FFCP PHASE1:Mm9::chr9:114549293..114549336,-: Difference between revisions
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{{FFCP|EntrezGene=78893|HGNC=|MCL_coexpression_id=463|UniProt=Q8BH15|association_with_transcript=0bp_to_NM_153585,uc009rxq.2,uc009rxr.2,uc009rxs.2,uc009rxu.2,uc009rxv.2,uc009rxw.2,uc012hcc.1_5end|description=CAGE_peak_2_at_Cnot10_5end|id=chr9:114549293..114549336,-|ontology_enrichment_celltype=CL:0000117!7.30e-12!23;CL:0000337!7.30e-12!23;CL:0000540!9.42e-08!33;CL:0000047!9.42e-08!33;CL:0000031!9.42e-08!33;CL:0000404!9.42e-08!33|ontology_enrichment_celltype_v019_2=CL:0000117,7.28e-12,23;CL:0000337,7.28e-12,23;CL:0000540,9.40e-08,33;CL:0000047,9.40e-08,33;CL:0000031,9.40e-08,33;CL:0000404,9.40e-08,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!6.71e-20!63;UBERON:0003056!2.44e-18!49;UBERON:0002346!8.54e-18!71;UBERON:0003075!8.54e-18!71;UBERON:0007284!8.54e-18!71;UBERON:0001049!3.37e-17!52;UBERON:0005068!3.37e-17!52;UBERON:0006241!3.37e-17!52;UBERON:0007135!3.37e-17!52;UBERON:0000955!2.64e-16!50;UBERON:0006238!2.64e-16!50;UBERON:0002616!1.09e-15!49;UBERON:0004121!3.72e-15!102;UBERON:0000924!3.72e-15!102;UBERON:0006601!3.72e-15!102;UBERON:0001017!1.31e-14!73;UBERON:0005743!1.31e-14!73;UBERON:0003080!3.54e-14!40;UBERON:0000073!1.26e-13!75;UBERON:0001016!1.26e-13!75;UBERON:0002780!1.58e-13!39;UBERON:0001890!1.58e-13!39;UBERON:0006240!1.58e-13!39;UBERON:0000153!9.45e-13!94;UBERON:0007811!1.59e-12!86;UBERON:0002020!2.63e-12!34;UBERON:0002791!5.82e-10!29;UBERON:0003528!5.82e-10!29;UBERON:0001893!5.82e-10!29;UBERON:0000922!7.09e-09!328;UBERON:0000468!7.64e-09!333;UBERON:0000991!5.30e-07!18;UBERON:0005564!5.30e-07!18;UBERON:0000475!6.08e-07!200|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.49e-19,64;UBERON:0003075,2.49e-19,64;UBERON:0007284,2.49e-19,64;UBERON:0003056,2.42e-18,49;UBERON:0000073,3.25e-18,54;UBERON:0010371,2.42e-17,73;UBERON:0001049,3.36e-17,52;UBERON:0005068,3.36e-17,52;UBERON:0006241,3.36e-17,52;UBERON:0007135,3.36e-17,52;UBERON:0004121,6.21e-16,95;UBERON:0000924,6.21e-16,95;UBERON:0006601,6.21e-16,95;UBERON:0000955,5.68e-15,47;UBERON:0006238,5.68e-15,47;UBERON:0001017,1.30e-14,73;UBERON:0002616,2.29e-14,46;UBERON:0003080,3.53e-14,40;UBERON:0001016,1.25e-13,75;UBERON:0002780,1.58e-13,39;UBERON:0001890,1.58e-13,39;UBERON:0006240,1.58e-13,39;UBERON:0002020,2.62e-12,34;UBERON:0010314,1.03e-10,92;UBERON:0003528,5.81e-10,29;UBERON:0002791,5.81e-10,29;UBERON:0001893,5.81e-10,29;UBERON:0000922,2.73e-08,320;UBERON:0000991,5.29e-07,18;UBERON:0005564,5.29e-07,18|phase1_expression=5.92550734287738,1.39590163055744,1.36499771816861,2.41971369045464,2.50447864973174,3.52546471014969,1.86890112476421,1.29123323441576,0.281577444303333,0,1.54096171402954,1.11681022593471,0.856003649656029,1.39872643870396,5.3297561890506,4.656931149966,11.8925519281785,2.05050407482854,1.7824876368746,3.81950686618227,9.18467533631554,2.97872853602656,1.30599894569468,1.91990907352088,0.22940928106717,2.8711598205751,2.15380998079537,0.861884930743556,2.09025761402011,2.01624103807945,2.21730510655305,5.08024538767705,3.07532393792285,0,3.46621943701529,4.48833542467929,6.32925004413344,3.76678467663217,1.5626706890476,5.23523743973798,2.94115744015507,4.09827290975067,3.39857247121808,1.38486499773135,1.11514624341466,3.48738829107195,1.56478268869608,2.61630187656536,2.19686182734472,3.11087838518853,3.21968769738334,2.87505128729943,2.01339127269284,0.725362142011344,2.01656279485478,1.54355661621568,1.43266719969378,1.54701627683233,10.7227724255587,10.0508286061686,12.0427966666174,1.69422266034566,2.66788438833342,0,0,0.7104801149461,0.299600110518405,1.15265491596466,7.8804105354443,9.04539786822327,7.36137364729837,12.2829923293636,9.05561017901615,8.69684674426174,10.6388472830242,10.1114066527102,9.91042928994498,8.2996769755372,10.1380311949121,12.1335384711778,13.7231465403614,11.9810075228055,9.21303896704557,12.9435400307286,11.3070703354839,9.42811473515737,9.11178757114259,10.9975673036927,3.02904773332736,2.26714680320357,1.44932244350839,0,1.3599426674155,2.69851595818909,1.94932925234301,0.896053774194671,2.66844398250329,0.852151612890289,1.03914401841148,1.41335829804136,4.78867627240714,2.56652954828636,15.2883143823987,0,3.46385665617943,4.05375784760158,3.0331466700887,2.2836775943812,2.33044095282455,4.15637989381509,4.68410382268567,2.43572382649713,5.5347719341454,4.37095657602605,4.9387256996996,4.27266410520897,5.19109432242185,2.02439099687876,0.884610551949874,3.558870698843,3.75430581382669,3.87900202508178,0,19.9090941967852,11.9384622883669,2.55457055208591,2.03685711660064,1.19980546198682,2.79554499560742,16.1773890557209,9.60751265919116,9.92669381691629,8.16974304903699,8.43861009190091,11.8439185398949,7.94982189032012,6.72139801412087,3.4833951770826,6.82351447770922,8.41767423545896,7.80722657776222,8.96618207290544,11.343914177737,9.0422890701429,9.93332887609387,8.71173297936978,13.0245397138023,15.0047955028629,7.32931175971664,11.1572587299013,8.09375171154165,7.23345917010997,4.44875598760957,3.83077383174383,3.2925141825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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=78893 | |||
|HGNC= | |||
|MCL_coexpression_id=463 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BH15 | |||
|association_with_transcript=0bp_to_NM_153585,uc009rxq.2,uc009rxr.2,uc009rxs.2,uc009rxu.2,uc009rxv.2,uc009rxw.2,uc012hcc.1_5end | |||
|cluster_id=chr9:114549293..114549336,- | |||
|description=CAGE_peak_2_at_Cnot10_5end | |||
|id=chr9:114549293..114549336,- | |||
|ontology_enrichment_celltype=CL:0000117!7.30e-12!23;CL:0000337!7.30e-12!23;CL:0000540!9.42e-08!33;CL:0000047!9.42e-08!33;CL:0000031!9.42e-08!33;CL:0000404!9.42e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,7.28e-12,23;CL:0000337,7.28e-12,23;CL:0000540,9.40e-08,33;CL:0000047,9.40e-08,33;CL:0000031,9.40e-08,33;CL:0000404,9.40e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!6.71e-20!63;UBERON:0003056!2.44e-18!49;UBERON:0002346!8.54e-18!71;UBERON:0003075!8.54e-18!71;UBERON:0007284!8.54e-18!71;UBERON:0001049!3.37e-17!52;UBERON:0005068!3.37e-17!52;UBERON:0006241!3.37e-17!52;UBERON:0007135!3.37e-17!52;UBERON:0000955!2.64e-16!50;UBERON:0006238!2.64e-16!50;UBERON:0002616!1.09e-15!49;UBERON:0004121!3.72e-15!102;UBERON:0000924!3.72e-15!102;UBERON:0006601!3.72e-15!102;UBERON:0001017!1.31e-14!73;UBERON:0005743!1.31e-14!73;UBERON:0003080!3.54e-14!40;UBERON:0000073!1.26e-13!75;UBERON:0001016!1.26e-13!75;UBERON:0002780!1.58e-13!39;UBERON:0001890!1.58e-13!39;UBERON:0006240!1.58e-13!39;UBERON:0000153!9.45e-13!94;UBERON:0007811!1.59e-12!86;UBERON:0002020!2.63e-12!34;UBERON:0002791!5.82e-10!29;UBERON:0003528!5.82e-10!29;UBERON:0001893!5.82e-10!29;UBERON:0000922!7.09e-09!328;UBERON:0000468!7.64e-09!333;UBERON:0000991!5.30e-07!18;UBERON:0005564!5.30e-07!18;UBERON:0000475!6.08e-07!200 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,2.49e-19,64;UBERON:0003075,2.49e-19,64;UBERON:0007284,2.49e-19,64;UBERON:0003056,2.42e-18,49;UBERON:0000073,3.25e-18,54;UBERON:0010371,2.42e-17,73;UBERON:0001049,3.36e-17,52;UBERON:0005068,3.36e-17,52;UBERON:0006241,3.36e-17,52;UBERON:0007135,3.36e-17,52;UBERON:0004121,6.21e-16,95;UBERON:0000924,6.21e-16,95;UBERON:0006601,6.21e-16,95;UBERON:0000955,5.68e-15,47;UBERON:0006238,5.68e-15,47;UBERON:0001017,1.30e-14,73;UBERON:0002616,2.29e-14,46;UBERON:0003080,3.53e-14,40;UBERON:0001016,1.25e-13,75;UBERON:0002780,1.58e-13,39;UBERON:0001890,1.58e-13,39;UBERON:0006240,1.58e-13,39;UBERON:0002020,2.62e-12,34;UBERON:0010314,1.03e-10,92;UBERON:0003528,5.81e-10,29;UBERON:0002791,5.81e-10,29;UBERON:0001893,5.81e-10,29;UBERON:0000922,2.73e-08,320;UBERON:0000991,5.29e-07,18;UBERON:0005564,5.29e-07,18 | |||
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| |||
|short_description=p2@Cnot10 | |||
}} |
Latest revision as of 07:02, 26 September 2015
Short description: | p2@Cnot10 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Cnot10_5end |
Coexpression cluster: | MCL_coexpression_mm9:463 |
Association with transcript: | 0bp_to_NM_153585, uc009rxq.2, uc009rxr.2, uc009rxs.2, uc009rxu.2, uc009rxv.2, uc009rxw.2, uc012hcc.1_5end |
EntrezGene: | Cnot10 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 7.28e-12 | 23 |
neuroblast (sensu Vertebrata) | 7.28e-12 | 23 |
neuron | 9.40e-08 | 33 |
neuronal stem cell | 9.40e-08 | 33 |
neuroblast | 9.40e-08 | 33 |
electrically signaling cell | 9.40e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 2.49e-19 | 64 |
neural plate | 2.49e-19 | 64 |
presumptive neural plate | 2.49e-19 | 64 |
pre-chordal neural plate | 2.42e-18 | 49 |
regional part of nervous system | 3.25e-18 | 54 |
ecto-epithelium | 2.42e-17 | 73 |
neural tube | 3.36e-17 | 52 |
neural rod | 3.36e-17 | 52 |
future spinal cord | 3.36e-17 | 52 |
neural keel | 3.36e-17 | 52 |
ectoderm-derived structure | 6.21e-16 | 95 |
ectoderm | 6.21e-16 | 95 |
presumptive ectoderm | 6.21e-16 | 95 |
brain | 5.68e-15 | 47 |
future brain | 5.68e-15 | 47 |
central nervous system | 1.30e-14 | 73 |
regional part of brain | 2.29e-14 | 46 |
anterior neural tube | 3.53e-14 | 40 |
nervous system | 1.25e-13 | 75 |
regional part of forebrain | 1.58e-13 | 39 |
forebrain | 1.58e-13 | 39 |
future forebrain | 1.58e-13 | 39 |
gray matter | 2.62e-12 | 34 |
structure with developmental contribution from neural crest | 1.03e-10 | 92 |
brain grey matter | 5.81e-10 | 29 |
regional part of telencephalon | 5.81e-10 | 29 |
telencephalon | 5.81e-10 | 29 |
embryo | 2.73e-08 | 320 |
gonad | 5.29e-07 | 18 |
gonad primordium | 5.29e-07 | 18 |