FFCP PHASE1:Mm9::chr9:110019834..110019857,-: Difference between revisions
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(Created page with "{{FFCP
|id=chr9:110019834..110019857,-
|short_description=p3@Dhx30
|description=CAGE_peak_3_at_Dhx30_5end
|association_with_transcript=-27bp_to_ENSMUST00000136969,uc009rtj...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=72831 | |EntrezGene=72831 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=482 | |||
|TSSclassifier=NA | |||
|UniProt=Q99PU8 | |UniProt=Q99PU8 | ||
|association_with_transcript=-27bp_to_ENSMUST00000136969,uc009rtj.1_5end | |||
|cluster_id=chr9:110019834..110019857,- | |||
|description=CAGE_peak_3_at_Dhx30_5end | |||
|id=chr9:110019834..110019857,- | |||
|ontology_enrichment_celltype=CL:0000117!9.77e-10!23;CL:0000337!9.77e-10!23;CL:0000540!2.09e-08!33;CL:0000047!2.09e-08!33;CL:0000031!2.09e-08!33;CL:0000404!2.09e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.86e-12,23;CL:0000337,9.86e-12,23;CL:0000540,9.29e-08,33;CL:0000047,9.29e-08,33;CL:0000031,9.29e-08,33;CL:0000404,9.29e-08,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!5.10e-20!94;UBERON:0007811!1.89e-16!86;UBERON:0003056!2.23e-13!49;UBERON:0001017!2.58e-13!73;UBERON:0005743!2.58e-13!73;UBERON:0000033!2.60e-13!63;UBERON:0001049!7.12e-13!52;UBERON:0005068!7.12e-13!52;UBERON:0006241!7.12e-13!52;UBERON:0007135!7.12e-13!52;UBERON:0000073!1.97e-12!75;UBERON:0001016!1.97e-12!75;UBERON:0002346!2.42e-12!71;UBERON:0003075!2.42e-12!71;UBERON:0007284!2.42e-12!71;UBERON:0003080!9.26e-12!40;UBERON:0002780!1.94e-11!39;UBERON:0001890!1.94e-11!39;UBERON:0006240!1.94e-11!39;UBERON:0000955!2.45e-11!50;UBERON:0006238!2.45e-11!50;UBERON:0002616!3.73e-11!49;UBERON:0004121!1.52e-10!102;UBERON:0000924!1.52e-10!102;UBERON:0006601!1.52e-10!102;UBERON:0002020!2.65e-10!34;UBERON:0002791!2.08e-08!29;UBERON:0003528!2.08e-08!29;UBERON:0001893!2.08e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002346,5.92e-13,64;UBERON:0003075,5.92e-13,64;UBERON:0007284,5.92e-13,64;UBERON:0003056,2.35e-12,49;UBERON:0000073,2.91e-12,54;UBERON:0001049,4.31e-12,52;UBERON:0005068,4.31e-12,52;UBERON:0006241,4.31e-12,52;UBERON:0007135,4.31e-12,52;UBERON:0003080,1.26e-11,40;UBERON:0002780,4.38e-11,39;UBERON:0001890,4.38e-11,39;UBERON:0006240,4.38e-11,39;UBERON:0010371,5.47e-11,73;UBERON:0001017,1.77e-10,73;UBERON:0002616,4.22e-10,46;UBERON:0000153,5.33e-10,43;UBERON:0001016,5.89e-10,75;UBERON:0000955,9.64e-10,47;UBERON:0006238,9.64e-10,47;UBERON:0004121,2.85e-09,95;UBERON:0000924,2.85e-09,95;UBERON:0006601,2.85e-09,95;UBERON:0002020,1.19e-08,34;UBERON:0002102,6.50e-07,7;UBERON:0004710,6.50e-07,7;UBERON:0005419,6.50e-07,7;UBERON:0005417,6.50e-07,7;UBERON:0005729,6.50e-07,7;UBERON:0010314,7.09e-07,92 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0,0.233612640595526,0.387369970324729,0,0.936258105287974,0.513653904676515,0.159544317990673,0.342401459862411,0.262261207256992,0,0,0,0.315462165358238,0.137114433605739,0,0.510259740906419,0.496454756004426,0.261199789138935,0,0,0,0,0,0,0,0.221730510655305,0,0.61506478758457,0,0,0.166234645358492,0,0,0,0,0,0,0,0.125896817975577,0,0.183546752161682,0.782391344348039,0,0.219686182734472,0.194429899074283,0.139986421625363,0,0.167782606057736,0,0,0,0,0,1.41621522601718,5.28990979272033,3.1691570175309,0,0,0,0,0,0.299600110518405,0.384218305321555,1.65903379693564,2.29510095163874,0.630974884054146,1.14260393761521,1.10434270475807,2.81728838194394,3.54628242767475,1.83843757322004,1.10115880999389,0.383062014255563,0.307213066512487,3.95658863190582,4.20843160571084,2.6045668527838,0.279182999001381,0.56276261003168,0.763991238884051,0.589257170947335,1.85083185038834,2.42319279572891,0,0.0755715601067855,0.869593466105033,0,0,0,0,0,0.421333260395256,0,0.259786004602869,0,1.12674735821344,0,0,0,0.216491041011214,0,0,0,0.258937883647172,0,0.346970653532272,0.304465478312141,0.230615497256059,0.301445281105245,0.117588707135705,0,0,0.433798070759735,0,0.323533699894818,0.441683036920787,0,1.86391761218122,0,0.41889341362691,0,0.11981512450592,0,0.254140454146129,1.04853447583376,0,8.54449594367478,0.695297280769106,0.511430914660661,1.24672826735736,1.1356888414743,0.509196819251581,0.124406970610093,0,0.210441855886474,1.30120442962704,0.459804208866946,1.44049703844279,1.35634336052144,1.56483948048054,0.384341160854549,0.468508622798644,0.517406741478031,1.94011193639558,2.64748512234947,2.46331573829528,1.97276159184817,1.94633074457919,1.39300866608867,0.61734640922383,1.19420560091096,0,0,0.284163499395593,0.621377317606506,0.938104239924385,0.180062061461015,0.23674473558521,0.196764231747404,0.154267112887378,0,0,0,0,0,0,0.146199987425332,0,0,0.420579897128254,1.13195073617213,0.330418782983798,0,0.853153002140936,0.464473343720877,0.902072229254653,0.201683524623343,0,0.570676878337677,0,0.164698954724011,0.251335208800269,0,0,0,0,0,0.379335801906163,0.685491075658373,2.25415471346161,0.814605311381257,0.193952487167626,0.631222379012867,0.442655759869801,0.147610147979602,0,0.370191491765402,0,0.667380422864376,0.393117990226406,0,0,0,0,0.287696137450811,0.162135226775035,0,0,0,0,0,0,0,0.184753190166605,1.32643988239339,0.162964976442026,0.169745085775188,0.469380496577004,0,0,0.390267295715598,0.472905432318573,0,0,0.163863314715738,0,0,0,0,0,0,0.642202359951168,1.05490517932983,0,0,0,0.390438744296638,1.29254038639679,0.477937595905104,0.445597348164788,0.283076530788832,0.404810701674894,0.292255857911312,0.395287777946524,0.642642632843614,0,0.890328018336276,0.325773918707152,1.15479086080775,0,0.728341908464944,0.302323556964751,0.565815239267694,0,0,0,0,0,0,0,0,0.680879211507576,1.62054984628179,2.8458910432206,1.28602221018955,1.95074257006501,1.24858172321449,1.31639216481697,0,0,0,0,0,0.161464426695906,0.180938774784468,0.119372344003136,0.164140899745061,0,0.370850604021019,0,0.206386867963223,0.185194527369712,0,0.136694227721025,0,0.339956859987711,0.139951452323658,0.414599921413271,0,1.89801596148681,0.406638934253697,0.432021363287205,0,0,0,0.0826534557253359,0,0,0.621339313086926,1.12738587736838,1.19613236835183,1.32366792365678,0.972255941720238,0.387479470433193,0.675824501963113,0.469428954583016,0.651021924219751,3.14578033277133,1.20792060413003,1.44015003128933,2.21207784439725,0,1.02710957164827,1.16928740680016,1.79026695667481,3.77494574084403,0.600977247599844,1.62458479892035,2.3222283488074,1.67654974641,2.11734988787365,1.8516997340553,1.92423683280659,1.75315353272353,0.226730383615211,0,0.0897138566094757,0,0.19318959403219,0.187682475451182,0.36630324853453,0.214368379079066,0,1.6942555278512,0.460325236507177,2.86447756719698,0.68741272937475,2.05524755931193,0.755393897389701,0.675022500231806,0.45032120322422,1.35942722695261,0.51776031175182,0.726511433089237,2.39414924040619,1.19513524027894,0.729320151204882,0.838452650511929,0.551530525350042,0.888986911206461,1.23621034343337,0.962757628775446,0,0,0.377252682772152,0.561849044819294,0.448176066834085,1.09127391015665,0.476293691283074,0.695305955669133,1.15745532278223,0.412085900803307,0.883193520806384,1.37147700954166,0.70990322463735,0.476872379894642,0.872078499793971,0.564656282491984,0.676916863133412,1.09756783723664,0.526139422875686,0.407412341537585,0,1.06771516311757,0.394017929502254,0.409231043169689,0.464810523557898,0.578719832943424,0.999242311751784,0.467863216890817,0.859484216193193,0.191288332068843,0.220591419119515,0 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| ||
|short_description=p3@Dhx30 | |||
}} | }} |
Latest revision as of 05:18, 26 September 2015
Short description: | p3@Dhx30 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Dhx30_5end |
Coexpression cluster: | MCL_coexpression_mm9:482 |
Association with transcript: | -27bp_to_ENSMUST00000136969, uc009rtj.1_5end |
EntrezGene: | Dhx30 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.86e-12 | 23 |
neuroblast (sensu Vertebrata) | 9.86e-12 | 23 |
neuron | 9.29e-08 | 33 |
neuronal stem cell | 9.29e-08 | 33 |
neuroblast | 9.29e-08 | 33 |
electrically signaling cell | 9.29e-08 | 33 |
Ontology term | p-value | n |
---|---|---|
neurectoderm | 5.92e-13 | 64 |
neural plate | 5.92e-13 | 64 |
presumptive neural plate | 5.92e-13 | 64 |
pre-chordal neural plate | 2.35e-12 | 49 |
regional part of nervous system | 2.91e-12 | 54 |
neural tube | 4.31e-12 | 52 |
neural rod | 4.31e-12 | 52 |
future spinal cord | 4.31e-12 | 52 |
neural keel | 4.31e-12 | 52 |
anterior neural tube | 1.26e-11 | 40 |
regional part of forebrain | 4.38e-11 | 39 |
forebrain | 4.38e-11 | 39 |
future forebrain | 4.38e-11 | 39 |
ecto-epithelium | 5.47e-11 | 73 |
central nervous system | 1.77e-10 | 73 |
regional part of brain | 4.22e-10 | 46 |
anterior region of body | 5.33e-10 | 43 |
nervous system | 5.89e-10 | 75 |
brain | 9.64e-10 | 47 |
future brain | 9.64e-10 | 47 |
ectoderm-derived structure | 2.85e-09 | 95 |
ectoderm | 2.85e-09 | 95 |
presumptive ectoderm | 2.85e-09 | 95 |
gray matter | 1.19e-08 | 34 |
forelimb | 6.50e-07 | 7 |
pectoral appendage | 6.50e-07 | 7 |
pectoral appendage bud | 6.50e-07 | 7 |
forelimb bud | 6.50e-07 | 7 |
forelimb/pectoral fin field | 6.50e-07 | 7 |
structure with developmental contribution from neural crest | 7.09e-07 | 92 |