FFCP PHASE1:Mm9::chr9:109834278..109834302,+: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr9:109834278..109834302,+ to FFCP PHASE1:Mm9::chr9:109834278..109834302,+: NSchange) |
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(7 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=17758 | |EntrezGene=17758 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=60 | |||
|TSSclassifier=NA | |||
|UniProt=P27546,Q78TF3 | |UniProt=P27546,Q78TF3 | ||
|association_with_transcript=0bp_to_NM_001205330,NM_001205331,NM_001205332,NM_008633,uc009rsy.2,uc009rsz.2,uc009rta.2,uc009rtb.2_5end | |||
|cluster_id=chr9:109834278..109834302,+ | |||
|description=CAGE_peak_6_at_Mtap4_5end | |||
|id=chr9:109834278..109834302,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.85e-13!23;CL:0000337!1.85e-13!23;CL:0000540!3.49e-09!33;CL:0000047!3.49e-09!33;CL:0000031!3.49e-09!33;CL:0000404!3.49e-09!33;CL:0002319!4.90e-08!43;CL:0000221!8.93e-08!44;CL:0000133!8.93e-08!44 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.56e-13,23;CL:0000337,1.56e-13,23;CL:0000540,3.13e-09,33;CL:0000047,3.13e-09,33;CL:0000031,3.13e-09,33;CL:0000404,3.13e-09,33;CL:0002319,4.46e-08,43;CL:0000221,8.18e-08,44;CL:0000133,8.18e-08,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!6.20e-21!73;UBERON:0005743!6.20e-21!73;UBERON:0001049!9.30e-21!52;UBERON:0005068!9.30e-21!52;UBERON:0006241!9.30e-21!52;UBERON:0007135!9.30e-21!52;UBERON:0000073!1.15e-20!75;UBERON:0001016!1.15e-20!75;UBERON:0000955!5.81e-20!50;UBERON:0006238!5.81e-20!50;UBERON:0000033!1.13e-19!63;UBERON:0002616!2.30e-19!49;UBERON:0000153!3.84e-18!94;UBERON:0007811!6.44e-18!86;UBERON:0002346!7.25e-18!71;UBERON:0003075!7.25e-18!71;UBERON:0007284!7.25e-18!71;UBERON:0003056!5.30e-17!49;UBERON:0002020!5.62e-17!34;UBERON:0004121!6.79e-17!102;UBERON:0000924!6.79e-17!102;UBERON:0006601!6.79e-17!102;UBERON:0003080!2.15e-15!40;UBERON:0002780!9.88e-15!39;UBERON:0001890!9.88e-15!39;UBERON:0006240!9.88e-15!39;UBERON:0002791!2.55e-14!29;UBERON:0003528!2.55e-14!29;UBERON:0001893!2.55e-14!29;UBERON:0000956!1.25e-09!21;UBERON:0001869!1.25e-09!21;UBERON:0000203!1.25e-09!21;UBERON:0002619!8.22e-08!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.60e-22,54;UBERON:0002346,2.47e-21,64;UBERON:0003075,2.47e-21,64;UBERON:0007284,2.47e-21,64;UBERON:0001017,4.71e-21,73;UBERON:0001049,7.08e-21,52;UBERON:0005068,7.08e-21,52;UBERON:0006241,7.08e-21,52;UBERON:0007135,7.08e-21,52;UBERON:0001016,8.79e-21,75;UBERON:0004121,2.14e-19,95;UBERON:0000924,2.14e-19,95;UBERON:0006601,2.14e-19,95;UBERON:0000955,5.18e-18,47;UBERON:0006238,5.18e-18,47;UBERON:0010371,9.38e-18,73;UBERON:0002616,1.99e-17,46;UBERON:0003056,4.26e-17,49;UBERON:0002020,4.51e-17,34;UBERON:0010314,3.79e-16,92;UBERON:0003080,1.77e-15,40;UBERON:0002780,8.20e-15,39;UBERON:0001890,8.20e-15,39;UBERON:0006240,8.20e-15,39;UBERON:0003528,2.13e-14,29;UBERON:0002791,2.13e-14,29;UBERON:0001893,2.13e-14,29;UBERON:0000956,1.11e-09,21;UBERON:0001869,1.11e-09,21;UBERON:0000203,1.11e-09,21;UBERON:0002619,7.52e-08,17 | |||
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| ||
|short_description=p6@Mtap4 | |||
}} | }} |
Latest revision as of 05:07, 26 September 2015
Short description: | p6@Mtap4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_6_at_Mtap4_5end |
Coexpression cluster: | MCL_coexpression_mm9:60 |
Association with transcript: | 0bp_to_NM_001205330, NM_001205331, NM_001205332, NM_008633, uc009rsy.2, uc009rsz.2, uc009rta.2, uc009rtb.2_5end |
EntrezGene: | Mtap4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.56e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.56e-13 | 23 |
neuron | 3.13e-09 | 33 |
neuronal stem cell | 3.13e-09 | 33 |
neuroblast | 3.13e-09 | 33 |
electrically signaling cell | 3.13e-09 | 33 |
neural cell | 4.46e-08 | 43 |
ectodermal cell | 8.18e-08 | 44 |
neurectodermal cell | 8.18e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.60e-22 | 54 |
neurectoderm | 2.47e-21 | 64 |
neural plate | 2.47e-21 | 64 |
presumptive neural plate | 2.47e-21 | 64 |
central nervous system | 4.71e-21 | 73 |
neural tube | 7.08e-21 | 52 |
neural rod | 7.08e-21 | 52 |
future spinal cord | 7.08e-21 | 52 |
neural keel | 7.08e-21 | 52 |
nervous system | 8.79e-21 | 75 |
ectoderm-derived structure | 2.14e-19 | 95 |
ectoderm | 2.14e-19 | 95 |
presumptive ectoderm | 2.14e-19 | 95 |
brain | 5.18e-18 | 47 |
future brain | 5.18e-18 | 47 |
ecto-epithelium | 9.38e-18 | 73 |
regional part of brain | 1.99e-17 | 46 |
pre-chordal neural plate | 4.26e-17 | 49 |
gray matter | 4.51e-17 | 34 |
structure with developmental contribution from neural crest | 3.79e-16 | 92 |
anterior neural tube | 1.77e-15 | 40 |
regional part of forebrain | 8.20e-15 | 39 |
forebrain | 8.20e-15 | 39 |
future forebrain | 8.20e-15 | 39 |
brain grey matter | 2.13e-14 | 29 |
regional part of telencephalon | 2.13e-14 | 29 |
telencephalon | 2.13e-14 | 29 |
cerebral cortex | 1.11e-09 | 21 |
cerebral hemisphere | 1.11e-09 | 21 |
pallium | 1.11e-09 | 21 |
regional part of cerebral cortex | 7.52e-08 | 17 |