FFCP PHASE1:Mm9::chr7:25267010..25267095,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=260299 | |EntrezGene=260299 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=747 | |||
|TSSclassifier=NA | |||
|UniProt=Q8R464 | |UniProt=Q8R464 | ||
|association_with_transcript=0bp_to_ENSMUST00000068023,NM_153112,uc009fps.1_5end | |association_with_transcript=0bp_to_ENSMUST00000068023,NM_153112,uc009fps.1_5end | ||
|cluster_id=chr7:25267010..25267095,+ | |||
|description=CAGE_peak_1_at_Cadm4_5end | |description=CAGE_peak_1_at_Cadm4_5end | ||
|id=chr7:25267010..25267095,+ | |id=chr7:25267010..25267095,+ | ||
|ontology_enrichment_celltype=CL:0000221!1.67e-25!44;CL:0000133!1.67e-25!44;CL:0002319!8.58e-25!43;CL:0000055!9.44e-21!50;CL:0000540!1.22e-18!33;CL:0000047!1.22e-18!33;CL:0000031!1.22e-18!33;CL:0000404!1.22e-18!33;CL:0000393!2.22e-15!39;CL:0000211!2.22e-15!39;CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0002321!2.26e-10!70;CL:0000220!2.26e-10!70;CL:0000333!5.96e-07!10;CL:0000095!5.96e-07!10;CL:0000243!5.96e-07!10;CL:0000123!5.96e-07!10;CL:0000125!5.96e-07!10;CL:0000030!5.96e-07!10;CL:0000339!5.96e-07!10 | |ontology_enrichment_celltype=CL:0000221!1.67e-25!44;CL:0000133!1.67e-25!44;CL:0002319!8.58e-25!43;CL:0000055!9.44e-21!50;CL:0000540!1.22e-18!33;CL:0000047!1.22e-18!33;CL:0000031!1.22e-18!33;CL:0000404!1.22e-18!33;CL:0000393!2.22e-15!39;CL:0000211!2.22e-15!39;CL:0000117!2.63e-15!23;CL:0000337!2.63e-15!23;CL:0002321!2.26e-10!70;CL:0000220!2.26e-10!70;CL:0000333!5.96e-07!10;CL:0000095!5.96e-07!10;CL:0000243!5.96e-07!10;CL:0000123!5.96e-07!10;CL:0000125!5.96e-07!10;CL:0000030!5.96e-07!10;CL:0000339!5.96e-07!10 | ||
|ontology_enrichment_celltype_v019_2=CL:0000221,4.23e-26,44;CL:0000133,4.23e-26,44;CL:0002319,2.26e-25,43;CL:0000540,4.58e-19,33;CL:0000047,4.58e-19,33;CL:0000031,4.58e-19,33;CL:0000404,4.58e-19,33;CL:0000117,1.19e-15,23;CL:0000337,1.19e-15,23;CL:0000393,3.73e-15,39;CL:0000211,3.73e-15,39;CL:0002321,3.07e-11,70;CL:0000333,4.36e-07,10;CL:0000095,4.36e-07,10;CL:0000243,4.36e-07,10;CL:0000123,4.36e-07,10;CL:0000125,4.36e-07,10;CL:0000030,4.36e-07,10;CL:0000339,4.36e-07,10 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!4.69e-39!75;UBERON:0001016!4.69e-39!75;UBERON:0001017!1.43e-37!73;UBERON:0005743!1.43e-37!73;UBERON:0004121!2.52e-36!102;UBERON:0000924!2.52e-36!102;UBERON:0006601!2.52e-36!102;UBERON:0000033!5.90e-26!63;UBERON:0001049!2.29e-25!52;UBERON:0005068!2.29e-25!52;UBERON:0006241!2.29e-25!52;UBERON:0007135!2.29e-25!52;UBERON:0002346!5.55e-25!71;UBERON:0003075!5.55e-25!71;UBERON:0007284!5.55e-25!71;UBERON:0000955!1.10e-23!50;UBERON:0006238!1.10e-23!50;UBERON:0002616!3.09e-23!49;UBERON:0002020!2.11e-19!34;UBERON:0003056!3.99e-19!49;UBERON:0003080!3.36e-18!40;UBERON:0002780!9.09e-18!39;UBERON:0001890!9.09e-18!39;UBERON:0006240!9.09e-18!39;UBERON:0002791!6.91e-16!29;UBERON:0003528!6.91e-16!29;UBERON:0001893!6.91e-16!29;UBERON:0000956!2.26e-11!21;UBERON:0001869!2.26e-11!21;UBERON:0000203!2.26e-11!21;UBERON:0007811!2.49e-10!86;UBERON:0002619!2.78e-09!17;UBERON:0000153!3.61e-09!94;UBERON:0000468!4.06e-09!333;UBERON:0003076!9.41e-08!12;UBERON:0003057!9.41e-08!12;UBERON:0000922!9.23e-07!328 | |ontology_enrichment_uberon=UBERON:0000073!4.69e-39!75;UBERON:0001016!4.69e-39!75;UBERON:0001017!1.43e-37!73;UBERON:0005743!1.43e-37!73;UBERON:0004121!2.52e-36!102;UBERON:0000924!2.52e-36!102;UBERON:0006601!2.52e-36!102;UBERON:0000033!5.90e-26!63;UBERON:0001049!2.29e-25!52;UBERON:0005068!2.29e-25!52;UBERON:0006241!2.29e-25!52;UBERON:0007135!2.29e-25!52;UBERON:0002346!5.55e-25!71;UBERON:0003075!5.55e-25!71;UBERON:0007284!5.55e-25!71;UBERON:0000955!1.10e-23!50;UBERON:0006238!1.10e-23!50;UBERON:0002616!3.09e-23!49;UBERON:0002020!2.11e-19!34;UBERON:0003056!3.99e-19!49;UBERON:0003080!3.36e-18!40;UBERON:0002780!9.09e-18!39;UBERON:0001890!9.09e-18!39;UBERON:0006240!9.09e-18!39;UBERON:0002791!6.91e-16!29;UBERON:0003528!6.91e-16!29;UBERON:0001893!6.91e-16!29;UBERON:0000956!2.26e-11!21;UBERON:0001869!2.26e-11!21;UBERON:0000203!2.26e-11!21;UBERON:0007811!2.49e-10!86;UBERON:0002619!2.78e-09!17;UBERON:0000153!3.61e-09!94;UBERON:0000468!4.06e-09!333;UBERON:0003076!9.41e-08!12;UBERON:0003057!9.41e-08!12;UBERON:0000922!9.23e-07!328 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,5.39e-40,75;UBERON:0004121,3.84e-39,95;UBERON:0000924,3.84e-39,95;UBERON:0006601,3.84e-39,95;UBERON:0001017,1.79e-38,73;UBERON:0002346,4.14e-28,64;UBERON:0003075,4.14e-28,64;UBERON:0007284,4.14e-28,64;UBERON:0000073,1.31e-27,54;UBERON:0010371,1.89e-26,73;UBERON:0001049,5.82e-26,52;UBERON:0005068,5.82e-26,52;UBERON:0006241,5.82e-26,52;UBERON:0007135,5.82e-26,52;UBERON:0000955,3.90e-22,47;UBERON:0006238,3.90e-22,47;UBERON:0002616,1.10e-21,46;UBERON:0010314,1.67e-21,92;UBERON:0002020,7.59e-20,34;UBERON:0003056,1.46e-19,49;UBERON:0003080,1.29e-18,40;UBERON:0002780,3.59e-18,39;UBERON:0001890,3.59e-18,39;UBERON:0006240,3.59e-18,39;UBERON:0003528,3.04e-16,29;UBERON:0002791,3.04e-16,29;UBERON:0001893,3.04e-16,29;UBERON:0000956,1.29e-11,21;UBERON:0001869,1.29e-11,21;UBERON:0000203,1.29e-11,21;UBERON:0002619,1.78e-09,17;UBERON:0003076,6.59e-08,12;UBERON:0003057,6.59e-08,12 | |||
|phase1_expression=34.1117044333211,0,0,0,0,0.671517087647559,0,0.258246646883153,0,0,0,0.0797721589953364,0.171200729931206,0.174840804837995,0.666219523631325,0.202475267389826,0,0.157731082679119,0.137114433605739,0,12.246233781754,0.794327609607082,0.261199789138935,0,0,0,0,0,0.190023419456374,0,0,0,0,0,0,0.332469290716985,0,0,0,0,0,0,0,0.881277725829041,1.01376931219515,0.917733760808408,27.3836970521814,160.248489939628,54.7018595008835,53.0793624472794,47.1754240877472,113.564525848328,1.00669563634642,0,0,1.54355661621568,3.72493471920384,12.8918023069361,103.181395038395,67.1818543675482,107.117507192544,7.45457970552091,7.11435836888911,0,1.97773272513395,0.7104801149461,167.17686166927,322.743376470106,71.7532117174665,82.8936461356581,86.443559115418,203.669151879912,168.743565287033,70.0647371509537,86.7401512715039,70.7798465689716,80.3845931295537,117.089289024117,96.9257224846896,81.3738395295296,102.832111409108,84.3879660301951,95.7597686574737,72.033614084055,74.7183431628601,116.378291262099,126.426052549603,90.2173317794455,86.0249556264971,74.4379867051837,1.15945795480671,1.72084775396277,4.75979933595425,3.77792234146472,0,1.34408066129201,2.66844398250329,0,0,0,97.7453333250163,0,0,0,15.8038459938186,17.7351905832569,21.7375511356357,3.31133251185274,0,1.48442139064825,6.24547176358089,3.34912026143355,2.30615497256059,4.97384713823654,3.17489509266403,1.25666591329675,3.46072954828123,1.3013942122792,0,2.10296904931632,0.883366073841574,0.484875253135222,1.86391761218122,25.1791485429931,50.6861030488561,0.255457055208591,0.11981512450592,0,0.127070227073065,38.4961943270394,36.1425476226715,67.8533501409468,37.719877481724,54.7231078686907,50.2847067834135,44.2918648174978,4.48093200941392,1.11966273549084,0.758168275301024,3.99839526184301,4.55421550369463,10.3455946995063,7.56260945182467,9.19299388797862,12.5187158438443,14.3487366719032,15.7418897260344,8.2785078636485,4.52692785158969,4.16033376369202,4.75068035242662,3.72632745126877,2.22437799380478,1.39300866608867,2.67516777330327,6.36909653819178,0,0,0,0.414251545071004,0.234526059981096,0.180062061461015,2.13070262026689,1.37734962223183,1.54267112887378,1.86027155800326,1.87791380979733,2.80236821681207,6.41783414662574,7.88003827579657,5.26947262048062,4.82459958503597,4.17145219052996,4.83143107537338,23.5524742391823,55.4655860724343,0.660837565967596,0,3.19932375802851,3.48355007790658,2.06187938115349,1.61346819698674,1.11189021922435,0.570676878337677,2.84717436926707,1.31759163779209,1.00534083520108,3.58121649674071,2.72949721966768,0,0.648414149624083,0.796565093017469,3.98302592001472,3.65595240351132,11.270773567308,5.09128319613286,4.84881217919064,5.61086559122549,7.46191138066236,13.1373031701846,8.79192875911699,10.1185674415876,2.37162101669719,0.500535317148282,0.393117990226406,0.674586337154561,0.202860121388503,0.72353147925725,0,0.287696137450811,0.162135226775035,0.549122826376163,1.43768206527355,0.744281895337007,0.312037673114561,0.505157755894224,0.538192240565737,1.92977408545347,1.66277871149944,4.16881105895066,2.28150967018836,2.03694102930226,1.40814148973101,0.837531287209079,0.952174563544055,3.31727201358258,0.945810864637146,0.8858587585951,1.91345722388985,3.27726629431476,1.89953480052485,2.74833211304872,0,0,3.44234991113325,6.34654516500885,40.9404004468869,54.2690108921901,0,1.26235463602186,15.7754109708128,10.5418460960092,27.5741949097983,27.720380562496,38.989767964419,45.2922449262132,21.4549671887694,26.0107713541068,20.1596766752727,36.630630072086,1.98716119291576,9.79360820169904,6.8412522928502,2.63952196756057,1.32745138339963,2.42780636154981,1.51161778482376,3.20628635585027,2.65771703592696,2.45948118355142,3.6179961043551,5.08947221268508,5.34746067577082,2.52829406348653,5.27093042874994,0,5.10659408630682,9.54323798365944,9.31382523235832,12.4315480318324,7.62563004661776,10.3453914209201,12.8348236069654,12.178597964584,0.704015124191131,6.56679419677843,0.661585194164886,2.14352128823924,0.807322133479528,1.56813604813205,3.10368094408155,5.25250879184196,0.874442509889552,44.8729230865433,2.22132145037209,7.22354037871279,4.25947412950337,1.50694765603753,3.00727300986255,4.80434163733698,0.339956859987711,0.139951452323658,0.690999869022119,3.81868247206045,6.80122386199441,5.08298667817122,4.75223499615926,3.3454127362315,2.83871332870031,2.02296519577231,3.14083131756277,6.02038666563268,4.79575401179634,7.45607175704311,0.56369293868419,10.0176085849466,11.0857188606255,11.2781689239548,13.0451421712508,12.3337971608268,13.2613679669702,11.5881902511116,4.8235298435827,1.44950472495604,0.864090018773596,0.632022241256357,2.43270258348197,1.33524244314275,0.77952493786677,0.179026695667481,0.198681354781265,1.20195449519969,0.886137163047463,0.605798699688886,0.838274873204998,0,0.487289403698762,0.192423683280659,0.584384510907845,6.80191150845634,6.21560669447381,1.79427713218951,5.87596157274275,4.25017106870819,1.31377732815827,3.29672923681077,15.64889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| ||
|short_description=p1@Cadm4 | |short_description=p1@Cadm4 | ||
}} | }} |
Latest revision as of 09:33, 26 September 2015
Short description: | p1@Cadm4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cadm4_5end |
Coexpression cluster: | MCL_coexpression_mm9:747 |
Association with transcript: | 0bp_to_ENSMUST00000068023, NM_153112, uc009fps.1_5end |
EntrezGene: | Cadm4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 4.23e-26 | 44 |
neurectodermal cell | 4.23e-26 | 44 |
neural cell | 2.26e-25 | 43 |
neuron | 4.58e-19 | 33 |
neuronal stem cell | 4.58e-19 | 33 |
neuroblast | 4.58e-19 | 33 |
electrically signaling cell | 4.58e-19 | 33 |
CNS neuron (sensu Vertebrata) | 1.19e-15 | 23 |
neuroblast (sensu Vertebrata) | 1.19e-15 | 23 |
electrically responsive cell | 3.73e-15 | 39 |
electrically active cell | 3.73e-15 | 39 |
embryonic cell | 3.07e-11 | 70 |
migratory neural crest cell | 4.36e-07 | 10 |
neuron associated cell | 4.36e-07 | 10 |
glial cell (sensu Vertebrata) | 4.36e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 4.36e-07 | 10 |
glial cell | 4.36e-07 | 10 |
glioblast | 4.36e-07 | 10 |
glioblast (sensu Vertebrata) | 4.36e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 5.39e-40 | 75 |
ectoderm-derived structure | 3.84e-39 | 95 |
ectoderm | 3.84e-39 | 95 |
presumptive ectoderm | 3.84e-39 | 95 |
central nervous system | 1.79e-38 | 73 |
neurectoderm | 4.14e-28 | 64 |
neural plate | 4.14e-28 | 64 |
presumptive neural plate | 4.14e-28 | 64 |
regional part of nervous system | 1.31e-27 | 54 |
ecto-epithelium | 1.89e-26 | 73 |
neural tube | 5.82e-26 | 52 |
neural rod | 5.82e-26 | 52 |
future spinal cord | 5.82e-26 | 52 |
neural keel | 5.82e-26 | 52 |
brain | 3.90e-22 | 47 |
future brain | 3.90e-22 | 47 |
regional part of brain | 1.10e-21 | 46 |
structure with developmental contribution from neural crest | 1.67e-21 | 92 |
gray matter | 7.59e-20 | 34 |
pre-chordal neural plate | 1.46e-19 | 49 |
anterior neural tube | 1.29e-18 | 40 |
regional part of forebrain | 3.59e-18 | 39 |
forebrain | 3.59e-18 | 39 |
future forebrain | 3.59e-18 | 39 |
brain grey matter | 3.04e-16 | 29 |
regional part of telencephalon | 3.04e-16 | 29 |
telencephalon | 3.04e-16 | 29 |
cerebral cortex | 1.29e-11 | 21 |
cerebral hemisphere | 1.29e-11 | 21 |
pallium | 1.29e-11 | 21 |
regional part of cerebral cortex | 1.78e-09 | 17 |
posterior neural tube | 6.59e-08 | 12 |
chordal neural plate | 6.59e-08 | 12 |