FFCP PHASE1:Mm9::chr19:7049103..7049172,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:7049103..7049172,+
|short_description=p4@Ppp1r14b
|description=CAGE_peak_4_at_Ppp1r14b_5end
|association_with_transcript=-365bp_to_ENSMUST00000070850,NM_0...") |
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(8 intermediate revisions by the same user not shown) | |||
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=18938 | |EntrezGene=18938 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=2275 | |||
|TSSclassifier=NA | |||
|UniProt=Q62084 | |UniProt=Q62084 | ||
|association_with_transcript=-365bp_to_ENSMUST00000070850,NM_008889,uc008gjs.1_5end | |||
|cluster_id=chr19:7049103..7049172,+ | |||
|description=CAGE_peak_4_at_Ppp1r14b_5end | |||
|id=chr19:7049103..7049172,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.99e-11!23;CL:0000337!1.99e-11!23;CL:0000540!4.87e-11!33;CL:0000047!4.87e-11!33;CL:0000031!4.87e-11!33;CL:0000404!4.87e-11!33;CL:0000221!1.18e-09!44;CL:0000133!1.18e-09!44;CL:0002319!2.74e-09!43;CL:0000393!5.67e-07!39;CL:0000211!5.67e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.99e-11,23;CL:0000337,1.99e-11,23;CL:0000540,4.85e-11,33;CL:0000047,4.85e-11,33;CL:0000031,4.85e-11,33;CL:0000404,4.85e-11,33;CL:0000221,1.18e-09,44;CL:0000133,1.18e-09,44;CL:0002319,2.73e-09,43;CL:0000393,5.66e-07,39;CL:0000211,5.66e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!5.64e-18!102;UBERON:0000924!5.64e-18!102;UBERON:0006601!5.64e-18!102;UBERON:0001017!1.06e-17!73;UBERON:0005743!1.06e-17!73;UBERON:0000073!1.70e-17!75;UBERON:0001016!1.70e-17!75;UBERON:0002346!7.01e-17!71;UBERON:0003075!7.01e-17!71;UBERON:0007284!7.01e-17!71;UBERON:0001049!1.04e-14!52;UBERON:0005068!1.04e-14!52;UBERON:0006241!1.04e-14!52;UBERON:0007135!1.04e-14!52;UBERON:0000033!6.22e-14!63;UBERON:0000955!6.50e-13!50;UBERON:0006238!6.50e-13!50;UBERON:0003056!1.28e-12!49;UBERON:0002616!1.98e-12!49;UBERON:0002020!6.78e-12!34;UBERON:0003080!1.38e-11!40;UBERON:0002780!4.99e-11!39;UBERON:0001890!4.99e-11!39;UBERON:0006240!4.99e-11!39;UBERON:0002791!3.42e-09!29;UBERON:0003528!3.42e-09!29;UBERON:0001893!3.42e-09!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,1.05e-17,73;UBERON:0001016,1.69e-17,75;UBERON:0004121,8.31e-17,95;UBERON:0000924,8.31e-17,95;UBERON:0006601,8.31e-17,95;UBERON:0010314,4.10e-16,92;UBERON:0002346,5.55e-16,64;UBERON:0003075,5.55e-16,64;UBERON:0007284,5.55e-16,64;UBERON:0000073,3.60e-15,54;UBERON:0010371,6.24e-15,73;UBERON:0001049,1.04e-14,52;UBERON:0005068,1.04e-14,52;UBERON:0006241,1.04e-14,52;UBERON:0007135,1.04e-14,52;UBERON:0003056,1.28e-12,49;UBERON:0000955,3.26e-12,47;UBERON:0006238,3.26e-12,47;UBERON:0002020,6.75e-12,34;UBERON:0002616,9.83e-12,46;UBERON:0003080,1.37e-11,40;UBERON:0002780,4.97e-11,39;UBERON:0001890,4.97e-11,39;UBERON:0006240,4.97e-11,39;UBERON:0003528,3.41e-09,29;UBERON:0002791,3.41e-09,29;UBERON:0001893,3.41e-09,29 | |||
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| 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| ||
|short_description=p4@Ppp1r14b | |||
}} | }} |
Latest revision as of 03:31, 26 September 2015
Short description: | p4@Ppp1r14b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Ppp1r14b_5end |
Coexpression cluster: | MCL_coexpression_mm9:2275 |
Association with transcript: | -365bp_to_ENSMUST00000070850, NM_008889, uc008gjs.1_5end |
EntrezGene: | Ppp1r14b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.99e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.99e-11 | 23 |
neuron | 4.85e-11 | 33 |
neuronal stem cell | 4.85e-11 | 33 |
neuroblast | 4.85e-11 | 33 |
electrically signaling cell | 4.85e-11 | 33 |
ectodermal cell | 1.18e-09 | 44 |
neurectodermal cell | 1.18e-09 | 44 |
neural cell | 2.73e-09 | 43 |
electrically responsive cell | 5.66e-07 | 39 |
electrically active cell | 5.66e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 1.05e-17 | 73 |
nervous system | 1.69e-17 | 75 |
ectoderm-derived structure | 8.31e-17 | 95 |
ectoderm | 8.31e-17 | 95 |
presumptive ectoderm | 8.31e-17 | 95 |
structure with developmental contribution from neural crest | 4.10e-16 | 92 |
neurectoderm | 5.55e-16 | 64 |
neural plate | 5.55e-16 | 64 |
presumptive neural plate | 5.55e-16 | 64 |
regional part of nervous system | 3.60e-15 | 54 |
ecto-epithelium | 6.24e-15 | 73 |
neural tube | 1.04e-14 | 52 |
neural rod | 1.04e-14 | 52 |
future spinal cord | 1.04e-14 | 52 |
neural keel | 1.04e-14 | 52 |
pre-chordal neural plate | 1.28e-12 | 49 |
brain | 3.26e-12 | 47 |
future brain | 3.26e-12 | 47 |
gray matter | 6.75e-12 | 34 |
regional part of brain | 9.83e-12 | 46 |
anterior neural tube | 1.37e-11 | 40 |
regional part of forebrain | 4.97e-11 | 39 |
forebrain | 4.97e-11 | 39 |
future forebrain | 4.97e-11 | 39 |
brain grey matter | 3.41e-09 | 29 |
regional part of telencephalon | 3.41e-09 | 29 |
telencephalon | 3.41e-09 | 29 |