FFCP PHASE1:Mm9::chr9:106150234..106150243,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=11655 | |EntrezGene=11655 | ||
|HGNC= | |HGNC= | ||
|TSSclassifier=NA | |||
|UniProt=Q3V0B2,Q8VC19 | |UniProt=Q3V0B2,Q8VC19 | ||
|association_with_transcript=41bp_to_NM_020559,uc009rjj.2,uc012gzt.1_5end | |association_with_transcript=41bp_to_NM_020559,uc009rjj.2,uc012gzt.1_5end | ||
|cluster_id=chr9:106150234..106150243,- | |||
|description=CAGE_peak_2_at_Alas1_5end | |description=CAGE_peak_2_at_Alas1_5end | ||
|id=chr9:106150234..106150243,- | |id=chr9:106150234..106150243,- | ||
|ontology_enrichment_celltype=CL:0000117!6.40e-12!23;CL:0000337!6.40e-12!23;CL:0002319!5.22e-10!43;CL:0000221!1.48e-09!44;CL:0000133!1.48e-09!44;CL:0000540!2.91e-09!33;CL:0000047!2.91e-09!33;CL:0000031!2.91e-09!33;CL:0000404!2.91e-09!33;CL:0000055!1.84e-08!50;CL:0000393!3.88e-08!39;CL:0000211!3.88e-08!39 | |ontology_enrichment_celltype=CL:0000117!6.40e-12!23;CL:0000337!6.40e-12!23;CL:0002319!5.22e-10!43;CL:0000221!1.48e-09!44;CL:0000133!1.48e-09!44;CL:0000540!2.91e-09!33;CL:0000047!2.91e-09!33;CL:0000031!2.91e-09!33;CL:0000404!2.91e-09!33;CL:0000055!1.84e-08!50;CL:0000393!3.88e-08!39;CL:0000211!3.88e-08!39 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.40e-12,23;CL:0000337,6.40e-12,23;CL:0002319,5.22e-10,43;CL:0000221,1.48e-09,44;CL:0000133,1.48e-09,44;CL:0000540,2.91e-09,33;CL:0000047,2.91e-09,33;CL:0000031,2.91e-09,33;CL:0000404,2.91e-09,33;CL:0000393,3.88e-08,39;CL:0000211,3.88e-08,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!2.35e-23!73;UBERON:0005743!2.35e-23!73;UBERON:0000073!9.16e-23!75;UBERON:0001016!9.16e-23!75;UBERON:0000955!2.19e-19!50;UBERON:0006238!2.19e-19!50;UBERON:0001049!2.36e-19!52;UBERON:0005068!2.36e-19!52;UBERON:0006241!2.36e-19!52;UBERON:0007135!2.36e-19!52;UBERON:0002616!1.03e-18!49;UBERON:0002020!3.90e-16!34;UBERON:0003080!4.03e-16!40;UBERON:0002780!1.54e-15!39;UBERON:0001890!1.54e-15!39;UBERON:0006240!1.54e-15!39;UBERON:0000033!5.27e-15!63;UBERON:0004121!1.65e-14!102;UBERON:0000924!1.65e-14!102;UBERON:0006601!1.65e-14!102;UBERON:0002791!5.12e-14!29;UBERON:0003528!5.12e-14!29;UBERON:0001893!5.12e-14!29;UBERON:0003056!2.33e-12!49;UBERON:0002346!1.18e-11!71;UBERON:0003075!1.18e-11!71;UBERON:0007284!1.18e-11!71;UBERON:0000153!1.09e-10!94;UBERON:0007811!1.59e-10!86;UBERON:0000956!3.19e-10!21;UBERON:0001869!3.19e-10!21;UBERON:0000203!3.19e-10!21;UBERON:0002619!1.35e-08!17;UBERON:0002021!5.02e-07!10;UBERON:0000411!5.02e-07!10;UBERON:0001950!5.02e-07!10 | |ontology_enrichment_uberon=UBERON:0001017!2.35e-23!73;UBERON:0005743!2.35e-23!73;UBERON:0000073!9.16e-23!75;UBERON:0001016!9.16e-23!75;UBERON:0000955!2.19e-19!50;UBERON:0006238!2.19e-19!50;UBERON:0001049!2.36e-19!52;UBERON:0005068!2.36e-19!52;UBERON:0006241!2.36e-19!52;UBERON:0007135!2.36e-19!52;UBERON:0002616!1.03e-18!49;UBERON:0002020!3.90e-16!34;UBERON:0003080!4.03e-16!40;UBERON:0002780!1.54e-15!39;UBERON:0001890!1.54e-15!39;UBERON:0006240!1.54e-15!39;UBERON:0000033!5.27e-15!63;UBERON:0004121!1.65e-14!102;UBERON:0000924!1.65e-14!102;UBERON:0006601!1.65e-14!102;UBERON:0002791!5.12e-14!29;UBERON:0003528!5.12e-14!29;UBERON:0001893!5.12e-14!29;UBERON:0003056!2.33e-12!49;UBERON:0002346!1.18e-11!71;UBERON:0003075!1.18e-11!71;UBERON:0007284!1.18e-11!71;UBERON:0000153!1.09e-10!94;UBERON:0007811!1.59e-10!86;UBERON:0000956!3.19e-10!21;UBERON:0001869!3.19e-10!21;UBERON:0000203!3.19e-10!21;UBERON:0002619!1.35e-08!17;UBERON:0002021!5.02e-07!10;UBERON:0000411!5.02e-07!10;UBERON:0001950!5.02e-07!10 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.35e-23,73;UBERON:0001016,9.16e-23,75;UBERON:0000073,5.19e-21,54;UBERON:0001049,2.36e-19,52;UBERON:0005068,2.36e-19,52;UBERON:0006241,2.36e-19,52;UBERON:0007135,2.36e-19,52;UBERON:0004121,1.00e-18,95;UBERON:0000924,1.00e-18,95;UBERON:0006601,1.00e-18,95;UBERON:0000955,9.27e-18,47;UBERON:0006238,9.27e-18,47;UBERON:0002616,4.21e-17,46;UBERON:0002346,2.54e-16,64;UBERON:0003075,2.54e-16,64;UBERON:0007284,2.54e-16,64;UBERON:0002020,3.90e-16,34;UBERON:0003080,4.03e-16,40;UBERON:0002780,1.54e-15,39;UBERON:0001890,1.54e-15,39;UBERON:0006240,1.54e-15,39;UBERON:0010371,3.49e-15,73;UBERON:0003528,5.12e-14,29;UBERON:0002791,5.12e-14,29;UBERON:0001893,5.12e-14,29;UBERON:0003056,2.33e-12,49;UBERON:0000956,3.19e-10,21;UBERON:0001869,3.19e-10,21;UBERON:0000203,3.19e-10,21;UBERON:0002619,1.35e-08,17;UBERON:0002021,5.02e-07,10;UBERON:0000411,5.02e-07,10;UBERON:0001950,5.02e-07,10 | |||
|phase1_expression=7.68714466103011,3.48975407639361,3.63999391511629,2.11724947914781,2.00358291978539,5.87577451691614,7.94282978024787,7.48915275961142,2.111830832275,2.57470978954193,9.07455231595176,13.7208113471979,9.0736386863539,8.56719943706175,5.66286595086627,3.84703008040669,10.4934281719222,9.30613387806801,8.91243818437302,5.51706547337439,7.82398269389842,3.77305614563364,3.91799683708403,6.39969691173627,5.73523202667925,4.59385571292016,4.73838195774982,4.95583835177545,10.0712412311878,7.30887376303799,11.9734475753865,11.4305521222734,14.1464901144451,31.6963362030877,6.64358725427932,11.470190529736,9.18762103180661,12.5559489221072,8.5946887897618,10.9939986234498,4.70585190424811,8.19654581950135,11.1667381197165,14.604030885167,13.4831318521954,9.36088436024576,8.60630478782843,11.1192829754028,8.12838876117546,8.94377535741704,11.6188729949051,24.4379359420452,6.54352163625172,4.35217285206807,6.04968838456435,5.91696702882678,6.01720223871389,5.67239301505187,16.7922662513466,16.398720357433,20.9164363157039,16.2645375393183,12.450127145556,14.8483453351431,18.7884608887725,26.2877642530057,16.4780060785123,12.6792040756113,13.4796496001021,14.3106294631592,12.1988477583802,13.139945282575,16.565140571371,13.4739879136449,15.0477389498631,22.0612508786405,17.6185409599022,13.9179198512855,15.8214729253931,20.0467157349895,18.1145534332771,19.2737947106001,16.1926139420801,11.2552522006336,12.835052813252,10.0173719061047,18.0812034614861,19.0127434741807,7.95125029998433,8.69072941228034,16.5222758559956,5.16254326188832,3.39985666853875,1.07940638327563,1.94932925234301,0.448026887097336,6.03911006566533,7.15807354827843,4.93593408745451,3.5333957451034,7.04217098883402,7.69958864485907,5.09610479413291,0,6.92771331235885,6.33399663687746,6.0662933401774,4.22480354960522,8.54495016035667,4.00793775475027,7.45986905094384,4.87144765299426,5.07354093963329,3.76806601381556,5.87943535678524,4.64966387919799,5.6854842578906,5.35017620603673,7.07688441559899,8.08834249737046,6.8460870722722,8.727754556434,11.1835056730873,12.0040126774734,11.7290155815535,7.66371165625774,3.71426885968353,1.19980546198682,2.92261522268049,17.0761328921498,15.0975198930147,13.5706700281894,16.5133104182663,16.1100738118108,10.8049783170971,14.7639549391659,8.24898847187562,7.0911973247753,7.07623723614289,4.62972082950243,10.2795149940536,8.04657365517155,9.90341713929421,7.38453607395004,7.89223390155403,8.45550553880009,6.55912071918102,7.24369438069244,7.11374376678379,9.07709184805532,10.5570674498369,10.5213951565236,10.5657954705727,9.75106066262066,9.05441400194951,6.17006227137329,2.1066395619397,1.02939162845886,1.42081749697796,5.59239585845855,6.80125573945179,5.04173772090842,7.33908680314152,4.9191057936851,6.32495162838251,6.0458825635106,6.70683503499048,8.64063533517054,7.73431294593358,8.37254066803386,8.10688095458557,7.16379938384128,9.00155472693308,7.64976586934119,18.2952255250791,15.3327872445134,3.96502539580558,10.3135720998782,11.9441420299731,7.66381017139447,7.98978260196979,10.4875432804138,16.9007313322101,14.0766963323294,8.54152310780121,13.3406153326449,14.3261069016154,12.3353012665514,13.062593836981,5.39291645192533,6.70027954611552,8.96135729644652,11.7594098590911,8.22589290790047,5.63538678365402,7.94240178596726,8.53390943537553,9.25792822552205,10.813447848248,8.26616828685772,10.5189147653721,8.76119863844784,1.1858105083486,5.6727335943472,5.11053387294328,5.39669069723649,5.68008339887808,4.82354319504834,2.80088436959562,2.30156909960649,5.5125977103512,3.29473695825698,2.87536413054709,4.83783231969054,5.61667811606209,2.02063102357689,2.87035861635059,2.8946611281802,9.79191907883005,8.33762211790133,6.02970412835496,9.16623463186016,8.91822943496308,7.37027532743989,9.52174563544055,10.9274842800367,10.719189799221,13.5093460685753,10.2051051940792,10.4872521418072,9.49767400262426,11.7165737451024,18.0949540727127,23.3879444042045,6.88469982226651,9.65778612066564,10.7568895291821,12.5416504653657,6.55739781506702,12.1186045058099,10.4117712407365,10.5418460960092,12.9254038639679,7.64700153448166,6.90675889655422,8.49229592366497,5.66734982344852,10.8134667427185,8.69633111482352,19.921921618152,5.67760340833074,11.5742642383716,10.750539317336,7.25868541079156,6.63725691699814,7.28341908464944,7.55808892411878,5.46954731292105,4.13422650033082,5.22639751504677,7.75284879504663,5.81653967164009,7.84294232446387,7.9009189483954,11.5960469432499,3.09406629744561,11.234506989875,8.10274923140896,12.9358683782754,13.0745591369271,10.4630737848941,11.7723419617367,9.21474515371877,13.0919928119278,8.21350978222986,11.2270997557825,11.2469483008031,10.2229476823718,10.9795810153216,9.46912921372047,9.07229814423837,9.19189038572343,13.699599321603,10.0129663085675,6.32222258952055,9.28740905834501,5.74103034846106,7.34636982318295,6.42462870288818,4.57556346413045,5.09935289981566,4.75834937900437,6.49539876880792,10.5013767981662,12.9697757368265,7.11618134943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|phase1_expression=7.68714466103011,3.48975407639361,3.63999391511629,2.11724947914781,2.00358291978539,5.87577451691614,7.94282978024787,7.48915275961142,2.111830832275,2.57470978954193,9.07455231595176,13.7208113471979,9.0736386863539,8.56719943706175,5.66286595086627,3.84703008040669,10.4934281719222,9.30613387806801,8.91243818437302,5.51706547337439,7.82398269389842,3.77305614563364,3.91799683708403,6.39969691173627,5.73523202667925,4.59385571292016,4.73838195774982,4.95583835177545,10.0712412311878,7.30887376303799,11.9734475753865,11.4305521222734,14.1464901144451,31.6963362030877,6.64358725427932,11.470190529736,9.18762103180661,12.5559489221072,8.5946887897618,10.9939986234498,4.70585190424811,8.19654581950135,11.1667381197165,14.604030885167,13.4831318521954,9.36088436024576,8.60630478782843,11.1192829754028,8.12838876117546,8.94377535741704,11.6188729949051,24.4379359420452,6.54352163625172,4.35217285206807,6.04968838456435,5.91696702882678,6.01720223871389,5.67239301505187,16.7922662513466,16.398720357433,20.9164363157039,16.2645375393183,12.450127145556,14.8483453351431,18.7884608887725,26.2877642530057,16.4780060785123,12.6792040756113,13.4796496001021,14.3106294631592,12.1988477583802,13.139945282575,16.565140571371,13.4739879136449,15.0477389498631,22.0612508786405,17.6185409599022,13.9179198512855,15.8214729253931,20.0467157349895,18.1145534332771,19.2737947106001,16.1926139420801,11.2552522006336,12.835052813252,10.0173719061047,18.0812034614861,19.0127434741807,7.95125029998433,8.69072941228034,16.5222758559956,5.16254326188832,3.39985666853875,1.07940638327563,1.94932925234301,0.448026887097336,6.03911006566533,7.15807354827843,4.93593408745451,3.5333957451034,7.04217098883402,7.69958864485907,5.09610479413291,0,6.92771331235885,6.33399663687746,6.0662933401774,4.22480354960522,8.54495016035667,4.00793775475027,7.45986905094384,4.87144765299426,5.07354093963329,3.76806601381556,5.87943535678524,4.64966387919799,5.6854842578906,5.35017620603673,7.07688441559899,8.08834249737046,6.8460870722722,8.727754556434,11.1835056730873,12.0040126774734,11.7290155815535,7.66371165625774,3.71426885968353,1.19980546198682,2.92261522268049,17.0761328921498,15.0975198930147,13.5706700281894,16.5133104182663,16.1100738118108,10.8049783170971,14.7639549391659,8.24898847187562,7.0911973247753,7.07623723614289,4.62972082950243,10.2795149940536,8.04657365517155,9.90341713929421,7.38453607395004,7.89223390155403,8.45550553880009,6.55912071918102,7.24369438069244,7.11374376678379,9.07709184805532,10.5570674498369,10.5213951565236,10.5657954705727,9.75106066262066,9.05441400194951,6.17006227137329,2.1066395619397,1.02939162845886,1.42081749697796,5.59239585845855,6.80125573945179,5.04173772090842,7.33908680314152,4.9191057936851,6.32495162838251,6.0458825635106,6.70683503499048,8.64063533517054,7.73431294593358,8.37254066803386,8.10688095458557,7.16379938384128,9.00155472693308,7.64976586934119,18.2952255250791,15.3327872445134,3.96502539580558,10.3135720998782,11.9441420299731,7.66381017139447,7.98978260196979,10.4875432804138,16.9007313322101,14.0766963323294,8.54152310780121,13.3406153326449,14.3261069016154,12.3353012665514,13.062593836981,5.39291645192533,6.70027954611552,8.96135729644652,11.7594098590911,8.22589290790047,5.63538678365402,7.94240178596726,8.53390943537553,9.25792822552205,10.813447848248,8.26616828685772,10.5189147653721,8.76119863844784,1.1858105083486,5.6727335943472,5.11053387294328,5.39669069723649,5.68008339887808,4.82354319504834,2.80088436959562,2.30156909960649,5.5125977103512,3.29473695825698,2.87536413054709,4.83783231969054,5.61667811606209,2.02063102357689,2.87035861635059,2.8946611281802,9.79191907883005,8.33762211790133,6.02970412835496,9.16623463186016,8.91822943496308,7.37027532743989,9.52174563544055,10.9274842800367,10.719189799221,13.5093460685753,10.2051051940792,10.4872521418072,9.49767400262426,11.7165737451024,18.0949540727127,23.3879444042045,6.88469982226651,9.65778612066564,10.7568895291821,12.5416504653657,6.55739781506702,12.1186045058099,10.4117712407365,10.5418460960092,12.9254038639679,7.64700153448166,6.90675889655422,8.49229592366497,5.66734982344852,10.8134667427185,8.69633111482352,19.921921618152,5.67760340833074,11.5742642383716,10.750539317336,7.25868541079156,6.63725691699814,7.28341908464944,7.55808892411878,5.46954731292105,4.13422650033082,5.22639751504677,7.75284879504663,5.81653967164009,7.84294232446387,7.9009189483954,11.5960469432499,3.09406629744561,11.234506989875,8.10274923140896,12.9358683782754,13.0745591369271,10.4630737848941,11.7723419617367,9.21474515371877,13.0919928119278,8.21350978222986,11.2270997557825,11.2469483008031,10.2229476823718,10.9795810153216,9.46912921372047,9.07229814423837,9.19189038572343,13.699599321603,10.0129663085675,6.32222258952055,9.28740905834501,5.74103034846106,7.34636982318295,6.42462870288818,4.57556346413045,5.09935289981566,4.75834937900437,6.49539876880792,10.5013767981662,12.9697757368265,7.11618134943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| ||
|short_description=p2@Alas1 | |short_description=p2@Alas1 | ||
}} | }} |
Latest revision as of 02:45, 26 September 2015
Short description: | p2@Alas1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Alas1_5end |
Coexpression cluster: | NA |
Association with transcript: | 41bp_to_NM_020559, uc009rjj.2, uc012gzt.1_5end |
EntrezGene: | Alas1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.40e-12 | 23 |
neuroblast (sensu Vertebrata) | 6.40e-12 | 23 |
neural cell | 5.22e-10 | 43 |
ectodermal cell | 1.48e-09 | 44 |
neurectodermal cell | 1.48e-09 | 44 |
neuron | 2.91e-09 | 33 |
neuronal stem cell | 2.91e-09 | 33 |
neuroblast | 2.91e-09 | 33 |
electrically signaling cell | 2.91e-09 | 33 |
electrically responsive cell | 3.88e-08 | 39 |
electrically active cell | 3.88e-08 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.35e-23 | 73 |
nervous system | 9.16e-23 | 75 |
regional part of nervous system | 5.19e-21 | 54 |
neural tube | 2.36e-19 | 52 |
neural rod | 2.36e-19 | 52 |
future spinal cord | 2.36e-19 | 52 |
neural keel | 2.36e-19 | 52 |
ectoderm-derived structure | 1.00e-18 | 95 |
ectoderm | 1.00e-18 | 95 |
presumptive ectoderm | 1.00e-18 | 95 |
brain | 9.27e-18 | 47 |
future brain | 9.27e-18 | 47 |
regional part of brain | 4.21e-17 | 46 |
neurectoderm | 2.54e-16 | 64 |
neural plate | 2.54e-16 | 64 |
presumptive neural plate | 2.54e-16 | 64 |
gray matter | 3.90e-16 | 34 |
anterior neural tube | 4.03e-16 | 40 |
regional part of forebrain | 1.54e-15 | 39 |
forebrain | 1.54e-15 | 39 |
future forebrain | 1.54e-15 | 39 |
ecto-epithelium | 3.49e-15 | 73 |
brain grey matter | 5.12e-14 | 29 |
regional part of telencephalon | 5.12e-14 | 29 |
telencephalon | 5.12e-14 | 29 |
pre-chordal neural plate | 2.33e-12 | 49 |
cerebral cortex | 3.19e-10 | 21 |
cerebral hemisphere | 3.19e-10 | 21 |
pallium | 3.19e-10 | 21 |
regional part of cerebral cortex | 1.35e-08 | 17 |
occipital lobe | 5.02e-07 | 10 |
visual cortex | 5.02e-07 | 10 |
neocortex | 5.02e-07 | 10 |