e-13 | 39 |
electrically active cell | 1.27e-13 | 39 |
embryonic cell | 4.14e-12 | 70 |
neuron | 6.71e-12 | 33 |
neuronal stem cell | 6.71e-12 | 33 |
neuroblast | 6.71e-12 | 33 |
electrically signaling cell | 6.71e-12 | 33 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.72e-28 | 75 |
central nervous system | 1.27e-27 | 73 |
regional part of nervous system | 1.19e-23 | 54 |
ectoderm-derived structure | 1.42e-22 | 95 |
ectoderm | 1.42e-22 | 95 |
presumptive ectoderm | 1.42e-22 | 95 |
neural tube | 1.71e-22 | 52 |
neural rod | 1.71e-22 | 52 |
future spinal cord | 1.71e-22 | 52 |
neural keel | 1.71e-22 | 52 |
brain | 1.48e-19 | 47 |
future brain | 1.48e-19 | 47 |
neurectoderm | 1.53e-19 | 64 |
neural plate | 1.53e-19 | 64 |
presumptive neural plate | 1.53e-19 | 64 |
regional part of brain | 3.08e-19 | 46 |
structure with developmental contribution from neural crest | 2.08e-18 | 92 |
gray matter | 1.62e-17 | 34 |
anterior neural tube | 1.82e-16 | 40 |
regional part of forebrain | 5.57e-16 | 39 |
forebrain | 5.57e-16 | 39 |
future forebrain | 5.57e-16 | 39 |
ecto-epithelium | 1.33e-15 | 73 |
brain grey matter | 7.55e-15 | 29 |
regional part of telencephalon | 7.55e-15 | 29 |
telencephalon | 7.55e-15 | 29 |
pre-chordal neural plate | 2.74e-14 | 49 |
tube | 1.29e-10 | 114 |
cerebral cortex | 1.30e-10 | 21 |
cerebral hemisphere | 1.30e-10 | 21 |
pallium | 1.30e-10 | 21 |
anatomical conduit | 7.36e-09 | 122 |
regional part of cerebral cortex | 1.33e-08 | 17 |