FFCP PHASE1:Mm9::chr7:148380946..148380982,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr7:148380946..148380982,+
|short_description=p3@Lrrc56
|description=CAGE_peak_3_at_Lrrc56_5end
|association_with_transcript=0bp_to_ENSMUST00000047093_5end
|E...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=70552 | |EntrezGene=70552 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K375 | |UniProt=Q8K375 | ||
|association_with_transcript=0bp_to_ENSMUST00000047093_5end | |||
|cluster_id=chr7:148380946..148380982,+ | |||
|description=CAGE_peak_3_at_Lrrc56_5end | |||
|id=chr7:148380946..148380982,+ | |||
|ontology_enrichment_celltype=CL:0000221!1.37e-08!44;CL:0000133!1.37e-08!44;CL:0002319!1.59e-08!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,3.19e-11,43;CL:0000221,7.44e-11,44;CL:0000133,7.44e-11,44;CL:0002453,8.01e-11,8;CL:0000333,2.07e-08,10;CL:0000095,2.07e-08,10;CL:0000243,2.07e-08,10;CL:0000123,2.07e-08,10;CL:0000125,2.07e-08,10;CL:0000030,2.07e-08,10;CL:0000339,2.07e-08,10;CL:0000117,6.68e-08,23;CL:0000337,6.68e-08,23;CL:0002609,7.37e-08,6;CL:0000128,1.63e-07,6;CL:0000126,1.63e-07,6;CL:0000127,1.63e-07,6 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon= | |||
|ontology_enrichment_uberon_v019_2=UBERON:0003056,5.34e-14,49;UBERON:0001017,4.73e-13,73;UBERON:0001016,1.65e-12,75;UBERON:0002780,2.36e-12,39;UBERON:0001890,2.36e-12,39;UBERON:0006240,2.36e-12,39;UBERON:0004121,3.95e-12,95;UBERON:0000924,3.95e-12,95;UBERON:0006601,3.95e-12,95;UBERON:0003080,6.39e-12,40;UBERON:0002616,3.86e-11,46;UBERON:0000955,8.57e-11,47;UBERON:0006238,8.57e-11,47;UBERON:0002346,1.59e-10,64;UBERON:0003075,1.59e-10,64;UBERON:0007284,1.59e-10,64;UBERON:0000007,5.68e-10,8;UBERON:0003296,5.68e-10,8;UBERON:0010133,5.68e-10,8;UBERON:0001049,2.87e-09,52;UBERON:0005068,2.87e-09,52;UBERON:0006241,2.87e-09,52;UBERON:0007135,2.87e-09,52;UBERON:0000073,9.69e-09,54;UBERON:0010371,1.74e-08,73;UBERON:0001894,9.44e-08,10;UBERON:0006222,9.44e-08,10;UBERON:0003528,9.46e-07,29;UBERON:0002791,9.46e-07,29;UBERON:0001893,9.46e-07,29 | |||
|phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404950534779652,0,0,0,0,12.161190491603,0.198581902401771,0.261199789138935,0.319984845586813,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70642765846759,1.97717564461025,1.1665793944457,1.39986421625363,2.87505128729943,0,0,0,0,0.286533439938757,0,2.42779753031517,2.11596391708813,2.53532561402472,0,0,0,0,0,2.09720077362883,8.06858441175265,2.69592992002042,3.51015439662396,1.89292465216244,0.856952953211411,0,1.83736198822431,2.01275489138296,0,0,0.127687338085188,0.153606533256243,3.56092976871523,2.8361169516747,1.56274011167028,0,0,0.45839474333043,0.883885756421003,0.569486723196412,0.931997229126503,0,0.302286240427142,0.289864488701678,0,0,0,0,0,1.26399978118577,0,0,0,0.281686839553361,0,0,0,0,0,0,2.39786147410026,0,0.29688427812965,0.867426633830679,0.608930956624282,0.230615497256059,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0.299581278809645,0,2.51308704225729,0,0,0.20778804455956,0.486723789203273,0.509196819251581,0,0,0,1.43132487258974,0.689706313300419,2.70093194708024,1.35634336052144,1.90502197623718,0.896796041993948,0.749613796477831,0.258703370739016,1.72454394346274,1.51284864134255,0.175951124163949,0.876782929710299,0.556094498451196,0,0.823128545631774,0.796137067273973,0,0,0,0.207125772535502,0.703578179943289,0.36012412292203,0,0.590292695242212,0,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0,0,2.05809224758569,0,0,1.06644125267617,0.928946687441754,0.128867461322093,0.201683524623343,0.444756087689741,0.190225626112559,0,0.164698954724011,0.251335208800269,0.397912944082302,0,0,0,0,1.32767530667157,0.571242563048644,1.1270773567308,0.203651327845314,1.16371492300575,0.420814919341911,0.316182685621286,0.147610147979602,0.784993639206874,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0.184753190166605,0.37898282354097,0.651859905768103,1.01847051465113,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0.221464689648775,0,0,0.172684981865896,0.289298117163023,0,0,0,0,0,0.117211686592203,0.327869890753351,0,0.315508219416257,0.390438744296638,0.215423397732799,0.716906393857656,0,0.283076530788832,1.21443210502468,0.292255857911312,0,0,0.141940085208269,1.24645922567079,0.162886959353576,0.494910368917606,0,0.728341908464944,0.302323556964751,0,0,0.307435147943927,0,0.363533729477506,0.356497378384721,0,0,0,3.74483566329167,1.62054984628179,1.94038025674132,1.07168517515796,2.30542303734956,1.78368817602071,1.15184314421485,0.913394847343798,0,0,0,0,0,0.0603129249281559,0.119372344003136,0,0,0.18542530201051,0,0,0.185194527369712,0,0.136694227721025,0.457556346413045,0,0,0.138199973804424,0,1.89801596148681,0.609958401380546,0.108005340821801,0.209088296014469,0.218362563746178,0.539457385539283,0.247960367176008,0,0,0,93.5730278215756,0.747582730219894,0.330916980914195,0.583353565032143,0.516639293910924,0.506868376472335,1.05621514781179,0.2604087696879,0.314578033277133,10.8712854371703,39.1720808510697,0.316011120628178,0.202725215290164,0.308132871494482,0.25984164595559,0.179026695667481,0.198681354781265,0,0,0.100966449948148,0,0,0,0.288635524920988,0,0,0.443971906748129,0,0,0,0,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,1.55681021376265,1.59609949360412,1.70733605754134,0.972426868273176,0.419226325255965,0.367687016900028,0.222246727801615,0.412070114477788,0.320919209591815,0.505394423527595,0.50695859978048,0,0.37456602987953,0.640251524048693,0.402048282689293,0,0.115884325944855,0.192909220463705,0,0.294397840268795,0,1.24233064311536,0.476872379894642,0.145346416632329,0.470546902076653,0.338458431566706,0.73171189149109,0.526139422875686,0.679020569229309,0.561142271657738,0.474540072496697,0.492522411877817,0.409231043169689,0,0.192906610981141,0.749431733813838,0.935726433781634,0.214871054048298,0,0.220591419119515,0.231867835620421 | |phase1_expression=0.480446541314382,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.404950534779652,0,0,0,0,12.161190491603,0.198581902401771,0.261199789138935,0.319984845586813,0.22940928106717,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.70642765846759,1.97717564461025,1.1665793944457,1.39986421625363,2.87505128729943,0,0,0,0,0.286533439938757,0,2.42779753031517,2.11596391708813,2.53532561402472,0,0,0,0,0,2.09720077362883,8.06858441175265,2.69592992002042,3.51015439662396,1.89292465216244,0.856952953211411,0,1.83736198822431,2.01275489138296,0,0,0.127687338085188,0.153606533256243,3.56092976871523,2.8361169516747,1.56274011167028,0,0,0.45839474333043,0.883885756421003,0.569486723196412,0.931997229126503,0,0.302286240427142,0.289864488701678,0,0,0,0,0,1.26399978118577,0,0,0,0.281686839553361,0,0,0,0,0,0,2.39786147410026,0,0.29688427812965,0.867426633830679,0.608930956624282,0.230615497256059,0.150722640552623,0.117588707135705,0,0,0,0,0,0,0,0,0,0,0,0.11981512450592,0,0,0.299581278809645,0,2.51308704225729,0,0,0.20778804455956,0.486723789203273,0.509196819251581,0,0,0,1.43132487258974,0.689706313300419,2.70093194708024,1.35634336052144,1.90502197623718,0.896796041993948,0.749613796477831,0.258703370739016,1.72454394346274,1.51284864134255,0.175951124163949,0.876782929710299,0.556094498451196,0,0.823128545631774,0.796137067273973,0,0,0,0.207125772535502,0.703578179943289,0.36012412292203,0,0.590292695242212,0,0,0.268273401399619,0.116765342367169,0,0,0,0,0,0,0,2.05809224758569,0,0,1.06644125267617,0.928946687441754,0.128867461322093,0.201683524623343,0.444756087689741,0.190225626112559,0,0.164698954724011,0.251335208800269,0.397912944082302,0,0,0,0,1.32767530667157,0.571242563048644,1.1270773567308,0.203651327845314,1.16371492300575,0.420814919341911,0.316182685621286,0.147610147979602,0.784993639206874,0,0,0.333690211432188,0.196558995113203,0,0,0,0,0,0,0,0,0.372140947668503,0,0,0,0,0.184753190166605,0.37898282354097,0.651859905768103,1.01847051465113,0.234690248288502,0.167506257441816,0.238043640886014,0.195133647857799,0.157635144106191,0.221464689648775,0,0,0.172684981865896,0.289298117163023,0,0,0,0,0,0.117211686592203,0.327869890753351,0,0.315508219416257,0.390438744296638,0.215423397732799,0.716906393857656,0,0.283076530788832,1.21443210502468,0.292255857911312,0,0,0.141940085208269,1.24645922567079,0.162886959353576,0.494910368917606,0,0.728341908464944,0.302323556964751,0,0,0.307435147943927,0,0.363533729477506,0.356497378384721,0,0,0,3.74483566329167,1.62054984628179,1.94038025674132,1.07168517515796,2.30542303734956,1.78368817602071,1.15184314421485,0.913394847343798,0,0,0,0,0,0.0603129249281559,0.119372344003136,0,0,0.18542530201051,0,0,0.185194527369712,0,0.136694227721025,0.457556346413045,0,0,0.138199973804424,0,1.89801596148681,0.609958401380546,0.108005340821801,0.209088296014469,0.218362563746178,0.539457385539283,0.247960367176008,0,0,0,93.5730278215756,0.747582730219894,0.330916980914195,0.583353565032143,0.516639293910924,0.506868376472335,1.05621514781179,0.2604087696879,0.314578033277133,10.8712854371703,39.1720808510697,0.316011120628178,0.202725215290164,0.308132871494482,0.25984164595559,0.179026695667481,0.198681354781265,0,0,0.100966449948148,0,0,0,0.288635524920988,0,0,0.443971906748129,0,0,0,0,0.183151624267265,0.214368379079066,0,0,0,0,0,0,0,0,0,0,0,1.55681021376265,1.59609949360412,1.70733605754134,0.972426868273176,0.419226325255965,0.367687016900028,0.222246727801615,0.412070114477788,0.320919209591815,0.505394423527595,0.50695859978048,0,0.37456602987953,0.640251524048693,0.402048282689293,0,0.115884325944855,0.192909220463705,0,0.294397840268795,0,1.24233064311536,0.476872379894642,0.145346416632329,0.470546902076653,0.338458431566706,0.73171189149109,0.526139422875686,0.679020569229309,0.561142271657738,0.474540072496697,0.492522411877817,0.409231043169689,0,0.192906610981141,0.749431733813838,0.935726433781634,0.214871054048298,0,0.220591419119515,0.231867835620421 | ||
|short_description=p3@Lrrc56 | |||
}} | }} |
Latest revision as of 03:36, 26 September 2015
Short description: | p3@Lrrc56 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Lrrc56_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000047093_5end |
EntrezGene: | Lrrc56 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 3.19e-11 | 43 |
ectodermal cell | 7.44e-11 | 44 |
neurectodermal cell | 7.44e-11 | 44 |
oligodendrocyte precursor cell | 8.01e-11 | 8 |
migratory neural crest cell | 2.07e-08 | 10 |
neuron associated cell | 2.07e-08 | 10 |
glial cell (sensu Vertebrata) | 2.07e-08 | 10 |
neuron associated cell (sensu Vertebrata) | 2.07e-08 | 10 |
glial cell | 2.07e-08 | 10 |
glioblast | 2.07e-08 | 10 |
glioblast (sensu Vertebrata) | 2.07e-08 | 10 |
CNS neuron (sensu Vertebrata) | 6.68e-08 | 23 |
neuroblast (sensu Vertebrata) | 6.68e-08 | 23 |
neuron of cerebral cortex | 7.37e-08 | 6 |
oligodendrocyte | 1.63e-07 | 6 |
macroglial cell | 1.63e-07 | 6 |
astrocyte | 1.63e-07 | 6 |
Ontology term | p-value | n |
---|---|---|
pre-chordal neural plate | 5.34e-14 | 49 |
central nervous system | 4.73e-13 | 73 |
nervous system | 1.65e-12 | 75 |
regional part of forebrain | 2.36e-12 | 39 |
forebrain | 2.36e-12 | 39 |
future forebrain | 2.36e-12 | 39 |
ectoderm-derived structure | 3.95e-12 | 95 |
ectoderm | 3.95e-12 | 95 |
presumptive ectoderm | 3.95e-12 | 95 |
anterior neural tube | 6.39e-12 | 40 |
regional part of brain | 3.86e-11 | 46 |
brain | 8.57e-11 | 47 |
future brain | 8.57e-11 | 47 |
neurectoderm | 1.59e-10 | 64 |
neural plate | 1.59e-10 | 64 |
presumptive neural plate | 1.59e-10 | 64 |
pituitary gland | 5.68e-10 | 8 |
gland of diencephalon | 5.68e-10 | 8 |
neuroendocrine gland | 5.68e-10 | 8 |
neural tube | 2.87e-09 | 52 |
neural rod | 2.87e-09 | 52 |
future spinal cord | 2.87e-09 | 52 |
neural keel | 2.87e-09 | 52 |
regional part of nervous system | 9.69e-09 | 54 |
ecto-epithelium | 1.74e-08 | 73 |
diencephalon | 9.44e-08 | 10 |
future diencephalon | 9.44e-08 | 10 |
brain grey matter | 9.46e-07 | 29 |
regional part of telencephalon | 9.46e-07 | 29 |
telencephalon | 9.46e-07 | 29 |