FFCP PHASE1:Mm9::chr7:148380021..148380039,+: Difference between revisions
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{{FFCP|EntrezGene=70552|HGNC=|MCL_coexpression_id=0|UniProt=Q8BMW2,Q8K375|association_with_transcript=0bp_to_NM_001172064,NM_001172065,uc009kjx.2,uc012fwq.1_5end|description=CAGE_peak_4_at_Lrrc56_5end|id=chr7:148380021..148380039,+|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004121!1.40e-09!102;UBERON:0000924!1.40e-09!102;UBERON:0006601!1.40e-09!102;UBERON:0004111!3.63e-09!122;UBERON:0001049!3.84e-09!52;UBERON:0005068!3.84e-09!52;UBERON:0006241!3.84e-09!52;UBERON:0007135!3.84e-09!52;UBERON:0000033!6.08e-09!63;UBERON:0002346!1.19e-08!71;UBERON:0003075!1.19e-08!71;UBERON:0007284!1.19e-08!71;UBERON:0000073!1.87e-08!75;UBERON:0001016!1.87e-08!75;UBERON:0001017!2.28e-08!73;UBERON:0005743!2.28e-08!73;UBERON:0002616!9.32e-08!49;UBERON:0000955!1.98e-07!50;UBERON:0006238!1.98e-07!50;UBERON:0000025!3.35e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.48e-08,122;UBERON:0004121,1.50e-08,95;UBERON:0000924,1.50e-08,95;UBERON:0006601,1.50e-08,95;UBERON:0010314,5.87e-08,92;UBERON:0001017,7.89e-08,73;UBERON:0000073,8.94e-08,54;UBERON:0002346,1.19e-07,64;UBERON:0003075,1.19e-07,64;UBERON:0007284,1.19e-07,64;UBERON:0001016,2.00e-07,75;UBERON:0001049,2.07e-07,52;UBERON:0005068,2.07e-07,52;UBERON:0006241,2.07e-07,52;UBERON:0007135,2.07e-07,52;UBERON:0000025,3.09e-07,114|phase1_expression=0.80074423552397,1.04692622291808,0.909998478779072,1.20985684522732,0.500895729946347,0.671517087647559,0,0,0,0.234064526321993,0,0,0,0,0,0.404950534779652,0,0.157731082679119,0.137114433605739,0,6.4632900514813,0.297872853602656,0.261199789138935,0.319984845586813,0.22940928106717,0.57423196411502,0,0.861884930743556,0.760093677825496,0.756090389279792,0.443461021310609,0,0,0,0.288851619751275,0.332469290716985,1.02084678131185,0.837063261473815,1.5626706890476,0.523523743973798,0.588231488031014,0,0.485510353031154,0.755380907853464,0.506884656097573,0,1.56478268869608,0.872100625521786,0.439372365468944,1.1665793944457,0.839918529752175,2.87505128729943,0.167782606057736,0,0,0.514518872071894,1.43266719969378,0,0.606949382578793,0,1.90149421051854,0.338844532069132,0,0.899899717281399,0.988866362566974,0,1.19840044207362,3.07374644257244,0.311068836925433,0.540023753326763,1.47227472945967,0.571301968807607,1.98781686856452,0.244981598429908,0.958454710182364,0.919218786610021,0,1.40456071893706,1.22885226604995,0.791317726381163,1.37231465403614,0.52091337055676,3.07101298901519,0.56276261003168,1.22238598221448,1.76777151284201,0.711858403995515,0.745597783301202,0.454357159999104,0.906858721281426,0.289864488701678,0,0,1.07940638327563,0,1.34408066129201,0.842666520790511,0.511290967734173,0.519572009205738,0.70667914902068,1.26759077799012,0,2.54805239706646,0,0.216491041011214,0.253359865475099,0,0.34255163915718,0.517875767294343,0.890652834388949,0.346970653532272,0.304465478312141,1.15307748628029,0.904335843315735,0.940709657085638,0.502666365318702,1.48316980640624,1.59059292611903,0,0.970601099684455,0.441683036920787,0.969750506270444,0,1.17112318804619,1.8850203613211,1.02182822083437,0.239630249011841,0.599902730993408,0.254140454146129,0.898743836428936,1.83000241127451,0.502617408451458,1.04294592115366,1.79000820131231,1.66230435647648,0.648965052271031,1.01839363850316,0.622034853050465,1.51633655060205,1.05220927943237,0.260240885925407,1.14951052216736,0.180062129805349,0.753524089178575,0.612328492361951,0.512454881139399,1.03071897015702,1.55222022443409,0.215567992932842,0.189106080167819,0.879755620819744,0,0.556094498451196,0.696504333044333,0.411564272815887,0.199034266818493,0,0,0.284163499395593,0.207125772535502,0.234526059981096,0.180062061461015,0.473489471170421,0.590292695242212,0,0.930135779001631,0.804820204198858,1.40118410840603,0.658239399653922,1.31333971263276,1.13496333364198,0.438599962275997,0.439100230582101,1.34206418760372,0.210289948564127,0.617427674275707,0.991256348951394,0.264450566663544,0.213288250535234,0.464473343720877,0.38660238396628,0.605050573870028,0.889512175379481,0.190225626112559,0.474529061544512,0.494096864172033,0.754005626400808,0.795825888164603,1.16978452271472,0.898819408654221,0.216138049874694,0.199141273254367,0.379335801906163,0.342745537829186,0,0,0.775809948670503,0.631222379012867,0.505892296994058,0.738050739898011,0.941992367048249,0.616985819609003,0.592905254174298,0.166845105716094,0.393117990226406,0.449724224769707,0.405720242777006,0.72353147925725,0.25462585178142,0.575392274901621,0.162135226775035,0.274561413188081,1.43768206527355,1.11642284300551,1.5601883655728,0.757736633841335,0.538192240565737,0.482443521363367,1.10851914099963,0.568474235311454,0.488894929326078,0.509235257325564,0.704070744865506,0.670025029767263,1.42826184531608,0.195133647857799,0,1.10732344824387,0.637819074629948,0.491589944147214,0.345369963731791,0.289298117163023,0,0.54390568381871,0,0.827810238914197,0.963303539926752,1.05490517932983,0.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=70552 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q8BMW2,Q8K375 | |||
|association_with_transcript=0bp_to_NM_001172064,NM_001172065,uc009kjx.2,uc012fwq.1_5end | |||
|cluster_id=chr7:148380021..148380039,+ | |||
|description=CAGE_peak_4_at_Lrrc56_5end | |||
|id=chr7:148380021..148380039,+ | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.40e-09!102;UBERON:0000924!1.40e-09!102;UBERON:0006601!1.40e-09!102;UBERON:0004111!3.63e-09!122;UBERON:0001049!3.84e-09!52;UBERON:0005068!3.84e-09!52;UBERON:0006241!3.84e-09!52;UBERON:0007135!3.84e-09!52;UBERON:0000033!6.08e-09!63;UBERON:0002346!1.19e-08!71;UBERON:0003075!1.19e-08!71;UBERON:0007284!1.19e-08!71;UBERON:0000073!1.87e-08!75;UBERON:0001016!1.87e-08!75;UBERON:0001017!2.28e-08!73;UBERON:0005743!2.28e-08!73;UBERON:0002616!9.32e-08!49;UBERON:0000955!1.98e-07!50;UBERON:0006238!1.98e-07!50;UBERON:0000025!3.35e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,1.48e-08,122;UBERON:0004121,1.50e-08,95;UBERON:0000924,1.50e-08,95;UBERON:0006601,1.50e-08,95;UBERON:0010314,5.87e-08,92;UBERON:0001017,7.89e-08,73;UBERON:0000073,8.94e-08,54;UBERON:0002346,1.19e-07,64;UBERON:0003075,1.19e-07,64;UBERON:0007284,1.19e-07,64;UBERON:0001016,2.00e-07,75;UBERON:0001049,2.07e-07,52;UBERON:0005068,2.07e-07,52;UBERON:0006241,2.07e-07,52;UBERON:0007135,2.07e-07,52;UBERON:0000025,3.09e-07,114 | |||
|phase1_expression=0.80074423552397,1.04692622291808,0.909998478779072,1.20985684522732,0.500895729946347,0.671517087647559,0,0,0,0.234064526321993,0,0,0,0,0,0.404950534779652,0,0.157731082679119,0.137114433605739,0,6.4632900514813,0.297872853602656,0.261199789138935,0.319984845586813,0.22940928106717,0.57423196411502,0,0.861884930743556,0.760093677825496,0.756090389279792,0.443461021310609,0,0,0,0.288851619751275,0.332469290716985,1.02084678131185,0.837063261473815,1.5626706890476,0.523523743973798,0.588231488031014,0,0.485510353031154,0.755380907853464,0.506884656097573,0,1.56478268869608,0.872100625521786,0.439372365468944,1.1665793944457,0.839918529752175,2.87505128729943,0.167782606057736,0,0,0.514518872071894,1.43266719969378,0,0.606949382578793,0,1.90149421051854,0.338844532069132,0,0.899899717281399,0.988866362566974,0,1.19840044207362,3.07374644257244,0.311068836925433,0.540023753326763,1.47227472945967,0.571301968807607,1.98781686856452,0.244981598429908,0.958454710182364,0.919218786610021,0,1.40456071893706,1.22885226604995,0.791317726381163,1.37231465403614,0.52091337055676,3.07101298901519,0.56276261003168,1.22238598221448,1.76777151284201,0.711858403995515,0.745597783301202,0.454357159999104,0.906858721281426,0.289864488701678,0,0,1.07940638327563,0,1.34408066129201,0.842666520790511,0.511290967734173,0.519572009205738,0.70667914902068,1.26759077799012,0,2.54805239706646,0,0.216491041011214,0.253359865475099,0,0.34255163915718,0.517875767294343,0.890652834388949,0.346970653532272,0.304465478312141,1.15307748628029,0.904335843315735,0.940709657085638,0.502666365318702,1.48316980640624,1.59059292611903,0,0.970601099684455,0.441683036920787,0.969750506270444,0,1.17112318804619,1.8850203613211,1.02182822083437,0.239630249011841,0.599902730993408,0.254140454146129,0.898743836428936,1.83000241127451,0.502617408451458,1.04294592115366,1.79000820131231,1.66230435647648,0.648965052271031,1.01839363850316,0.622034853050465,1.51633655060205,1.05220927943237,0.260240885925407,1.14951052216736,0.180062129805349,0.753524089178575,0.612328492361951,0.512454881139399,1.03071897015702,1.55222022443409,0.215567992932842,0.189106080167819,0.879755620819744,0,0.556094498451196,0.696504333044333,0.411564272815887,0.199034266818493,0,0,0.284163499395593,0.207125772535502,0.234526059981096,0.180062061461015,0.473489471170421,0.590292695242212,0,0.930135779001631,0.804820204198858,1.40118410840603,0.658239399653922,1.31333971263276,1.13496333364198,0.438599962275997,0.439100230582101,1.34206418760372,0.210289948564127,0.617427674275707,0.991256348951394,0.264450566663544,0.213288250535234,0.464473343720877,0.38660238396628,0.605050573870028,0.889512175379481,0.190225626112559,0.474529061544512,0.494096864172033,0.754005626400808,0.795825888164603,1.16978452271472,0.898819408654221,0.216138049874694,0.199141273254367,0.379335801906163,0.342745537829186,0,0,0.775809948670503,0.631222379012867,0.505892296994058,0.738050739898011,0.941992367048249,0.616985819609003,0.592905254174298,0.166845105716094,0.393117990226406,0.449724224769707,0.405720242777006,0.72353147925725,0.25462585178142,0.575392274901621,0.162135226775035,0.274561413188081,1.43768206527355,1.11642284300551,1.5601883655728,0.757736633841335,0.538192240565737,0.482443521363367,1.10851914099963,0.568474235311454,0.488894929326078,0.509235257325564,0.704070744865506,0.670025029767263,1.42826184531608,0.195133647857799,0,1.10732344824387,0.637819074629948,0.491589944147214,0.345369963731791,0.289298117163023,0,0.54390568381871,0,0.827810238914197,0.963303539926752,1.05490517932983,0.327869890753351,0.504941854408746,0,0,0.430846795465598,0.477937595905104,0.891194696329576,0.566153061577665,0,0.584511715822624,0.395287777946524,0.321321316421807,0.141940085208269,0.890328018336276,0.651547837414304,0.329940245945071,0,0.485561272309963,0.302323556964751,0,0.295301892880773,0.614870295887855,1.03371317267288,0.363533729477506,0.712994756769443,0.632073515871632,0,1.03135543248187,0.680879211507576,0.36012218806262,0.646793418913773,0.214337035031592,0.886701168211368,0.535106452806212,1.31639216481697,2.13125464380219,0,0.42366414172764,0.882113592219848,0.16488625294148,0.484393280087717,0.422190474497091,0.238744688006273,0.656563598980245,0.291480836629851,1.29797711407357,0.512612642393558,0.412773735926445,0.555583582109135,0.565105371014073,0,0.457556346413045,0,0,0.138199973804424,0,0.316335993581135,0.406638934253697,0.324016022465404,1.25452977608681,0.87345025498471,0.404593039154462,0.495920734352016,0.26175594198403,0.518459893167171,0.621339313086926,26.4935681181569,0.598066184175915,0.165458490457098,0.777804753376191,0.516639293910924,0.506868376472335,0.938857909166032,1.43224823328345,0.419437377702843,13.0455425246043,15.8416503441826,0.316011120628178,0.405450430580328,0.410843828659309,0.129920822977795,0.179026695667481,0.198681354781265,0.360586348559907,0.295379054349154,0.100966449948148,0.304827226619999,0.100826185136841,0,0.09621184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| |||
|short_description=p4@Lrrc56 | |||
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Latest revision as of 03:36, 26 September 2015
Short description: | p4@Lrrc56 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Lrrc56_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_NM_001172064, NM_001172065, uc009kjx.2, uc012fwq.1_5end |
EntrezGene: | Lrrc56 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 1.48e-08 | 122 |
ectoderm-derived structure | 1.50e-08 | 95 |
ectoderm | 1.50e-08 | 95 |
presumptive ectoderm | 1.50e-08 | 95 |
structure with developmental contribution from neural crest | 5.87e-08 | 92 |
central nervous system | 7.89e-08 | 73 |
regional part of nervous system | 8.94e-08 | 54 |
neurectoderm | 1.19e-07 | 64 |
neural plate | 1.19e-07 | 64 |
presumptive neural plate | 1.19e-07 | 64 |
nervous system | 2.00e-07 | 75 |
neural tube | 2.07e-07 | 52 |
neural rod | 2.07e-07 | 52 |
future spinal cord | 2.07e-07 | 52 |
neural keel | 2.07e-07 | 52 |
tube | 3.09e-07 | 114 |