FFCP PHASE1:Mm9::chr1:127808737..127808776,-: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(6 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=72585 | |EntrezGene=72585 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BLC3 | |UniProt=Q8BLC3 | ||
|association_with_transcript=14bp_to_ENSMUST00000159417,NM_145100,uc007ckj.1_5end | |association_with_transcript=14bp_to_ENSMUST00000159417,NM_145100,uc007ckj.1_5end | ||
|cluster_id=chr1:127808737..127808776,- | |||
|description=CAGE_peak_1_at_Lypd1_5end | |description=CAGE_peak_1_at_Lypd1_5end | ||
|id=chr1:127808737..127808776,- | |id=chr1:127808737..127808776,- | ||
|ontology_enrichment_celltype=CL:0000393!3.61e-13!39;CL:0000211!3.61e-13!39;CL:0000540!1.07e-12!33;CL:0000047!1.07e-12!33;CL:0000031!1.07e-12!33;CL:0000404!1.07e-12!33;CL:0000117!8.15e-11!23;CL:0000337!8.15e-11!23;CL:0000221!1.94e-08!44;CL:0000133!1.94e-08!44;CL:0000055!3.36e-08!50;CL:0002319!4.65e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,1.99e-14,39;CL:0000211,1.99e-14,39;CL:0000540,2.14e-14,33;CL:0000047,2.14e-14,33;CL:0000031,2.14e-14,33;CL:0000404,2.14e-14,33;CL:0000117,3.17e-12,23;CL:0000337,3.17e-12,23;CL:0000221,1.71e-09,44;CL:0000133,1.71e-09,44;CL:0002319,4.69e-09,43 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.27e-25!73;UBERON:0005743!6.27e-25!73;UBERON:0000073!1.22e-23!75;UBERON:0001016!1.22e-23!75;UBERON:0004121!2.15e-23!102;UBERON:0000924!2.15e-23!102;UBERON:0006601!2.15e-23!102;UBERON:0002346!8.27e-23!71;UBERON:0003075!8.27e-23!71;UBERON:0007284!8.27e-23!71;UBERON:0001049!3.36e-20!52;UBERON:0005068!3.36e-20!52;UBERON:0006241!3.36e-20!52;UBERON:0007135!3.36e-20!52;UBERON:0000033!5.86e-20!63;UBERON:0003056!8.89e-19!49;UBERON:0002616!2.58e-18!49;UBERON:0000955!2.89e-18!50;UBERON:0006238!2.89e-18!50;UBERON:0003080!2.27e-16!40;UBERON:0002780!9.13e-16!39;UBERON:0001890!9.13e-16!39;UBERON:0006240!9.13e-16!39;UBERON:0000153!4.13e-15!94;UBERON:0002020!5.93e-15!34;UBERON:0007811!2.30e-14!86;UBERON:0002791!5.08e-12!29;UBERON:0003528!5.08e-12!29;UBERON:0001893!5.08e-12!29;UBERON:0000468!3.04e-08!333;UBERON:0002021!6.59e-08!10;UBERON:0000411!6.59e-08!10;UBERON:0001950!6.59e-08!10;UBERON:0000956!1.11e-07!21;UBERON:0001869!1.11e-07!21;UBERON:0000203!1.11e-07!21;UBERON:0002619!1.49e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.23e-28,73;UBERON:0001016,5.05e-27,75;UBERON:0002346,4.17e-26,64;UBERON:0003075,4.17e-26,64;UBERON:0007284,4.17e-26,64;UBERON:0004121,4.69e-26,95;UBERON:0000924,4.69e-26,95;UBERON:0006601,4.69e-26,95;UBERON:0000073,1.07e-24,54;UBERON:0010371,5.70e-24,73;UBERON:0001049,2.89e-23,52;UBERON:0005068,2.89e-23,52;UBERON:0006241,2.89e-23,52;UBERON:0007135,2.89e-23,52;UBERON:0003056,1.33e-21,49;UBERON:0002616,4.37e-19,46;UBERON:0000955,4.97e-19,47;UBERON:0006238,4.97e-19,47;UBERON:0003080,7.91e-19,40;UBERON:0002780,3.95e-18,39;UBERON:0001890,3.95e-18,39;UBERON:0006240,3.95e-18,39;UBERON:0010314,2.18e-17,92;UBERON:0002020,3.37e-17,34;UBERON:0003528,8.28e-14,29;UBERON:0002791,8.28e-14,29;UBERON:0001893,8.28e-14,29;UBERON:0002021,7.07e-09,10;UBERON:0000411,7.07e-09,10;UBERON:0001950,7.07e-09,10;UBERON:0000956,8.65e-09,21;UBERON:0001869,8.65e-09,21;UBERON:0000203,8.65e-09,21;UBERON:0002619,1.17e-08,17 | |||
|phase1_expression=17.7765220286321,0,0,0.30246421130683,0.500895729946347,0.671517087647559,0.467225281191051,1.29123323441576,0,0,0,0,0,0,0,0,0,0,0,0,7.14363637268986,0,0,0,0,0.57423196411502,0,0,0.190023419456374,0,0,0,0,0,0.577703239502549,0,0.204169356262369,0,0,0,0,0,0,7.93149953246137,6.2853697356099,6.42413632565885,0,0.436050312760893,0.219686182734472,0,0.55994568650145,0,0,0,0,0.257259436035947,0.573066879877513,8.25075347643908,22.0524942336962,26.4495489636016,20.9164363157039,0.338844532069132,0,0,0,0,1.49800055259202,3.84218305321555,1.65903379693564,1.08004750665353,1.47227472945967,37.7059299413021,31.5842013560807,12.9840247167851,9.87208351487835,5.51531271966013,29.731287869835,23.8775322219301,26.8811433198426,11.7378796079873,14.3635600455783,11.4600941522487,21.4970909231063,27.5753678915523,45.075483094159,30.0521157183141,28.7590795214188,28.519115211271,0.227178579999552,0.0755715601067855,2.6087803983151,0,0,0,0,0,1.12355536105401,0,0,0,9.57735254481427,0,0,0,0,0,0,1.25602267690966,0,8.46120192669501,3.12273588179045,1.82679286987285,0.461230994512117,2.86373017049983,2.11659672844269,2.51333182659351,0,0.433798070759735,0,0.323533699894818,0,0,0,4.39171195517321,7.74952815209784,1.02182822083437,0.11981512450592,0,0,30.7070810779887,56.2725741466911,70.7434002395427,68.3129578355646,60.8602788446187,50.9080709170922,65.8699528055096,0.407357455401265,0.373220911830279,0,1.89397670297827,9.75903322220278,10.3455946995063,10.803727788321,6.63101198477146,3.60593445502038,4.61209393025459,3.74806898238915,5.95017752699736,0.431135985865684,3.59301552318857,8.62160508403349,5.91828477554452,4.44875598760957,7.66154766348766,2.46938563689532,2.38841120182192,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.946978942340841,0.393528463494808,1.07986979021165,0.930135779001631,1.3413670069981,0.583826711835847,0.987359099480883,0.985004784474571,0.729619285912702,0.584799949701329,0.658650345873152,0.402619256281115,43.5300193527743,4.42489833230923,0,0.264450566663544,0.853153002140936,0.464473343720877,0.77320476793256,2.8235693447268,2.89091456998331,5.51654315726422,0,4.77626968699632,4.27269854960458,4.17808591286417,2.53453313254856,0,1.29682829924817,0.796565093017469,1.13800740571849,0.799739588268102,2.25415471346161,0.814605311381257,1.55161989734101,0.350679099451593,0.252946148497029,0.147610147979602,0.156998727841375,0.493588655687202,0,0.667380422864376,0.589676985339609,0.449724224769707,0.202860121388503,0.482354319504834,0.50925170356284,1.43848068725405,0.972811360650212,0,0,0.744281895337007,0.312037673114561,0,0,0.482443521363367,0.184753190166605,2.4633883530163,0.651859905768103,0.169745085775188,0.234690248288502,0.670025029767263,0.476087281772027,0.780534591431195,0.945810864637146,0.8858587585951,0,0.327726629431476,0.518054945597687,0,0,0,0.491764273019036,0,30.8257132776561,30.3578268273806,0,0,1.89304931649754,1.56175497718655,2.58508077279359,5.01834475700359,6.01556420022464,7.35998980050964,5.26253912177363,7.3063964477828,6.32460444714438,2.24924921495265,1.56134093729095,0.712262414669021,0.81443479676788,2.8044920905331,0,0.242780636154981,0.604647113929502,0.377210159511796,0.295301892880773,0.307435147943927,3.10113951801865,0.363533729477506,0.356497378384721,0.948110273807448,0,0,11.234506989875,6.30213829109586,7.76152102696527,5.78709994585299,3.90148514013002,9.27517851530767,5.10101963866575,5.17590413494819,1.40803024838226,0,0,0.49465875882444,2.42196640043858,0.72375509913787,1.07435109602823,1.96969079694074,0.874442509889552,17.9862542950194,0,0.412773735926445,0.185194527369712,0,0.136694227721025,0.228778173206523,0,0,0,0.954670618015114,0.632671987162271,0.406638934253697,1.29606408986162,0.209088296014469,2.18362563746178,2.15782954215713,1.48776220305605,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0.13020438484395,0.209718688851422,0,0,1.58005560314089,13.3798642091508,13.1470025170979,6.49604114888975,2.8644271306797,2.38417625737518,2.76449533895928,3.39685912501528,2.22126189885925,4.26758117267999,2.72230699869469,0.38983152295901,1.05833025804362,0.467507608726276,0,0.665957860122194,0.179427713218951,0,0.772758376128762,0.750729901804728,3.11357761254351,2.35805216986972,0,72.2882358549845,53.3977274348325,55.5708648036215,57.0552565381043,40.4198686664679,36.2589070747056,51.3017100176172,49.5353323546642,35.345107900768,33.1366599521165,3.1136204275253,3.99024873401031,8.36594668195257,4.37592090722929,6.49800804146745,5.51530525350042,8.22312892865976,5.35691148821125,5.13470735346904,6.57012750585873,5.57654459758527,5.28153755881013,5.05664140337365,4.09760975391163,4.25022470271538,7.1444053692461,4.40360438590451,5.78727661391115,2.06042950401653,6.62395140604788,5.14303878578123,3.37204031702741,3.57654284920981,6.97662799835177,5.55245344450451,5.58456412085065,6.58540702341981,3.6829759601298,6.11118512306378,7.85599180320834,5.81311588808453,4.82671963640261,3.27384834535751,4.64810523557898,4.05103883060397,13.739581786587,5.38042699424439,5.15690529715916,2.86932498103265,2.20591419119516,3.2461496986859 | |phase1_expression=17.7765220286321,0,0,0.30246421130683,0.500895729946347,0.671517087647559,0.467225281191051,1.29123323441576,0,0,0,0,0,0,0,0,0,0,0,0,7.14363637268986,0,0,0,0,0.57423196411502,0,0,0.190023419456374,0,0,0,0,0,0.577703239502549,0,0.204169356262369,0,0,0,0,0,0,7.93149953246137,6.2853697356099,6.42413632565885,0,0.436050312760893,0.219686182734472,0,0.55994568650145,0,0,0,0,0.257259436035947,0.573066879877513,8.25075347643908,22.0524942336962,26.4495489636016,20.9164363157039,0.338844532069132,0,0,0,0,1.49800055259202,3.84218305321555,1.65903379693564,1.08004750665353,1.47227472945967,37.7059299413021,31.5842013560807,12.9840247167851,9.87208351487835,5.51531271966013,29.731287869835,23.8775322219301,26.8811433198426,11.7378796079873,14.3635600455783,11.4600941522487,21.4970909231063,27.5753678915523,45.075483094159,30.0521157183141,28.7590795214188,28.519115211271,0.227178579999552,0.0755715601067855,2.6087803983151,0,0,0,0,0,1.12355536105401,0,0,0,9.57735254481427,0,0,0,0,0,0,1.25602267690966,0,8.46120192669501,3.12273588179045,1.82679286987285,0.461230994512117,2.86373017049983,2.11659672844269,2.51333182659351,0,0.433798070759735,0,0.323533699894818,0,0,0,4.39171195517321,7.74952815209784,1.02182822083437,0.11981512450592,0,0,30.7070810779887,56.2725741466911,70.7434002395427,68.3129578355646,60.8602788446187,50.9080709170922,65.8699528055096,0.407357455401265,0.373220911830279,0,1.89397670297827,9.75903322220278,10.3455946995063,10.803727788321,6.63101198477146,3.60593445502038,4.61209393025459,3.74806898238915,5.95017752699736,0.431135985865684,3.59301552318857,8.62160508403349,5.91828477554452,4.44875598760957,7.66154766348766,2.46938563689532,2.38841120182192,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.946978942340841,0.393528463494808,1.07986979021165,0.930135779001631,1.3413670069981,0.583826711835847,0.987359099480883,0.985004784474571,0.729619285912702,0.584799949701329,0.658650345873152,0.402619256281115,43.5300193527743,4.42489833230923,0,0.264450566663544,0.853153002140936,0.464473343720877,0.77320476793256,2.8235693447268,2.89091456998331,5.51654315726422,0,4.77626968699632,4.27269854960458,4.17808591286417,2.53453313254856,0,1.29682829924817,0.796565093017469,1.13800740571849,0.799739588268102,2.25415471346161,0.814605311381257,1.55161989734101,0.350679099451593,0.252946148497029,0.147610147979602,0.156998727841375,0.493588655687202,0,0.667380422864376,0.589676985339609,0.449724224769707,0.202860121388503,0.482354319504834,0.50925170356284,1.43848068725405,0.972811360650212,0,0,0.744281895337007,0.312037673114561,0,0,0.482443521363367,0.184753190166605,2.4633883530163,0.651859905768103,0.169745085775188,0.234690248288502,0.670025029767263,0.476087281772027,0.780534591431195,0.945810864637146,0.8858587585951,0,0.327726629431476,0.518054945597687,0,0,0,0.491764273019036,0,30.8257132776561,30.3578268273806,0,0,1.89304931649754,1.56175497718655,2.58508077279359,5.01834475700359,6.01556420022464,7.35998980050964,5.26253912177363,7.3063964477828,6.32460444714438,2.24924921495265,1.56134093729095,0.712262414669021,0.81443479676788,2.8044920905331,0,0.242780636154981,0.604647113929502,0.377210159511796,0.295301892880773,0.307435147943927,3.10113951801865,0.363533729477506,0.356497378384721,0.948110273807448,0,0,11.234506989875,6.30213829109586,7.76152102696527,5.78709994585299,3.90148514013002,9.27517851530767,5.10101963866575,5.17590413494819,1.40803024838226,0,0,0.49465875882444,2.42196640043858,0.72375509913787,1.07435109602823,1.96969079694074,0.874442509889552,17.9862542950194,0,0.412773735926445,0.185194527369712,0,0.136694227721025,0.228778173206523,0,0,0,0.954670618015114,0.632671987162271,0.406638934253697,1.29606408986162,0.209088296014469,2.18362563746178,2.15782954215713,1.48776220305605,0,0.129614973291793,0,0,0.149516546043979,0.165458490457098,0,0.129159823477731,0.168956125490778,0,0.13020438484395,0.209718688851422,0,0,1.58005560314089,13.3798642091508,13.1470025170979,6.49604114888975,2.8644271306797,2.38417625737518,2.76449533895928,3.39685912501528,2.22126189885925,4.26758117267999,2.72230699869469,0.38983152295901,1.05833025804362,0.467507608726276,0,0.665957860122194,0.179427713218951,0,0.772758376128762,0.750729901804728,3.11357761254351,2.35805216986972,0,72.2882358549845,53.3977274348325,55.5708648036215,57.0552565381043,40.4198686664679,36.2589070747056,51.3017100176172,49.5353323546642,35.345107900768,33.1366599521165,3.1136204275253,3.99024873401031,8.36594668195257,4.37592090722929,6.49800804146745,5.51530525350042,8.22312892865976,5.35691148821125,5.13470735346904,6.57012750585873,5.57654459758527,5.28153755881013,5.05664140337365,4.09760975391163,4.25022470271538,7.1444053692461,4.40360438590451,5.78727661391115,2.06042950401653,6.62395140604788,5.14303878578123,3.37204031702741,3.57654284920981,6.97662799835177,5.55245344450451,5.58456412085065,6.58540702341981,3.6829759601298,6.11118512306378,7.85599180320834,5.81311588808453,4.82671963640261,3.27384834535751,4.64810523557898,4.05103883060397,13.739581786587,5.38042699424439,5.15690529715916,2.86932498103265,2.20591419119516,3.2461496986859 | ||
|short_description=p1@Lypd1 | |short_description=p1@Lypd1 | ||
}} | }} |
Latest revision as of 07:07, 26 September 2015
Short description: | p1@Lypd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lypd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 14bp_to_ENSMUST00000159417, NM_145100, uc007ckj.1_5end |
EntrezGene: | Lypd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 1.99e-14 | 39 |
electrically active cell | 1.99e-14 | 39 |
neuron | 2.14e-14 | 33 |
neuronal stem cell | 2.14e-14 | 33 |
neuroblast | 2.14e-14 | 33 |
electrically signaling cell | 2.14e-14 | 33 |
CNS neuron (sensu Vertebrata) | 3.17e-12 | 23 |
neuroblast (sensu Vertebrata) | 3.17e-12 | 23 |
ectodermal cell | 1.71e-09 | 44 |
neurectodermal cell | 1.71e-09 | 44 |
neural cell | 4.69e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.23e-28 | 73 |
nervous system | 5.05e-27 | 75 |
neurectoderm | 4.17e-26 | 64 |
neural plate | 4.17e-26 | 64 |
presumptive neural plate | 4.17e-26 | 64 |
ectoderm-derived structure | 4.69e-26 | 95 |
ectoderm | 4.69e-26 | 95 |
presumptive ectoderm | 4.69e-26 | 95 |
regional part of nervous system | 1.07e-24 | 54 |
ecto-epithelium | 5.70e-24 | 73 |
neural tube | 2.89e-23 | 52 |
neural rod | 2.89e-23 | 52 |
future spinal cord | 2.89e-23 | 52 |
neural keel | 2.89e-23 | 52 |
pre-chordal neural plate | 1.33e-21 | 49 |
regional part of brain | 4.37e-19 | 46 |
brain | 4.97e-19 | 47 |
future brain | 4.97e-19 | 47 |
anterior neural tube | 7.91e-19 | 40 |
regional part of forebrain | 3.95e-18 | 39 |
forebrain | 3.95e-18 | 39 |
future forebrain | 3.95e-18 | 39 |
structure with developmental contribution from neural crest | 2.18e-17 | 92 |
gray matter | 3.37e-17 | 34 |
brain grey matter | 8.28e-14 | 29 |
regional part of telencephalon | 8.28e-14 | 29 |
telencephalon | 8.28e-14 | 29 |
occipital lobe | 7.07e-09 | 10 |
visual cortex | 7.07e-09 | 10 |
neocortex | 7.07e-09 | 10 |
cerebral cortex | 8.65e-09 | 21 |
cerebral hemisphere | 8.65e-09 | 21 |
pallium | 8.65e-09 | 21 |
regional part of cerebral cortex | 1.17e-08 | 17 |