FFCP PHASE1:Mm9::chr10:79336978..79337184,-: Difference between revisions
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{{FFCP|EntrezGene=216152|HGNC=|MCL_coexpression_id=22|UniProt=E9Q8U7,E9Q4F1,E9PVZ4,Q5DTP6|association_with_transcript=0bp_to_ENSMUST00000113452,ENSMUST00000163111,ENSMUST00000165601,ENSMUST00000166023,ENSMUST00000167707,uc007gae.1_5end|description=CAGE_peak_1_at_BC005764_5end|id=chr10:79336978..79337184,-|ontology_enrichment_celltype=CL:0000540!8.48e-16!33;CL:0000047!8.48e-16!33;CL:0000031!8.48e-16!33;CL:0000404!8.48e-16!33;CL:0000117!3.43e-15!23;CL:0000337!3.43e-15!23;CL:0000393!1.23e-13!39;CL:0000211!1.23e-13!39;CL:0002319!7.49e-12!43;CL:0000221!7.89e-12!44;CL:0000133!7.89e-12!44;CL:0000055!8.18e-10!50|ontology_enrichment_celltype_v019_2=CL:0000540,6.80e-16,33;CL:0000047,6.80e-16,33;CL:0000031,6.80e-16,33;CL:0000404,6.80e-16,33;CL:0000117,2.78e-15,23;CL:0000337,2.78e-15,23;CL:0000393,1.02e-13,39;CL:0000211,1.02e-13,39;CL:0002319,6.38e-12,43;CL:0000221,6.73e-12,44;CL:0000133,6.73e-12,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!3.16e-21!73;UBERON:0005743!3.16e-21!73;UBERON:0000073!1.09e-20!75;UBERON:0001016!1.09e-20!75;UBERON:0004121!3.74e-19!102;UBERON:0000924!3.74e-19!102;UBERON:0006601!3.74e-19!102;UBERON:0002346!4.72e-18!71;UBERON:0003075!4.72e-18!71;UBERON:0007284!4.72e-18!71;UBERON:0000033!1.97e-16!63;UBERON:0001049!2.53e-16!52;UBERON:0005068!2.53e-16!52;UBERON:0006241!2.53e-16!52;UBERON:0007135!2.53e-16!52;UBERON:0003056!2.97e-16!49;UBERON:0000955!5.27e-15!50;UBERON:0006238!5.27e-15!50;UBERON:0002616!1.30e-14!49;UBERON:0002020!5.31e-14!34;UBERON:0003080!1.01e-13!40;UBERON:0002780!3.44e-13!39;UBERON:0001890!3.44e-13!39;UBERON:0006240!3.44e-13!39;UBERON:0002791!6.07e-11!29;UBERON:0003528!6.07e-11!29;UBERON:0001893!6.07e-11!29;UBERON:0000153!5.09e-08!94;UBERON:0000956!7.90e-07!21;UBERON:0001869!7.90e-07!21;UBERON:0000203!7.90e-07!21|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.33e-21,73;UBERON:0001016,8.06e-21,75;UBERON:0004121,2.72e-20,95;UBERON:0000924,2.72e-20,95;UBERON:0006601,2.72e-20,95;UBERON:0002346,1.12e-19,64;UBERON:0003075,1.12e-19,64;UBERON:0007284,1.12e-19,64;UBERON:0010371,6.78e-18,73;UBERON:0000073,7.97e-18,54;UBERON:0001049,2.01e-16,52;UBERON:0005068,2.01e-16,52;UBERON:0006241,2.01e-16,52;UBERON:0007135,2.01e-16,52;UBERON:0003056,2.37e-16,49;UBERON:0002020,4.38e-14,34;UBERON:0003080,8.41e-14,40;UBERON:0000955,1.14e-13,47;UBERON:0006238,1.14e-13,47;UBERON:0002616,2.76e-13,46;UBERON:0002780,2.87e-13,39;UBERON:0001890,2.87e-13,39;UBERON:0006240,2.87e-13,39;UBERON:0010314,2.56e-11,92;UBERON:0003528,5.25e-11,29;UBERON:0002791,5.25e-11,29;UBERON:0001893,5.25e-11,29;UBERON:0000956,7.27e-07,21;UBERON:0001869,7.27e-07,21;UBERON:0000203,7.27e-07,21|phase1_expression=29.9478344085965,0,0,0,0,0,0,0,0,0,0,0,0,0,0.333109761815663,0.404950534779652,0.699561878128147,0.315462165358238,0,0.42438965179803,12.5013636522073,19.9574811913779,39.1799683708403,0.159992422793407,0,0,0,0,0,0.504060259519861,0.221730510655305,0,0,0,0,0.166234645358492,0,5.4409111995798,13.2827008569046,2.61761871986899,0,2.73218193983378,1.94204141212461,14.9817213390937,18.6533553443907,38.9119114582765,20.342174953049,6.32272953503295,3.07560655828261,1.1665793944457,2.09979632438044,11.5002051491977,0,0,0,3.8588915405392,10.8882707176728,2.06268836910977,355.470021730313,329.561380086477,412.624243682523,7.79342423759004,3.55717918444456,6.74924787961049,5.93319817540185,5.6838409195688,20.6724076257699,22.2846617086502,227.080250955566,272.711995430015,232.82973221598,206.52566172395,183.320888989839,262.252801119217,230.891739682931,409.052360041459,92.4973400394865,71.5049093277051,72.9631032967156,371.259899960496,288.91797849641,291.711487511786,60.3035277842983,97.3579315354806,73.8015536761993,238.649154233671,223.523538854592,292.460730499897,2.65041676666144,25.8454735565206,0,0,0.679971333707751,1.61910957491345,0,0,2.66844398250329,1.87473354835864,1.81850203222008,2.47337702157238,22.6757905840456,8.98285341900225,33.1246811618639,49.7746692207332,0.216491041011214,0,0,2.05530983494308,2.84831672011889,2.82040064223167,31.0538734911383,27.7063585264048,19.832932764021,18.8403300690778,15.2865319276416,0.502666365318702,0,4.48258006451726,11.4999371753484,5.82360659810673,7.50861162765338,6.78825354389311,1.86391761218122,18.737971008739,18.2218634927706,2.29911349687732,79.3176124229192,72.5882304502023,73.5736614753045,92.4208245127756,56.2725741466911,250.680432465165,45.5419718903764,29.407277592988,66.6999623036188,57.2711658629185,21.6917845001174,10.5745925018579,0.505445516867349,1.68353484709179,78.4626271065103,74.0284776275783,98.1338607439153,90.2721858835933,94.5026973211944,91.7294237239525,91.6402866194148,8.01980449290949,81.0535653427487,107.979571775825,92.1983890619092,70.3618301092515,55.0533553466684,17.4126083261083,16.0510066398196,58.516074444637,73.0301714805764,79.0058074842176,98.3205707908751,14.2916783049496,17.8239805585633,12.064158117888,11.6004920436753,8.65762619688577,6.78775296704464,5.58081467400979,4.2923744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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=216152 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=E9Q8U7,E9Q4F1,E9PVZ4,Q5DTP6 | |||
|association_with_transcript=0bp_to_ENSMUST00000113452,ENSMUST00000163111,ENSMUST00000165601,ENSMUST00000166023,ENSMUST00000167707,uc007gae.1_5end | |||
|cluster_id=chr10:79336978..79337184,- | |||
|description=CAGE_peak_1_at_BC005764_5end | |||
|id=chr10:79336978..79337184,- | |||
|ontology_enrichment_celltype=CL:0000540!8.48e-16!33;CL:0000047!8.48e-16!33;CL:0000031!8.48e-16!33;CL:0000404!8.48e-16!33;CL:0000117!3.43e-15!23;CL:0000337!3.43e-15!23;CL:0000393!1.23e-13!39;CL:0000211!1.23e-13!39;CL:0002319!7.49e-12!43;CL:0000221!7.89e-12!44;CL:0000133!7.89e-12!44;CL:0000055!8.18e-10!50 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.80e-16,33;CL:0000047,6.80e-16,33;CL:0000031,6.80e-16,33;CL:0000404,6.80e-16,33;CL:0000117,2.78e-15,23;CL:0000337,2.78e-15,23;CL:0000393,1.02e-13,39;CL:0000211,1.02e-13,39;CL:0002319,6.38e-12,43;CL:0000221,6.73e-12,44;CL:0000133,6.73e-12,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.16e-21!73;UBERON:0005743!3.16e-21!73;UBERON:0000073!1.09e-20!75;UBERON:0001016!1.09e-20!75;UBERON:0004121!3.74e-19!102;UBERON:0000924!3.74e-19!102;UBERON:0006601!3.74e-19!102;UBERON:0002346!4.72e-18!71;UBERON:0003075!4.72e-18!71;UBERON:0007284!4.72e-18!71;UBERON:0000033!1.97e-16!63;UBERON:0001049!2.53e-16!52;UBERON:0005068!2.53e-16!52;UBERON:0006241!2.53e-16!52;UBERON:0007135!2.53e-16!52;UBERON:0003056!2.97e-16!49;UBERON:0000955!5.27e-15!50;UBERON:0006238!5.27e-15!50;UBERON:0002616!1.30e-14!49;UBERON:0002020!5.31e-14!34;UBERON:0003080!1.01e-13!40;UBERON:0002780!3.44e-13!39;UBERON:0001890!3.44e-13!39;UBERON:0006240!3.44e-13!39;UBERON:0002791!6.07e-11!29;UBERON:0003528!6.07e-11!29;UBERON:0001893!6.07e-11!29;UBERON:0000153!5.09e-08!94;UBERON:0000956!7.90e-07!21;UBERON:0001869!7.90e-07!21;UBERON:0000203!7.90e-07!21 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.33e-21,73;UBERON:0001016,8.06e-21,75;UBERON:0004121,2.72e-20,95;UBERON:0000924,2.72e-20,95;UBERON:0006601,2.72e-20,95;UBERON:0002346,1.12e-19,64;UBERON:0003075,1.12e-19,64;UBERON:0007284,1.12e-19,64;UBERON:0010371,6.78e-18,73;UBERON:0000073,7.97e-18,54;UBERON:0001049,2.01e-16,52;UBERON:0005068,2.01e-16,52;UBERON:0006241,2.01e-16,52;UBERON:0007135,2.01e-16,52;UBERON:0003056,2.37e-16,49;UBERON:0002020,4.38e-14,34;UBERON:0003080,8.41e-14,40;UBERON:0000955,1.14e-13,47;UBERON:0006238,1.14e-13,47;UBERON:0002616,2.76e-13,46;UBERON:0002780,2.87e-13,39;UBERON:0001890,2.87e-13,39;UBERON:0006240,2.87e-13,39;UBERON:0010314,2.56e-11,92;UBERON:0003528,5.25e-11,29;UBERON:0002791,5.25e-11,29;UBERON:0001893,5.25e-11,29;UBERON:0000956,7.27e-07,21;UBERON:0001869,7.27e-07,21;UBERON:0000203,7.27e-07,21 | |||
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| |||
|short_description=p1@BC005764 | |||
}} |
Latest revision as of 09:06, 26 September 2015
Short description: | p1@BC005764 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_BC005764_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | 0bp_to_ENSMUST00000113452, ENSMUST00000163111, ENSMUST00000165601, ENSMUST00000166023, ENSMUST00000167707, uc007gae.1_5end |
EntrezGene: | BC005764 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.80e-16 | 33 |
neuronal stem cell | 6.80e-16 | 33 |
neuroblast | 6.80e-16 | 33 |
electrically signaling cell | 6.80e-16 | 33 |
CNS neuron (sensu Vertebrata) | 2.78e-15 | 23 |
neuroblast (sensu Vertebrata) | 2.78e-15 | 23 |
electrically responsive cell | 1.02e-13 | 39 |
electrically active cell | 1.02e-13 | 39 |
neural cell | 6.38e-12 | 43 |
ectodermal cell | 6.73e-12 | 44 |
neurectodermal cell | 6.73e-12 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.33e-21 | 73 |
nervous system | 8.06e-21 | 75 |
ectoderm-derived structure | 2.72e-20 | 95 |
ectoderm | 2.72e-20 | 95 |
presumptive ectoderm | 2.72e-20 | 95 |
neurectoderm | 1.12e-19 | 64 |
neural plate | 1.12e-19 | 64 |
presumptive neural plate | 1.12e-19 | 64 |
ecto-epithelium | 6.78e-18 | 73 |
regional part of nervous system | 7.97e-18 | 54 |
neural tube | 2.01e-16 | 52 |
neural rod | 2.01e-16 | 52 |
future spinal cord | 2.01e-16 | 52 |
neural keel | 2.01e-16 | 52 |
pre-chordal neural plate | 2.37e-16 | 49 |
gray matter | 4.38e-14 | 34 |
anterior neural tube | 8.41e-14 | 40 |
brain | 1.14e-13 | 47 |
future brain | 1.14e-13 | 47 |
regional part of brain | 2.76e-13 | 46 |
regional part of forebrain | 2.87e-13 | 39 |
forebrain | 2.87e-13 | 39 |
future forebrain | 2.87e-13 | 39 |
structure with developmental contribution from neural crest | 2.56e-11 | 92 |
brain grey matter | 5.25e-11 | 29 |
regional part of telencephalon | 5.25e-11 | 29 |
telencephalon | 5.25e-11 | 29 |
cerebral cortex | 7.27e-07 | 21 |
cerebral hemisphere | 7.27e-07 | 21 |
pallium | 7.27e-07 | 21 |