FFCP PHASE1:Mm9::chr12:112916357..112916371,+: Difference between revisions
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{{FFCP|EntrezGene=328162|HGNC=|UniProt=Q80XC2|association_with_transcript=41bp_to_ENSMUST00000084947,ENSMUST00000168338,NM_001099792,NM_001099793,NM_177374,uc007pdo.1,uc007pdp.1,uc007pdq.1_5end|description=CAGE_peak_2_at_Trmt61a_5end|id=chr12:112916357..112916371,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!3.93e-11!63;UBERON:0000955!2.07e-10!50;UBERON:0006238!2.07e-10!50;UBERON:0002616!6.66e-10!49;UBERON:0003056!1.02e-09!49;UBERON:0003080!5.78e-09!40;UBERON:0000073!8.24e-09!75;UBERON:0001016!8.24e-09!75;UBERON:0002619!1.02e-08!17;UBERON:0002780!1.28e-08!39;UBERON:0001890!1.28e-08!39;UBERON:0006240!1.28e-08!39;UBERON:0001049!1.53e-08!52;UBERON:0005068!1.53e-08!52;UBERON:0006241!1.53e-08!52;UBERON:0007135!1.53e-08!52;UBERON:0001017!1.92e-08!73;UBERON:0005743!1.92e-08!73;UBERON:0002791!3.03e-08!29;UBERON:0003528!3.03e-08!29;UBERON:0001893!3.03e-08!29;UBERON:0007811!4.14e-08!86;UBERON:0002021!1.88e-07!10;UBERON:0000411!1.88e-07!10;UBERON:0001950!1.88e-07!10;UBERON:0002020!2.52e-07!34;UBERON:0000956!3.96e-07!21;UBERON:0001869!3.96e-07!21;UBERON:0000203!3.96e-07!21;UBERON:0002346!5.47e-07!71;UBERON:0003075!5.47e-07!71;UBERON:0007284!5.47e-07!71|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.86e-11,49;UBERON:0003080,4.01e-11,40;UBERON:0000955,6.30e-11,47;UBERON:0006238,6.30e-11,47;UBERON:0003528,8.16e-11,29;UBERON:0002791,8.16e-11,29;UBERON:0001893,8.16e-11,29;UBERON:0002619,8.59e-11,17;UBERON:0000073,1.03e-10,54;UBERON:0002780,1.12e-10,39;UBERON:0001890,1.12e-10,39;UBERON:0006240,1.12e-10,39;UBERON:0002616,2.61e-10,46;UBERON:0001016,3.29e-10,75;UBERON:0001017,4.58e-10,73;UBERON:0002346,6.57e-10,64;UBERON:0003075,6.57e-10,64;UBERON:0007284,6.57e-10,64;UBERON:0001049,7.48e-10,52;UBERON:0005068,7.48e-10,52;UBERON:0006241,7.48e-10,52;UBERON:0007135,7.48e-10,52;UBERON:0002020,1.37e-09,34;UBERON:0002021,3.64e-09,10;UBERON:0000411,3.64e-09,10;UBERON:0001950,3.64e-09,10;UBERON:0000956,7.84e-09,21;UBERON:0001869,7.84e-09,21;UBERON:0000203,7.84e-09,21;UBERON:0004121,1.78e-08,95;UBERON:0000924,1.78e-08,95;UBERON:0006601,1.78e-08,95;UBERON:0010371,2.24e-08,73|phase1_expression=1.44133962394315,1.04692622291808,0.909998478779072,0.60492842261366,0.500895729946347,1.6787927191189,0.934450562382103,1.03298658753261,6.89864738543167,6.55380673701582,6.33506482434368,5.2649624936922,1.36960583944965,2.62261207256992,0.999329285446988,0.809901069559304,0,1.26184866143295,0.822686601634433,0.84877930359606,1.61582251287033,0.297872853602656,0.783599367416806,1.11994695955385,2.06468352960453,0,1.29228598847722,0.861884930743556,0.190023419456374,0.504060259519861,0.886922042621219,1.90509202037889,2.46025915033828,0,0.577703239502549,2.32728503501889,2.04169356262369,0,0,0,0,0,0.485510353031154,2.01434908760924,0.811015449756117,1.10128051297009,0.782391344348039,1.09012578190223,1.09843091367236,1.1665793944457,0.839918529752175,5.75010257459886,0.503347818173209,0.725362142011344,1.00828139742739,0.771778308107841,0.286533439938757,0,1.61853168687678,3.1739458756322,0,1.35537812827653,0,1.7997994345628,0,2.8419204597844,0.898800331555214,1.15265491596466,0.518448061542388,0.675029691658453,0.210324961351382,0.285650984403804,1.98781686856452,1.22490799214954,1.53352753629178,2.75765635983006,3.30347642998166,1.65993539510744,1.0752457327937,1.45074916503213,1.46380229763855,1.04182674111352,2.23346399201105,0,1.37518422999129,1.17851434189467,0.427115042397309,0.745597783301202,2.49896437999507,0.831287161174641,0.289864488701678,0,4.0798280022465,0,0,0.448026887097336,0.702222100658759,0.340860645156116,0,0.35333957451034,1.12674735821344,0,0,0,1.29894624606728,1.26679932737549,1.01104889002957,1.1418387971906,0.258937883647172,0.593768556259299,1.38788261412909,0.304465478312141,0,0.452167921657868,0.352766121407114,0.376999773989026,0.247194967734374,0.433798070759735,0,0.970601099684455,0.883366073841574,0,0,0.585561594023094,0.83778682725382,2.04365644166873,0.838705871541442,0.599902730993408,0.635351135365324,1.64769703345305,2.28750301409313,1.88481528169297,2.9550134432687,5.37002460393694,3.53239675751252,3.40706652442291,0.81471491080253,0.373220911830279,1.0108910337347,1.26265113531884,1.82168620147785,2.06911893990126,0.360124259610698,1.05493372485001,0.884474488967262,0.768682321709099,1.40552586839593,1.29351685369508,1.29340795759705,0.378212160335639,0,0.43839146485515,0.278047249225598,1.39300866608867,0.411564272815887,1.19420560091096,2.1066395619397,1.80143534980301,0.852490498186778,0.414251545071004,0.703578179943289,0.720248245844059,0.23674473558521,0.196764231747404,0.771335564436891,1.16266972375204,1.3413670069981,0.233530684734339,0.16455984991348,0.492502392237286,0.162137619091711,0.146199987425332,0.658650345873152,0.402619256281115,3.57492912559016,1.02904612379284,0.330418782983798,2.3800550999719,1.49301775374664,1.16118335930219,1.41754207454303,0.60505057387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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=328162 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=Q80XC2 | |||
|association_with_transcript=41bp_to_ENSMUST00000084947,ENSMUST00000168338,NM_001099792,NM_001099793,NM_177374,uc007pdo.1,uc007pdp.1,uc007pdq.1_5end | |||
|cluster_id=chr12:112916357..112916371,+ | |||
|description=CAGE_peak_2_at_Trmt61a_5end | |||
|id=chr12:112916357..112916371,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!3.93e-11!63;UBERON:0000955!2.07e-10!50;UBERON:0006238!2.07e-10!50;UBERON:0002616!6.66e-10!49;UBERON:0003056!1.02e-09!49;UBERON:0003080!5.78e-09!40;UBERON:0000073!8.24e-09!75;UBERON:0001016!8.24e-09!75;UBERON:0002619!1.02e-08!17;UBERON:0002780!1.28e-08!39;UBERON:0001890!1.28e-08!39;UBERON:0006240!1.28e-08!39;UBERON:0001049!1.53e-08!52;UBERON:0005068!1.53e-08!52;UBERON:0006241!1.53e-08!52;UBERON:0007135!1.53e-08!52;UBERON:0001017!1.92e-08!73;UBERON:0005743!1.92e-08!73;UBERON:0002791!3.03e-08!29;UBERON:0003528!3.03e-08!29;UBERON:0001893!3.03e-08!29;UBERON:0007811!4.14e-08!86;UBERON:0002021!1.88e-07!10;UBERON:0000411!1.88e-07!10;UBERON:0001950!1.88e-07!10;UBERON:0002020!2.52e-07!34;UBERON:0000956!3.96e-07!21;UBERON:0001869!3.96e-07!21;UBERON:0000203!3.96e-07!21;UBERON:0002346!5.47e-07!71;UBERON:0003075!5.47e-07!71;UBERON:0007284!5.47e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,1.86e-11,49;UBERON:0003080,4.01e-11,40;UBERON:0000955,6.30e-11,47;UBERON:0006238,6.30e-11,47;UBERON:0003528,8.16e-11,29;UBERON:0002791,8.16e-11,29;UBERON:0001893,8.16e-11,29;UBERON:0002619,8.59e-11,17;UBERON:0000073,1.03e-10,54;UBERON:0002780,1.12e-10,39;UBERON:0001890,1.12e-10,39;UBERON:0006240,1.12e-10,39;UBERON:0002616,2.61e-10,46;UBERON:0001016,3.29e-10,75;UBERON:0001017,4.58e-10,73;UBERON:0002346,6.57e-10,64;UBERON:0003075,6.57e-10,64;UBERON:0007284,6.57e-10,64;UBERON:0001049,7.48e-10,52;UBERON:0005068,7.48e-10,52;UBERON:0006241,7.48e-10,52;UBERON:0007135,7.48e-10,52;UBERON:0002020,1.37e-09,34;UBERON:0002021,3.64e-09,10;UBERON:0000411,3.64e-09,10;UBERON:0001950,3.64e-09,10;UBERON:0000956,7.84e-09,21;UBERON:0001869,7.84e-09,21;UBERON:0000203,7.84e-09,21;UBERON:0004121,1.78e-08,95;UBERON:0000924,1.78e-08,95;UBERON:0006601,1.78e-08,95;UBERON:0010371,2.24e-08,73 | |||
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| |||
|short_description=p2@Trmt61a | |||
}} |
Latest revision as of 08:49, 26 September 2015
Short description: | p2@Trmt61a |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Trmt61a_5end |
Coexpression cluster: | NA |
Association with transcript: | 41bp_to_ENSMUST00000084947, ENSMUST00000168338, NM_001099792, NM_001099793, NM_177374, uc007pdo.1, uc007pdp.1, uc007pdq.1_5end |
EntrezGene: | Trmt61a |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 1.86e-11 | 49 |
anterior neural tube | 4.01e-11 | 40 |
brain | 6.30e-11 | 47 |
future brain | 6.30e-11 | 47 |
brain grey matter | 8.16e-11 | 29 |
regional part of telencephalon | 8.16e-11 | 29 |
telencephalon | 8.16e-11 | 29 |
regional part of cerebral cortex | 8.59e-11 | 17 |
regional part of nervous system | 1.03e-10 | 54 |
regional part of forebrain | 1.12e-10 | 39 |
forebrain | 1.12e-10 | 39 |
future forebrain | 1.12e-10 | 39 |
regional part of brain | 2.61e-10 | 46 |
nervous system | 3.29e-10 | 75 |
central nervous system | 4.58e-10 | 73 |
neurectoderm | 6.57e-10 | 64 |
neural plate | 6.57e-10 | 64 |
presumptive neural plate | 6.57e-10 | 64 |
neural tube | 7.48e-10 | 52 |
neural rod | 7.48e-10 | 52 |
future spinal cord | 7.48e-10 | 52 |
neural keel | 7.48e-10 | 52 |
gray matter | 1.37e-09 | 34 |
occipital lobe | 3.64e-09 | 10 |
visual cortex | 3.64e-09 | 10 |
neocortex | 3.64e-09 | 10 |
cerebral cortex | 7.84e-09 | 21 |
cerebral hemisphere | 7.84e-09 | 21 |
pallium | 7.84e-09 | 21 |
ectoderm-derived structure | 1.78e-08 | 95 |
ectoderm | 1.78e-08 | 95 |
presumptive ectoderm | 1.78e-08 | 95 |
ecto-epithelium | 2.24e-08 | 73 |