FFCP PHASE1:Mm9::chr14:58042891..58042930,+: Difference between revisions
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{{FFCP|EntrezGene=21821|HGNC=|MCL_coexpression_id=463|UniProt=Q61371,G3X9Z7,D6RJ41,Q3TUP2|association_with_transcript=0bp_to_ENSMUST00000039020,ENSMUST00000122063,ENSMUST00000150296,NM_009376,uc007udb.2_5end|description=CAGE_peak_1_at_Ift88_5end|id=chr14:58042891..58042930,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.15e-14!63;UBERON:0003056!2.25e-12!49;UBERON:0000153!3.34e-12!94;UBERON:0000955!1.93e-11!50;UBERON:0006238!1.93e-11!50;UBERON:0002616!6.10e-11!49;UBERON:0001049!1.26e-10!52;UBERON:0005068!1.26e-10!52;UBERON:0006241!1.26e-10!52;UBERON:0007135!1.26e-10!52;UBERON:0002346!3.49e-10!71;UBERON:0003075!3.49e-10!71;UBERON:0007284!3.49e-10!71;UBERON:0007811!3.93e-10!86;UBERON:0004121!9.86e-10!102;UBERON:0000924!9.86e-10!102;UBERON:0006601!9.86e-10!102;UBERON:0003080!1.01e-09!40;UBERON:0002780!3.25e-09!39;UBERON:0001890!3.25e-09!39;UBERON:0006240!3.25e-09!39;UBERON:0001017!1.73e-08!73;UBERON:0005743!1.73e-08!73;UBERON:0000468!2.12e-08!333;UBERON:0000073!4.68e-08!75;UBERON:0001016!4.68e-08!75;UBERON:0000475!2.57e-07!200;UBERON:0002020!3.33e-07!34;UBERON:0000922!5.22e-07!328;UBERON:0002021!5.32e-07!10;UBERON:0000411!5.32e-07!10;UBERON:0001950!5.32e-07!10;UBERON:0002791!9.45e-07!29;UBERON:0003528!9.45e-07!29;UBERON:0001893!9.45e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0010371,9.78e-13,73;UBERON:0003056,2.25e-12,49;UBERON:0002346,6.58e-12,64;UBERON:0003075,6.58e-12,64;UBERON:0007284,6.58e-12,64;UBERON:0000073,1.82e-11,54;UBERON:0004121,6.06e-11,95;UBERON:0000924,6.06e-11,95;UBERON:0006601,6.06e-11,95;UBERON:0001049,1.26e-10,52;UBERON:0005068,1.26e-10,52;UBERON:0006241,1.26e-10,52;UBERON:0007135,1.26e-10,52;UBERON:0000955,2.74e-10,47;UBERON:0006238,2.74e-10,47;UBERON:0002616,8.37e-10,46;UBERON:0003080,1.01e-09,40;UBERON:0002780,3.24e-09,39;UBERON:0001890,3.24e-09,39;UBERON:0006240,3.24e-09,39;UBERON:0001017,1.73e-08,73;UBERON:0001016,4.68e-08,75;UBERON:0002020,3.33e-07,34;UBERON:0002021,5.32e-07,10;UBERON:0000411,5.32e-07,10;UBERON:0001950,5.32e-07,10;UBERON:0003528,9.45e-07,29;UBERON:0002791,9.45e-07,29;UBERON:0001893,9.45e-07,29|phase1_expression=12.8119077683835,5.23463111459042,2.72999543633722,3.0246421130683,0,3.86122325397347,6.07392865548367,2.7115897922731,0.563154888606667,0.936258105287974,1.54096171402954,0.957265907944037,3.59521532855532,2.44777126773193,2.33176833270964,2.42970320867791,2.79824751251259,5.99378114180652,4.2505474417779,3.81950686618227,22.8766450506378,4.86525660884338,3.6567970479451,3.19984845586813,2.75291137280604,3.44539178469012,1.7230479846363,2.58565479223067,3.6104449696711,3.2763916868791,3.99114919179548,5.08024538767705,2.46025915033828,0,9.53210345179206,7.97926297720763,6.12508068787107,2.09265815368454,0.7813353445238,1.57057123192139,0.588231488031014,0,0.485510353031154,9.06457089424156,11.1514624341466,9.54443111240744,1.56478268869608,2.8343270329458,1.75748946187577,4.47188767870852,2.93971485413261,1.43752564364972,3.02008690903925,2.17608642603403,3.6970317905671,2.57259436035947,9.16907007804022,4.12537673821954,10.9250888864183,13.7537654610729,15.2119536841483,2.37191172448392,2.66788438833342,0,0.988866362566974,1.4209602298922,2.09720077362883,2.30530983192933,7.98410014775278,7.69533848490637,6.09942387919008,6.85562362569129,5.30084498283872,10.534208732486,6.80502844229478,6.43453150627015,13.2139057199266,14.4286692036262,12.595735727012,13.8480602116704,11.8019060247108,11.9810075228055,10.8881369610539,10.1297269805702,13.1406493088057,13.5529149317887,14.5219114415085,15.4711540034999,4.7707501799906,8.01058537131927,8.69593466105033,2.58127163094416,4.0798280022465,3.77792234146472,6.49776417447669,6.72040330646003,6.88177658645584,9.37366774179318,6.23486411046885,7.42013106471715,11.2674735821344,16.6824420638613,25.4805239706646,0,8.87613268145978,7.34743609877786,6.0662933401774,6.96521666286266,9.06282592765101,10.2425075954729,6.41895709034703,4.26251669636998,4.84292544237723,6.63179618431539,8.46638691377075,6.40899615781345,7.41584903203122,7.22996784599558,7.07688441559899,6.95597454773859,3.75430581382669,2.42437626567611,5.59175283654366,15.8101630386235,14.6612694769419,4.08731288333746,2.51611761462433,2.99951365496704,4.70159840170339,16.4769703345305,10.980014467647,15.0785222535437,19.9897968221118,19.4343747571051,14.7529511637288,14.6017136760982,9.67473956578005,6.22034853050465,13.1415834385511,11.995185785529,10.6698763229417,8.04657365517155,12.4242869565691,14.1662528765572,11.9063873514824,14.8611915530426,11.2442069471675,20.1788629176432,10.3472636607764,16.8304411349359,17.4191612922309,10.9597866213787,12.7901734643775,11.1440693287093,9.4659782747654,12.7381930763836,2.80885274925294,3.3455227924913,4.83077948972507,5.38527008592305,7.27030785941398,6.48223421259654,4.26140524053378,4.32881309844288,6.47921874126989,5.11574678450897,5.90201483079162,6.42209383019432,5.5950348970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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=21821 | |||
|HGNC= | |||
|MCL_coexpression_id=463 | |||
|TSSclassifier=NA | |||
|UniProt=Q61371,G3X9Z7,D6RJ41,Q3TUP2 | |||
|association_with_transcript=0bp_to_ENSMUST00000039020,ENSMUST00000122063,ENSMUST00000150296,NM_009376,uc007udb.2_5end | |||
|cluster_id=chr14:58042891..58042930,+ | |||
|description=CAGE_peak_1_at_Ift88_5end | |||
|id=chr14:58042891..58042930,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.15e-14!63;UBERON:0003056!2.25e-12!49;UBERON:0000153!3.34e-12!94;UBERON:0000955!1.93e-11!50;UBERON:0006238!1.93e-11!50;UBERON:0002616!6.10e-11!49;UBERON:0001049!1.26e-10!52;UBERON:0005068!1.26e-10!52;UBERON:0006241!1.26e-10!52;UBERON:0007135!1.26e-10!52;UBERON:0002346!3.49e-10!71;UBERON:0003075!3.49e-10!71;UBERON:0007284!3.49e-10!71;UBERON:0007811!3.93e-10!86;UBERON:0004121!9.86e-10!102;UBERON:0000924!9.86e-10!102;UBERON:0006601!9.86e-10!102;UBERON:0003080!1.01e-09!40;UBERON:0002780!3.25e-09!39;UBERON:0001890!3.25e-09!39;UBERON:0006240!3.25e-09!39;UBERON:0001017!1.73e-08!73;UBERON:0005743!1.73e-08!73;UBERON:0000468!2.12e-08!333;UBERON:0000073!4.68e-08!75;UBERON:0001016!4.68e-08!75;UBERON:0000475!2.57e-07!200;UBERON:0002020!3.33e-07!34;UBERON:0000922!5.22e-07!328;UBERON:0002021!5.32e-07!10;UBERON:0000411!5.32e-07!10;UBERON:0001950!5.32e-07!10;UBERON:0002791!9.45e-07!29;UBERON:0003528!9.45e-07!29;UBERON:0001893!9.45e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,9.78e-13,73;UBERON:0003056,2.25e-12,49;UBERON:0002346,6.58e-12,64;UBERON:0003075,6.58e-12,64;UBERON:0007284,6.58e-12,64;UBERON:0000073,1.82e-11,54;UBERON:0004121,6.06e-11,95;UBERON:0000924,6.06e-11,95;UBERON:0006601,6.06e-11,95;UBERON:0001049,1.26e-10,52;UBERON:0005068,1.26e-10,52;UBERON:0006241,1.26e-10,52;UBERON:0007135,1.26e-10,52;UBERON:0000955,2.74e-10,47;UBERON:0006238,2.74e-10,47;UBERON:0002616,8.37e-10,46;UBERON:0003080,1.01e-09,40;UBERON:0002780,3.24e-09,39;UBERON:0001890,3.24e-09,39;UBERON:0006240,3.24e-09,39;UBERON:0001017,1.73e-08,73;UBERON:0001016,4.68e-08,75;UBERON:0002020,3.33e-07,34;UBERON:0002021,5.32e-07,10;UBERON:0000411,5.32e-07,10;UBERON:0001950,5.32e-07,10;UBERON:0003528,9.45e-07,29;UBERON:0002791,9.45e-07,29;UBERON:0001893,9.45e-07,29 | |||
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| |||
|short_description=p1@Ift88 | |||
}} |
Latest revision as of 04:26, 26 September 2015
Short description: | p1@Ift88 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ift88_5end |
Coexpression cluster: | MCL_coexpression_mm9:463 |
Association with transcript: | 0bp_to_ENSMUST00000039020, ENSMUST00000122063, ENSMUST00000150296, NM_009376, uc007udb.2_5end |
EntrezGene: | Ift88 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 9.78e-13 | 73 |
pre-chordal neural plate | 2.25e-12 | 49 |
neurectoderm | 6.58e-12 | 64 |
neural plate | 6.58e-12 | 64 |
presumptive neural plate | 6.58e-12 | 64 |
regional part of nervous system | 1.82e-11 | 54 |
ectoderm-derived structure | 6.06e-11 | 95 |
ectoderm | 6.06e-11 | 95 |
presumptive ectoderm | 6.06e-11 | 95 |
neural tube | 1.26e-10 | 52 |
neural rod | 1.26e-10 | 52 |
future spinal cord | 1.26e-10 | 52 |
neural keel | 1.26e-10 | 52 |
brain | 2.74e-10 | 47 |
future brain | 2.74e-10 | 47 |
regional part of brain | 8.37e-10 | 46 |
anterior neural tube | 1.01e-09 | 40 |
regional part of forebrain | 3.24e-09 | 39 |
forebrain | 3.24e-09 | 39 |
future forebrain | 3.24e-09 | 39 |
central nervous system | 1.73e-08 | 73 |
nervous system | 4.68e-08 | 75 |
gray matter | 3.33e-07 | 34 |
occipital lobe | 5.32e-07 | 10 |
visual cortex | 5.32e-07 | 10 |
neocortex | 5.32e-07 | 10 |
brain grey matter | 9.45e-07 | 29 |
regional part of telencephalon | 9.45e-07 | 29 |
telencephalon | 9.45e-07 | 29 |