FFCP PHASE1:Mm9::chr7:25267010..25267095,+: Difference between revisions
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{{FFCP|EntrezGene=260299|HGNC=|MCL_coexpression_id=747|UniProt=Q8R464|association_with_transcript=0bp_to_ENSMUST00000068023,NM_153112,uc009fps.1_5end|description=CAGE_peak_1_at_Cadm4_5end|id=chr7:25267010..25267095,+|ontology_enrichment_celltype=CL:0000221!1.67e-25!44;CL:0000133!1.67e-25!44;CL:0002319!8.58e-25!43;CL:0000055!9.44e-21!50;CL:0000540!1.22e-18!33;CL:0000047!1.22e-18!33;CL:0000031!1.22e-18!33;CL:0000404!1.22e-18!33;CL:0000393!2.22e-15!39;CL:0000211!2.22e-15!39;CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0002321!2.26e-10!70;CL:0000220!2.26e-10!70;CL:0000333!5.96e-07!10;CL:0000095!5.96e-07!10;CL:0000243!5.96e-07!10;CL:0000123!5.96e-07!10;CL:0000125!5.96e-07!10;CL:0000030!5.96e-07!10;CL:0000339!5.96e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,4.23e-26,44;CL:0000133,4.23e-26,44;CL:0002319,2.26e-25,43;CL:0000540,4.58e-19,33;CL:0000047,4.58e-19,33;CL:0000031,4.58e-19,33;CL:0000404,4.58e-19,33;CL:0000117,1.19e-15,23;CL:0000337,1.19e-15,23;CL:0000393,3.73e-15,39;CL:0000211,3.73e-15,39;CL:0002321,3.07e-11,70;CL:0000333,4.36e-07,10;CL:0000095,4.36e-07,10;CL:0000243,4.36e-07,10;CL:0000123,4.36e-07,10;CL:0000125,4.36e-07,10;CL:0000030,4.36e-07,10;CL:0000339,4.36e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!4.69e-39!75;UBERON:0001016!4.69e-39!75;UBERON:0001017!1.43e-37!73;UBERON:0005743!1.43e-37!73;UBERON:0004121!2.52e-36!102;UBERON:0000924!2.52e-36!102;UBERON:0006601!2.52e-36!102;UBERON:0000033!5.90e-26!63;UBERON:0001049!2.29e-25!52;UBERON:0005068!2.29e-25!52;UBERON:0006241!2.29e-25!52;UBERON:0007135!2.29e-25!52;UBERON:0002346!5.55e-25!71;UBERON:0003075!5.55e-25!71;UBERON:0007284!5.55e-25!71;UBERON:0000955!1.10e-23!50;UBERON:0006238!1.10e-23!50;UBERON:0002616!3.09e-23!49;UBERON:0002020!2.11e-19!34;UBERON:0003056!3.99e-19!49;UBERON:0003080!3.36e-18!40;UBERON:0002780!9.09e-18!39;UBERON:0001890!9.09e-18!39;UBERON:0006240!9.09e-18!39;UBERON:0002791!6.91e-16!29;UBERON:0003528!6.91e-16!29;UBERON:0001893!6.91e-16!29;UBERON:0000956!2.26e-11!21;UBERON:0001869!2.26e-11!21;UBERON:0000203!2.26e-11!21;UBERON:0007811!2.49e-10!86;UBERON:0002619!2.78e-09!17;UBERON:0000153!3.61e-09!94;UBERON:0000468!4.06e-09!333;UBERON:0003076!9.41e-08!12;UBERON:0003057!9.41e-08!12;UBERON:0000922!9.23e-07!328|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.39e-40,75;UBERON:0004121,3.84e-39,95;UBERON:0000924,3.84e-39,95;UBERON:0006601,3.84e-39,95;UBERON:0001017,1.79e-38,73;UBERON:0002346,4.14e-28,64;UBERON:0003075,4.14e-28,64;UBERON:0007284,4.14e-28,64;UBERON:0000073,1.31e-27,54;UBERON:0010371,1.89e-26,73;UBERON:0001049,5.82e-26,52;UBERON:0005068,5.82e-26,52;UBERON:0006241,5.82e-26,52;UBERON:0007135,5.82e-26,52;UBERON:0000955,3.90e-22,47;UBERON:0006238,3.90e-22,47;UBERON:0002616,1.10e-21,46;UBERON:0010314,1.67e-21,92;UBERON:0002020,7.59e-20,34;UBERON:0003056,1.46e-19,49;UBERON:0003080,1.29e-18,40;UBERON:0002780,3.59e-18,39;UBERON:0001890,3.59e-18,39;UBERON:0006240,3.59e-18,39;UBERON:0003528,3.04e-16,29;UBERON:0002791,3.04e-16,29;UBERON:0001893,3.04e-16,29;UBERON:0000956,1.29e-11,21;UBERON:0001869,1.29e-11,21;UBERON:0000203,1.29e-11,21;UBERON:0002619,1.78e-09,17;UBERON:0003076,6.59e-08,12;UBERON:0003057,6.59e-08,12|phase1_expression=34.1117044333211,0,0,0,0,0.671517087647559,0,0.258246646883153,0,0,0,0.0797721589953364,0.171200729931206,0.174840804837995,0.666219523631325,0.202475267389826,0,0.157731082679119,0.137114433605739,0,12.246233781754,0.794327609607082,0.261199789138935,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0.881277725829041,1.01376931219515,0.917733760808408,27.3836970521814,160.248489939628,54.7018595008835,53.0793624472794,47.1754240877472,113.564525848328,1.00669563634642,0,0,1.54355661621568,3.72493471920384,12.8918023069361,103.181395038395,67.1818543675482,107.117507192544,7.45457970552091,7.11435836888911,0,1.97773272513395,0.7104801149461,167.17686166927,322.743376470106,71.7532117174665,82.8936461356581,86.443559115418,203.669151879912,168.743565287033,70.0647371509537,86.7401512715039,70.7798465689716,80.3845931295537,117.089289024117,96.9257224846896,81.3738395295296,102.832111409108,84.3879660301951,95.7597686574737,72.033614084055,74.7183431628601,116.378291262099,126.426052549603,90.2173317794455,86.0249556264971,74.4379867051837,1.15945795480671,1.72084775396277,4.75979933595425,3.77792234146472,0,1.34408066129201,2.66844398250329,0,0,0,97.7453333250163,0,0,0,15.8038459938186,17.7351905832569,21.7375511356357,3.31133251185274,0,1.48442139064825,6.24547176358089,3.34912026143355,2.30615497256059,4.97384713823654,3.17489509266403,1.25666591329675,3.46072954828123,1.3013942122792,0,2.10296904931632,0.883366073841574,0.484875253135222,1.86391761218122,25.1791485429931,50.6861030488561,0.255457055208591,0.11981512450592,0,0.127070227073065,38.4961943270394,36.1425476226715,67.8533501409468,37.719877481724,54.7231078686907,50.2847067834135,44.2918648174978,4.48093200941392,1.11966273549084,0.7581682753010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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=260299 | |||
|HGNC= | |||
|MCL_coexpression_id=747 | |||
|TSSclassifier=NA | |||
|UniProt=Q8R464 | |||
|association_with_transcript=0bp_to_ENSMUST00000068023,NM_153112,uc009fps.1_5end | |||
|cluster_id=chr7:25267010..25267095,+ | |||
|description=CAGE_peak_1_at_Cadm4_5end | |||
|id=chr7:25267010..25267095,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.67e-25!44;CL:0000133!1.67e-25!44;CL:0002319!8.58e-25!43;CL:0000055!9.44e-21!50;CL:0000540!1.22e-18!33;CL:0000047!1.22e-18!33;CL:0000031!1.22e-18!33;CL:0000404!1.22e-18!33;CL:0000393!2.22e-15!39;CL:0000211!2.22e-15!39;CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0002321!2.26e-10!70;CL:0000220!2.26e-10!70;CL:0000333!5.96e-07!10;CL:0000095!5.96e-07!10;CL:0000243!5.96e-07!10;CL:0000123!5.96e-07!10;CL:0000125!5.96e-07!10;CL:0000030!5.96e-07!10;CL:0000339!5.96e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.23e-26,44;CL:0000133,4.23e-26,44;CL:0002319,2.26e-25,43;CL:0000540,4.58e-19,33;CL:0000047,4.58e-19,33;CL:0000031,4.58e-19,33;CL:0000404,4.58e-19,33;CL:0000117,1.19e-15,23;CL:0000337,1.19e-15,23;CL:0000393,3.73e-15,39;CL:0000211,3.73e-15,39;CL:0002321,3.07e-11,70;CL:0000333,4.36e-07,10;CL:0000095,4.36e-07,10;CL:0000243,4.36e-07,10;CL:0000123,4.36e-07,10;CL:0000125,4.36e-07,10;CL:0000030,4.36e-07,10;CL:0000339,4.36e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.69e-39!75;UBERON:0001016!4.69e-39!75;UBERON:0001017!1.43e-37!73;UBERON:0005743!1.43e-37!73;UBERON:0004121!2.52e-36!102;UBERON:0000924!2.52e-36!102;UBERON:0006601!2.52e-36!102;UBERON:0000033!5.90e-26!63;UBERON:0001049!2.29e-25!52;UBERON:0005068!2.29e-25!52;UBERON:0006241!2.29e-25!52;UBERON:0007135!2.29e-25!52;UBERON:0002346!5.55e-25!71;UBERON:0003075!5.55e-25!71;UBERON:0007284!5.55e-25!71;UBERON:0000955!1.10e-23!50;UBERON:0006238!1.10e-23!50;UBERON:0002616!3.09e-23!49;UBERON:0002020!2.11e-19!34;UBERON:0003056!3.99e-19!49;UBERON:0003080!3.36e-18!40;UBERON:0002780!9.09e-18!39;UBERON:0001890!9.09e-18!39;UBERON:0006240!9.09e-18!39;UBERON:0002791!6.91e-16!29;UBERON:0003528!6.91e-16!29;UBERON:0001893!6.91e-16!29;UBERON:0000956!2.26e-11!21;UBERON:0001869!2.26e-11!21;UBERON:0000203!2.26e-11!21;UBERON:0007811!2.49e-10!86;UBERON:0002619!2.78e-09!17;UBERON:0000153!3.61e-09!94;UBERON:0000468!4.06e-09!333;UBERON:0003076!9.41e-08!12;UBERON:0003057!9.41e-08!12;UBERON:0000922!9.23e-07!328 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.39e-40,75;UBERON:0004121,3.84e-39,95;UBERON:0000924,3.84e-39,95;UBERON:0006601,3.84e-39,95;UBERON:0001017,1.79e-38,73;UBERON:0002346,4.14e-28,64;UBERON:0003075,4.14e-28,64;UBERON:0007284,4.14e-28,64;UBERON:0000073,1.31e-27,54;UBERON:0010371,1.89e-26,73;UBERON:0001049,5.82e-26,52;UBERON:0005068,5.82e-26,52;UBERON:0006241,5.82e-26,52;UBERON:0007135,5.82e-26,52;UBERON:0000955,3.90e-22,47;UBERON:0006238,3.90e-22,47;UBERON:0002616,1.10e-21,46;UBERON:0010314,1.67e-21,92;UBERON:0002020,7.59e-20,34;UBERON:0003056,1.46e-19,49;UBERON:0003080,1.29e-18,40;UBERON:0002780,3.59e-18,39;UBERON:0001890,3.59e-18,39;UBERON:0006240,3.59e-18,39;UBERON:0003528,3.04e-16,29;UBERON:0002791,3.04e-16,29;UBERON:0001893,3.04e-16,29;UBERON:0000956,1.29e-11,21;UBERON:0001869,1.29e-11,21;UBERON:0000203,1.29e-11,21;UBERON:0002619,1.78e-09,17;UBERON:0003076,6.59e-08,12;UBERON:0003057,6.59e-08,12 | |||
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| |||
|short_description=p1@Cadm4 | |||
}} |
Latest revision as of 09:33, 26 September 2015
Short description: | p1@Cadm4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cadm4_5end |
Coexpression cluster: | MCL_coexpression_mm9:747 |
Association with transcript: | 0bp_to_ENSMUST00000068023, NM_153112, uc009fps.1_5end |
EntrezGene: | Cadm4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.23e-26 | 44 |
neurectodermal cell | 4.23e-26 | 44 |
neural cell | 2.26e-25 | 43 |
neuron | 4.58e-19 | 33 |
neuronal stem cell | 4.58e-19 | 33 |
neuroblast | 4.58e-19 | 33 |
electrically signaling cell | 4.58e-19 | 33 |
CNS neuron (sensu Vertebrata) | 1.19e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.19e-15 | 23 |
electrically responsive cell | 3.73e-15 | 39 |
electrically active cell | 3.73e-15 | 39 |
embryonic cell | 3.07e-11 | 70 |
migratory neural crest cell | 4.36e-07 | 10 |
neuron associated cell | 4.36e-07 | 10 |
glial cell (sensu Vertebrata) | 4.36e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 4.36e-07 | 10 |
glial cell | 4.36e-07 | 10 |
glioblast | 4.36e-07 | 10 |
glioblast (sensu Vertebrata) | 4.36e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.39e-40 | 75 |
ectoderm-derived structure | 3.84e-39 | 95 |
ectoderm | 3.84e-39 | 95 |
presumptive ectoderm | 3.84e-39 | 95 |
central nervous system | 1.79e-38 | 73 |
neurectoderm | 4.14e-28 | 64 |
neural plate | 4.14e-28 | 64 |
presumptive neural plate | 4.14e-28 | 64 |
regional part of nervous system | 1.31e-27 | 54 |
ecto-epithelium | 1.89e-26 | 73 |
neural tube | 5.82e-26 | 52 |
neural rod | 5.82e-26 | 52 |
future spinal cord | 5.82e-26 | 52 |
neural keel | 5.82e-26 | 52 |
brain | 3.90e-22 | 47 |
future brain | 3.90e-22 | 47 |
regional part of brain | 1.10e-21 | 46 |
structure with developmental contribution from neural crest | 1.67e-21 | 92 |
gray matter | 7.59e-20 | 34 |
pre-chordal neural plate | 1.46e-19 | 49 |
anterior neural tube | 1.29e-18 | 40 |
regional part of forebrain | 3.59e-18 | 39 |
forebrain | 3.59e-18 | 39 |
future forebrain | 3.59e-18 | 39 |
brain grey matter | 3.04e-16 | 29 |
regional part of telencephalon | 3.04e-16 | 29 |
telencephalon | 3.04e-16 | 29 |
cerebral cortex | 1.29e-11 | 21 |
cerebral hemisphere | 1.29e-11 | 21 |
pallium | 1.29e-11 | 21 |
regional part of cerebral cortex | 1.78e-09 | 17 |
posterior neural tube | 6.59e-08 | 12 |
chordal neural plate | 6.59e-08 | 12 |