FFCP PHASE1:Mm9::chr5:9266097..9266202,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=231014 | |EntrezGene=231014 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=278 | |MCL_coexpression_id=278 | ||
|TSSclassifier=NA | |||
|UniProt=Q3UZV7,D6RHB7,E9PUJ3,B9EHI9 | |UniProt=Q3UZV7,D6RHB7,E9PUJ3,B9EHI9 | ||
|association_with_transcript=0bp_to_ENSMUST00000069538,ENSMUST00000115348,ENSMUST00000131626,ENSMUST00000134991,ENSMUST00000152095,ENSMUST00000154662,ENSMUST00000155764,ENSMUST00000166011,NM_172706,uc008wlh.1,uc008wli.1,uc008wlj.1,uc008wlk.1,uc012dsc.1,uc012dsd.1,uc012dse.1_5end | |association_with_transcript=0bp_to_ENSMUST00000069538,ENSMUST00000115348,ENSMUST00000131626,ENSMUST00000134991,ENSMUST00000152095,ENSMUST00000154662,ENSMUST00000155764,ENSMUST00000166011,NM_172706,uc008wlh.1,uc008wli.1,uc008wlj.1,uc008wlk.1,uc012dsc.1,uc012dsd.1,uc012dse.1_5end | ||
|cluster_id=chr5:9266097..9266202,+ | |||
|description=CAGE_peak_1_at_9330182L06Rik_5end | |description=CAGE_peak_1_at_9330182L06Rik_5end | ||
|id=chr5:9266097..9266202,+ | |id=chr5:9266097..9266202,+ | ||
Latest revision as of 09:01, 26 September 2015
| Short description: | p1@9330182L06Rik |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_1_at_9330182L06Rik_5end |
| Coexpression cluster: | MCL_coexpression_mm9:278 |
| Association with transcript: | 0bp_to_ENSMUST00000069538, ENSMUST00000115348, ENSMUST00000131626, ENSMUST00000134991, ENSMUST00000152095, ENSMUST00000154662, ENSMUST00000155764, ENSMUST00000166011, NM_172706, uc008wlh.1, uc008wli.1, uc008wlj.1, uc008wlk.1, uc012dsc.1, uc012dsd.1, uc012dse.1_5end |
| EntrezGene: | 9330182L06Rik |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 6.46e-13 | 33 |
| neuronal stem cell | 6.46e-13 | 33 |
| neuroblast | 6.46e-13 | 33 |
| electrically signaling cell | 6.46e-13 | 33 |
| electrically responsive cell | 2.27e-10 | 39 |
| electrically active cell | 2.27e-10 | 39 |
| neural cell | 1.45e-09 | 43 |
| ectodermal cell | 2.31e-09 | 44 |
| neurectodermal cell | 2.31e-09 | 44 |
| CNS neuron (sensu Vertebrata) | 2.85e-09 | 23 |
| neuroblast (sensu Vertebrata) | 2.85e-09 | 23 |
| Ontology term | p-value | n |
|---|---|---|
| central nervous system | 1.48e-27 | 73 |
| nervous system | 4.53e-27 | 75 |
| neurectoderm | 5.41e-25 | 64 |
| neural plate | 5.41e-25 | 64 |
| presumptive neural plate | 5.41e-25 | 64 |
| ectoderm-derived structure | 8.28e-24 | 95 |
| ectoderm | 8.28e-24 | 95 |
| presumptive ectoderm | 8.28e-24 | 95 |
| regional part of nervous system | 2.20e-22 | 54 |
| neural tube | 4.77e-21 | 52 |
| neural rod | 4.77e-21 | 52 |
| future spinal cord | 4.77e-21 | 52 |
| neural keel | 4.77e-21 | 52 |
| ecto-epithelium | 4.97e-21 | 73 |
| structure with developmental contribution from neural crest | 3.22e-18 | 92 |
| brain | 6.68e-18 | 47 |
| future brain | 6.68e-18 | 47 |
| pre-chordal neural plate | 7.02e-18 | 49 |
| regional part of brain | 1.76e-17 | 46 |
| anterior neural tube | 8.28e-16 | 40 |
| regional part of forebrain | 4.09e-15 | 39 |
| forebrain | 4.09e-15 | 39 |
| future forebrain | 4.09e-15 | 39 |
| gray matter | 7.55e-14 | 34 |
| brain grey matter | 3.10e-11 | 29 |
| regional part of telencephalon | 3.10e-11 | 29 |
| telencephalon | 3.10e-11 | 29 |
| occipital lobe | 1.74e-07 | 10 |
| visual cortex | 1.74e-07 | 10 |
| neocortex | 1.74e-07 | 10 |
| cerebral cortex | 2.38e-07 | 21 |
| cerebral hemisphere | 2.38e-07 | 21 |
| pallium | 2.38e-07 | 21 |
| regional part of cerebral cortex | 2.44e-07 | 17 |
