FFCP PHASE1:Mm9::chr17:35272640..35272726,+: Difference between revisions
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{{FFCP|EntrezGene=224727|HGNC=|MCL_coexpression_id=335|UniProt=G3UZT6,Q3TDL4|association_with_transcript=0bp_to_ENSMUST00000172840,ENSMUST00000173550,ENSMUST00000174478,NM_001252469,uc008cge.1_5end|description=CAGE_peak_3_at_Bag6_5end|id=chr17:35272640..35272726,+|ontology_enrichment_celltype=CL:0002319!1.56e-17!43;CL:0000221!2.54e-17!44;CL:0000133!2.54e-17!44;CL:0000055!1.50e-15!50;CL:0000540!1.40e-14!33;CL:0000047!1.40e-14!33;CL:0000031!1.40e-14!33;CL:0000404!1.40e-14!33;CL:0000393!5.44e-13!39;CL:0000211!5.44e-13!39;CL:0000117!1.06e-11!23;CL:0000337!1.06e-11!23;CL:0002321!1.24e-07!70;CL:0000220!1.24e-07!70|ontology_enrichment_celltype_v019_2=CL:0002319,1.54e-17,43;CL:0000221,2.52e-17,44;CL:0000133,2.52e-17,44;CL:0000540,1.39e-14,33;CL:0000047,1.39e-14,33;CL:0000031,1.39e-14,33;CL:0000404,1.39e-14,33;CL:0000393,5.41e-13,39;CL:0000211,5.41e-13,39;CL:0000117,1.05e-11,23;CL:0000337,1.05e-11,23;CL:0002321,1.23e-07,70|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!8.61e-29!73;UBERON:0005743!8.61e-29!73;UBERON:0000073!1.56e-28!75;UBERON:0001016!1.56e-28!75;UBERON:0004121!1.82e-23!102;UBERON:0000924!1.82e-23!102;UBERON:0006601!1.82e-23!102;UBERON:0002346!5.71e-23!71;UBERON:0003075!5.71e-23!71;UBERON:0007284!5.71e-23!71;UBERON:0001049!3.76e-20!52;UBERON:0005068!3.76e-20!52;UBERON:0006241!3.76e-20!52;UBERON:0007135!3.76e-20!52;UBERON:0000955!8.18e-19!50;UBERON:0006238!8.18e-19!50;UBERON:0002616!1.85e-18!49;UBERON:0003056!5.15e-18!49;UBERON:0000033!1.78e-17!63;UBERON:0003080!1.93e-17!40;UBERON:0002780!3.50e-17!39;UBERON:0001890!3.50e-17!39;UBERON:0006240!3.50e-17!39;UBERON:0002020!9.17e-16!34;UBERON:0002791!2.44e-13!29;UBERON:0003528!2.44e-13!29;UBERON:0001893!2.44e-13!29;UBERON:0000956!2.41e-10!21;UBERON:0001869!2.41e-10!21;UBERON:0000203!2.41e-10!21;UBERON:0000153!6.68e-09!94;UBERON:0002619!5.21e-08!17;UBERON:0007811!8.80e-08!86;UBERON:0000025!6.65e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.50e-29,73;UBERON:0001016,1.54e-28,75;UBERON:0004121,5.64e-22,95;UBERON:0000924,5.64e-22,95;UBERON:0006601,5.64e-22,95;UBERON:0002346,7.61e-22,64;UBERON:0003075,7.61e-22,64;UBERON:0007284,7.61e-22,64;UBERON:0000073,4.72e-21,54;UBERON:0001049,3.73e-20,52;UBERON:0005068,3.73e-20,52;UBERON:0006241,3.73e-20,52;UBERON:0007135,3.73e-20,52;UBERON:0000955,3.97e-18,47;UBERON:0006238,3.97e-18,47;UBERON:0003056,5.11e-18,49;UBERON:0010314,5.16e-18,92;UBERON:0002616,8.89e-18,46;UBERON:0003080,1.92e-17,40;UBERON:0002780,3.48e-17,39;UBERON:0001890,3.48e-17,39;UBERON:0006240,3.48e-17,39;UBERON:0010371,6.34e-17,73;UBERON:0002020,9.11e-16,34;UBERON:0003528,2.43e-13,29;UBERON:0002791,2.43e-13,29;UBERON:0001893,2.43e-13,29;UBERON:0000956,2.40e-10,21;UBERON:0001869,2.40e-10,21;UBERON:0000203,2.40e-10,21;UBERON:0002619,5.19e-08,17;UBERON:0000025,6.64e-07,114|phase1_expression=7.36684696682052,1.74487703819681,2.72999543633722,2.11724947914781,2.50447864973174,1.51091344720701,3.03696432774183,1.67860320474049,2.53419699873,1.40438715793196,1.54096171402954,0.638177271962691,1.19840510951844,0.524522414513984,0.333109761815663,1.82227740650843,2.79824751251259,0.630924330716475,0.411343300817216,0.42438965179803,11.9911039113008,4.76596565764249,4.70159620450084,2.23989391910769,0.68822784320151,1.72269589234506,1.7230479846363,2.37018355954478,2.09025761402011,2.26827116783938,2.88249663851896,14.6057054895715,15.9916844771988,0,0.577703239502549,1.16364251750945,1.22501613757421,0,0,0,0.588231488031014,0.683045484958446,0.485510353031154,5.16176953699867,5.5757312170733,5.50640256485045,29.7308710852255,13.2995345392072,13.6205433295373,10.1103547518627,9.09911740564856,10.062679505548,1.34226084846189,0.725362142011344,2.68875039313971,8.2323019531503,6.5902691185914,3.09403255366465,32.7752666592548,28.5655128806898,23.4517619297286,12.5372476865579,11.5608323494448,3.5995988691256,4.94433181283487,3.5524005747305,15.2796056364386,19.9793518767208,29.96629795715,32.9414489529325,33.4416688548697,14.568200204594,12.589506834242,27.9279022210095,40.4467887696957,34.0110951045708,6.60695285996332,12.6410464704336,12.4421291937557,38.115137154026,41.3524149082892,36.98484930953,11.1673199600552,6.75315132038016,6.87592114995646,15.0260578591571,12.9558229527184,26.0959224155421,4.54357159999104,8.23730005163962,1.73918693221007,3.44169550792555,2.03991400112325,3.77792234146472,5.19821133958135,3.13618820968135,4.63466586434781,5.79463096765396,2.85764605063156,6.00677276667578,6.05626705039726,3.84979432242953,5.09610479413291,14.2213340630666,3.030874574157,4.05375784760158,5.05524445014783,3.4255163915718,1.29468941823586,7.42210695324124,17.1750473498474,9.74289530598852,7.14908041493781,8.89263579260473,6.82014501387088,7.1629957057915,2.47194967734374,4.04878199375753,0.884610551949874,3.07357014900077,2.65009822152472,1.93950101254089,1.86391761218122,3.51336956413857,6.28340120440365,1.02182822083437,1.07833612055328,1.19980546198682,1.27070227073065,10.3355541189328,1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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=224727 | |||
|HGNC= | |||
|MCL_coexpression_id=335 | |||
|TSSclassifier=NA | |||
|UniProt=G3UZT6,Q3TDL4 | |||
|association_with_transcript=0bp_to_ENSMUST00000172840,ENSMUST00000173550,ENSMUST00000174478,NM_001252469,uc008cge.1_5end | |||
|cluster_id=chr17:35272640..35272726,+ | |||
|description=CAGE_peak_3_at_Bag6_5end | |||
|id=chr17:35272640..35272726,+ | |||
|ontology_enrichment_celltype=CL:0002319!1.56e-17!43;CL:0000221!2.54e-17!44;CL:0000133!2.54e-17!44;CL:0000055!1.50e-15!50;CL:0000540!1.40e-14!33;CL:0000047!1.40e-14!33;CL:0000031!1.40e-14!33;CL:0000404!1.40e-14!33;CL:0000393!5.44e-13!39;CL:0000211!5.44e-13!39;CL:0000117!1.06e-11!23;CL:0000337!1.06e-11!23;CL:0002321!1.24e-07!70;CL:0000220!1.24e-07!70 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,1.54e-17,43;CL:0000221,2.52e-17,44;CL:0000133,2.52e-17,44;CL:0000540,1.39e-14,33;CL:0000047,1.39e-14,33;CL:0000031,1.39e-14,33;CL:0000404,1.39e-14,33;CL:0000393,5.41e-13,39;CL:0000211,5.41e-13,39;CL:0000117,1.05e-11,23;CL:0000337,1.05e-11,23;CL:0002321,1.23e-07,70 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.61e-29!73;UBERON:0005743!8.61e-29!73;UBERON:0000073!1.56e-28!75;UBERON:0001016!1.56e-28!75;UBERON:0004121!1.82e-23!102;UBERON:0000924!1.82e-23!102;UBERON:0006601!1.82e-23!102;UBERON:0002346!5.71e-23!71;UBERON:0003075!5.71e-23!71;UBERON:0007284!5.71e-23!71;UBERON:0001049!3.76e-20!52;UBERON:0005068!3.76e-20!52;UBERON:0006241!3.76e-20!52;UBERON:0007135!3.76e-20!52;UBERON:0000955!8.18e-19!50;UBERON:0006238!8.18e-19!50;UBERON:0002616!1.85e-18!49;UBERON:0003056!5.15e-18!49;UBERON:0000033!1.78e-17!63;UBERON:0003080!1.93e-17!40;UBERON:0002780!3.50e-17!39;UBERON:0001890!3.50e-17!39;UBERON:0006240!3.50e-17!39;UBERON:0002020!9.17e-16!34;UBERON:0002791!2.44e-13!29;UBERON:0003528!2.44e-13!29;UBERON:0001893!2.44e-13!29;UBERON:0000956!2.41e-10!21;UBERON:0001869!2.41e-10!21;UBERON:0000203!2.41e-10!21;UBERON:0000153!6.68e-09!94;UBERON:0002619!5.21e-08!17;UBERON:0007811!8.80e-08!86;UBERON:0000025!6.65e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.50e-29,73;UBERON:0001016,1.54e-28,75;UBERON:0004121,5.64e-22,95;UBERON:0000924,5.64e-22,95;UBERON:0006601,5.64e-22,95;UBERON:0002346,7.61e-22,64;UBERON:0003075,7.61e-22,64;UBERON:0007284,7.61e-22,64;UBERON:0000073,4.72e-21,54;UBERON:0001049,3.73e-20,52;UBERON:0005068,3.73e-20,52;UBERON:0006241,3.73e-20,52;UBERON:0007135,3.73e-20,52;UBERON:0000955,3.97e-18,47;UBERON:0006238,3.97e-18,47;UBERON:0003056,5.11e-18,49;UBERON:0010314,5.16e-18,92;UBERON:0002616,8.89e-18,46;UBERON:0003080,1.92e-17,40;UBERON:0002780,3.48e-17,39;UBERON:0001890,3.48e-17,39;UBERON:0006240,3.48e-17,39;UBERON:0010371,6.34e-17,73;UBERON:0002020,9.11e-16,34;UBERON:0003528,2.43e-13,29;UBERON:0002791,2.43e-13,29;UBERON:0001893,2.43e-13,29;UBERON:0000956,2.40e-10,21;UBERON:0001869,2.40e-10,21;UBERON:0000203,2.40e-10,21;UBERON:0002619,5.19e-08,17;UBERON:0000025,6.64e-07,114 | |||
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| |||
|short_description=p3@Bag6 | |||
}} |
Latest revision as of 09:34, 26 September 2015
Short description: | p3@Bag6 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Bag6_5end |
Coexpression cluster: | MCL_coexpression_mm9:335 |
Association with transcript: | 0bp_to_ENSMUST00000172840, ENSMUST00000173550, ENSMUST00000174478, NM_001252469, uc008cge.1_5end |
EntrezGene: | Bag6 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 1.54e-17 | 43 |
ectodermal cell | 2.52e-17 | 44 |
neurectodermal cell | 2.52e-17 | 44 |
neuron | 1.39e-14 | 33 |
neuronal stem cell | 1.39e-14 | 33 |
neuroblast | 1.39e-14 | 33 |
electrically signaling cell | 1.39e-14 | 33 |
electrically responsive cell | 5.41e-13 | 39 |
electrically active cell | 5.41e-13 | 39 |
CNS neuron (sensu Vertebrata) | 1.05e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.05e-11 | 23 |
embryonic cell | 1.23e-07 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.50e-29 | 73 |
nervous system | 1.54e-28 | 75 |
ectoderm-derived structure | 5.64e-22 | 95 |
ectoderm | 5.64e-22 | 95 |
presumptive ectoderm | 5.64e-22 | 95 |
neurectoderm | 7.61e-22 | 64 |
neural plate | 7.61e-22 | 64 |
presumptive neural plate | 7.61e-22 | 64 |
regional part of nervous system | 4.72e-21 | 54 |
neural tube | 3.73e-20 | 52 |
neural rod | 3.73e-20 | 52 |
future spinal cord | 3.73e-20 | 52 |
neural keel | 3.73e-20 | 52 |
brain | 3.97e-18 | 47 |
future brain | 3.97e-18 | 47 |
pre-chordal neural plate | 5.11e-18 | 49 |
structure with developmental contribution from neural crest | 5.16e-18 | 92 |
regional part of brain | 8.89e-18 | 46 |
anterior neural tube | 1.92e-17 | 40 |
regional part of forebrain | 3.48e-17 | 39 |
forebrain | 3.48e-17 | 39 |
future forebrain | 3.48e-17 | 39 |
ecto-epithelium | 6.34e-17 | 73 |
gray matter | 9.11e-16 | 34 |
brain grey matter | 2.43e-13 | 29 |
regional part of telencephalon | 2.43e-13 | 29 |
telencephalon | 2.43e-13 | 29 |
cerebral cortex | 2.40e-10 | 21 |
cerebral hemisphere | 2.40e-10 | 21 |
pallium | 2.40e-10 | 21 |
regional part of cerebral cortex | 5.19e-08 | 17 |
tube | 6.64e-07 | 114 |