FFCP PHASE1:Mm9::chr7:148246861..148246945,+: Difference between revisions
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{{FFCP|EntrezGene=330671|HGNC=|MCL_coexpression_id=22|UniProt=Q766D5|association_with_transcript=-227bp_to_ENSMUST00000048002,NM_177897,uc009kje.1_5end|description=CAGE_peak_1_at_B4galnt4_5end|id=chr7:148246861..148246945,+|ontology_enrichment_celltype=CL:0000540!9.09e-15!33;CL:0000047!9.09e-15!33;CL:0000031!9.09e-15!33;CL:0000404!9.09e-15!33;CL:0000117!1.41e-13!23;CL:0000337!1.41e-13!23;CL:0000221!1.07e-09!44;CL:0000133!1.07e-09!44;CL:0002319!1.56e-09!43;CL:0000393!3.45e-09!39;CL:0000211!3.45e-09!39|ontology_enrichment_celltype_v019_2=CL:0000540,3.24e-15,33;CL:0000047,3.24e-15,33;CL:0000031,3.24e-15,33;CL:0000404,3.24e-15,33;CL:0000117,5.53e-14,23;CL:0000337,5.53e-14,23;CL:0000393,7.81e-10,39;CL:0000211,7.81e-10,39;CL:0000221,1.25e-09,44;CL:0000133,1.25e-09,44;CL:0002319,1.84e-09,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!2.98e-26!73;UBERON:0005743!2.98e-26!73;UBERON:0000073!8.71e-25!75;UBERON:0001016!8.71e-25!75;UBERON:0002346!7.02e-23!71;UBERON:0003075!7.02e-23!71;UBERON:0007284!7.02e-23!71;UBERON:0000033!6.37e-22!63;UBERON:0001049!1.30e-21!52;UBERON:0005068!1.30e-21!52;UBERON:0006241!1.30e-21!52;UBERON:0007135!1.30e-21!52;UBERON:0004121!2.24e-21!102;UBERON:0000924!2.24e-21!102;UBERON:0006601!2.24e-21!102;UBERON:0003056!9.91e-21!49;UBERON:0000955!1.36e-20!50;UBERON:0006238!1.36e-20!50;UBERON:0002616!4.09e-20!49;UBERON:0003080!3.20e-18!40;UBERON:0002780!1.21e-17!39;UBERON:0001890!1.21e-17!39;UBERON:0006240!1.21e-17!39;UBERON:0002020!5.33e-16!34;UBERON:0000153!9.02e-14!94;UBERON:0002791!1.32e-13!29;UBERON:0003528!1.32e-13!29;UBERON:0001893!1.32e-13!29;UBERON:0007811!7.88e-12!86;UBERON:0000956!2.14e-09!21;UBERON:0001869!2.14e-09!21;UBERON:0000203!2.14e-09!21;UBERON:0002619!5.21e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.20e-27,73;UBERON:0002346,3.23e-25,64;UBERON:0003075,3.23e-25,64;UBERON:0007284,3.23e-25,64;UBERON:0001016,4.11e-25,75;UBERON:0000073,3.87e-23,54;UBERON:0004121,5.91e-23,95;UBERON:0000924,5.91e-23,95;UBERON:0006601,5.91e-23,95;UBERON:0010371,3.99e-22,73;UBERON:0001049,5.26e-22,52;UBERON:0005068,5.26e-22,52;UBERON:0006241,5.26e-22,52;UBERON:0007135,5.26e-22,52;UBERON:0003056,4.32e-21,49;UBERON:0000955,1.98e-19,47;UBERON:0006238,1.98e-19,47;UBERON:0002616,6.04e-19,46;UBERON:0003080,1.72e-18,40;UBERON:0002780,6.79e-18,39;UBERON:0001890,6.79e-18,39;UBERON:0006240,6.79e-18,39;UBERON:0002020,3.42e-16,34;UBERON:0003528,1.00e-13,29;UBERON:0002791,1.00e-13,29;UBERON:0001893,1.00e-13,29;UBERON:0010314,1.10e-12,92;UBERON:0000956,2.18e-09,21;UBERON:0001869,2.18e-09,21;UBERON:0000203,2.18e-09,21;UBERON:0002619,6.09e-07,17|phase1_expression=16.1750335575842,1.74487703819681,1.81999695755814,3.32710632437513,7.01254021924886,5.54001597309236,6.77476657727024,3.22808308603941,0.703943610758334,0.234064526321993,1.36974374580404,2.6324812468461,0,0.262261207256992,1.99865857089398,1.61980213911861,0.699561878128147,0.157731082679119,0.137114433605739,0,5.01755411891312,4.0709289992363,1.82839852397255,3.19984845586813,5.27641346454491,1.72269589234506,4.30761996159075,2.80112602491656,11.2113817479261,9.8291750606373,7.76056787293567,10.1604907753541,9.22597181376855,0,7.22129049378186,8.97667084935859,5.51257261908397,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0.367093504323363,1.56478268869608,1.30815093828268,0.659058548203415,0.194429899074283,1.53985063787899,0,0.167782606057736,2.17608642603403,0.336093799142464,0,0,0,39.6540263284812,51.3121249893872,45.0020296489387,0.677689064138264,0.889294796111139,0,0,0.7104801149461,4.79360176829448,9.98967593836042,34.2175720617976,36.8566211645515,36.8068682364919,23.1377297367081,20.5407743085001,33.8074605833273,34.0251422114739,42.284064184061,22.0231761998777,26.3035916455487,20.2760623898241,48.270381309251,41.6268778390964,34.3802824567462,15.6342479440773,16.3201156909187,20.0165704587621,26.2219441071564,19.0778052270798,32.0607046819517,0.454357159999104,0.604572480854284,0.289864488701678,0,0,0,0,0,1.54488862144927,0,0,0,9.01397886570755,0,0,0,0.649473123033642,0.760079596425296,1.01104889002957,1.94112595522402,0.776813650941515,0.742210695324124,10.7560902595004,6.08930956624282,4.84292544237723,4.82312449768392,3.05730638552832,0.502666365318702,0.247194967734374,0.144599356919912,0.884610551949874,0.970601099684455,0,0,0,23.4224637609238,23.0391377494801,6.64188343542338,0.11981512450592,1.19980546198682,0.254140454146129,27.5614776504874,31.1100409916666,82.1779462818133,34.591039718263,39.1244649715406,27.0124457927428,30.1768749306029,8.1471491080253,0.497627882440372,8.08712826987759,2.31486041475121,31.7493880828997,23.4500146522142,22.5077662256687,13.2620239695429,17.5534167810426,17.039124797885,14.2426621330788,7.50239775143145,33.8441748904562,29.311442426012,34.1345180878061,23.0155519048954,15.2925987074079,7.66154766348766,3.90986059175093,16.1217756122979,0,0,0,6.21377317606506,4.22146907965973,2.52086886045421,3.07768156260773,0.393528463494808,0.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=330671 | |||
|HGNC= | |||
|MCL_coexpression_id=22 | |||
|TSSclassifier=NA | |||
|UniProt=Q766D5 | |||
|association_with_transcript=-227bp_to_ENSMUST00000048002,NM_177897,uc009kje.1_5end | |||
|cluster_id=chr7:148246861..148246945,+ | |||
|description=CAGE_peak_1_at_B4galnt4_5end | |||
|id=chr7:148246861..148246945,+ | |||
|ontology_enrichment_celltype=CL:0000540!9.09e-15!33;CL:0000047!9.09e-15!33;CL:0000031!9.09e-15!33;CL:0000404!9.09e-15!33;CL:0000117!1.41e-13!23;CL:0000337!1.41e-13!23;CL:0000221!1.07e-09!44;CL:0000133!1.07e-09!44;CL:0002319!1.56e-09!43;CL:0000393!3.45e-09!39;CL:0000211!3.45e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000540,3.24e-15,33;CL:0000047,3.24e-15,33;CL:0000031,3.24e-15,33;CL:0000404,3.24e-15,33;CL:0000117,5.53e-14,23;CL:0000337,5.53e-14,23;CL:0000393,7.81e-10,39;CL:0000211,7.81e-10,39;CL:0000221,1.25e-09,44;CL:0000133,1.25e-09,44;CL:0002319,1.84e-09,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.98e-26!73;UBERON:0005743!2.98e-26!73;UBERON:0000073!8.71e-25!75;UBERON:0001016!8.71e-25!75;UBERON:0002346!7.02e-23!71;UBERON:0003075!7.02e-23!71;UBERON:0007284!7.02e-23!71;UBERON:0000033!6.37e-22!63;UBERON:0001049!1.30e-21!52;UBERON:0005068!1.30e-21!52;UBERON:0006241!1.30e-21!52;UBERON:0007135!1.30e-21!52;UBERON:0004121!2.24e-21!102;UBERON:0000924!2.24e-21!102;UBERON:0006601!2.24e-21!102;UBERON:0003056!9.91e-21!49;UBERON:0000955!1.36e-20!50;UBERON:0006238!1.36e-20!50;UBERON:0002616!4.09e-20!49;UBERON:0003080!3.20e-18!40;UBERON:0002780!1.21e-17!39;UBERON:0001890!1.21e-17!39;UBERON:0006240!1.21e-17!39;UBERON:0002020!5.33e-16!34;UBERON:0000153!9.02e-14!94;UBERON:0002791!1.32e-13!29;UBERON:0003528!1.32e-13!29;UBERON:0001893!1.32e-13!29;UBERON:0007811!7.88e-12!86;UBERON:0000956!2.14e-09!21;UBERON:0001869!2.14e-09!21;UBERON:0000203!2.14e-09!21;UBERON:0002619!5.21e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.20e-27,73;UBERON:0002346,3.23e-25,64;UBERON:0003075,3.23e-25,64;UBERON:0007284,3.23e-25,64;UBERON:0001016,4.11e-25,75;UBERON:0000073,3.87e-23,54;UBERON:0004121,5.91e-23,95;UBERON:0000924,5.91e-23,95;UBERON:0006601,5.91e-23,95;UBERON:0010371,3.99e-22,73;UBERON:0001049,5.26e-22,52;UBERON:0005068,5.26e-22,52;UBERON:0006241,5.26e-22,52;UBERON:0007135,5.26e-22,52;UBERON:0003056,4.32e-21,49;UBERON:0000955,1.98e-19,47;UBERON:0006238,1.98e-19,47;UBERON:0002616,6.04e-19,46;UBERON:0003080,1.72e-18,40;UBERON:0002780,6.79e-18,39;UBERON:0001890,6.79e-18,39;UBERON:0006240,6.79e-18,39;UBERON:0002020,3.42e-16,34;UBERON:0003528,1.00e-13,29;UBERON:0002791,1.00e-13,29;UBERON:0001893,1.00e-13,29;UBERON:0010314,1.10e-12,92;UBERON:0000956,2.18e-09,21;UBERON:0001869,2.18e-09,21;UBERON:0000203,2.18e-09,21;UBERON:0002619,6.09e-07,17 | |||
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| |||
|short_description=p1@B4galnt4 | |||
}} |
Latest revision as of 03:24, 26 September 2015
Short description: | p1@B4galnt4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_B4galnt4_5end |
Coexpression cluster: | MCL_coexpression_mm9:22 |
Association with transcript: | -227bp_to_ENSMUST00000048002, NM_177897, uc009kje.1_5end |
EntrezGene: | B4galnt4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 3.24e-15 | 33 |
neuronal stem cell | 3.24e-15 | 33 |
neuroblast | 3.24e-15 | 33 |
electrically signaling cell | 3.24e-15 | 33 |
CNS neuron (sensu Vertebrata) | 5.53e-14 | 23 |
neuroblast (sensu Vertebrata) | 5.53e-14 | 23 |
electrically responsive cell | 7.81e-10 | 39 |
electrically active cell | 7.81e-10 | 39 |
ectodermal cell | 1.25e-09 | 44 |
neurectodermal cell | 1.25e-09 | 44 |
neural cell | 1.84e-09 | 43 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.20e-27 | 73 |
neurectoderm | 3.23e-25 | 64 |
neural plate | 3.23e-25 | 64 |
presumptive neural plate | 3.23e-25 | 64 |
nervous system | 4.11e-25 | 75 |
regional part of nervous system | 3.87e-23 | 54 |
ectoderm-derived structure | 5.91e-23 | 95 |
ectoderm | 5.91e-23 | 95 |
presumptive ectoderm | 5.91e-23 | 95 |
ecto-epithelium | 3.99e-22 | 73 |
neural tube | 5.26e-22 | 52 |
neural rod | 5.26e-22 | 52 |
future spinal cord | 5.26e-22 | 52 |
neural keel | 5.26e-22 | 52 |
pre-chordal neural plate | 4.32e-21 | 49 |
brain | 1.98e-19 | 47 |
future brain | 1.98e-19 | 47 |
regional part of brain | 6.04e-19 | 46 |
anterior neural tube | 1.72e-18 | 40 |
regional part of forebrain | 6.79e-18 | 39 |
forebrain | 6.79e-18 | 39 |
future forebrain | 6.79e-18 | 39 |
gray matter | 3.42e-16 | 34 |
brain grey matter | 1.00e-13 | 29 |
regional part of telencephalon | 1.00e-13 | 29 |
telencephalon | 1.00e-13 | 29 |
structure with developmental contribution from neural crest | 1.10e-12 | 92 |
cerebral cortex | 2.18e-09 | 21 |
cerebral hemisphere | 2.18e-09 | 21 |
pallium | 2.18e-09 | 21 |
regional part of cerebral cortex | 6.09e-07 | 17 |