FFCP PHASE1:Mm9::chr11:97883908..97883985,-: Difference between revisions
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{{FFCP|EntrezGene=12295|HGNC=|MCL_coexpression_id=1|UniProt=A2A543,A2A545,Q8R3Z5,E9Q6K8,Q6DD95|association_with_transcript=0bp_to_ENSMUST00000017552,ENSMUST00000092736,ENSMUST00000103144,ENSMUST00000107562,ENSMUST00000168380,NM_001159319,NM_031173,NM_145121,uc007lff.2,uc007lfh.2,uc007lfi.2,uc011ydz.1_5end|description=CAGE_peak_1_at_Cacnb1_5end|id=chr11:97883908..97883985,-|ontology_enrichment_celltype=CL:0000117!5.48e-09!23;CL:0000337!5.48e-09!23;CL:0000540!2.28e-08!33;CL:0000047!2.28e-08!33;CL:0000031!2.28e-08!33;CL:0000404!2.28e-08!33;CL:0000393!4.76e-07!39;CL:0000211!4.76e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,5.20e-09,23;CL:0000337,5.20e-09,23;CL:0000540,2.17e-08,33;CL:0000047,2.17e-08,33;CL:0000031,2.17e-08,33;CL:0000404,2.17e-08,33;CL:0000393,4.58e-07,39;CL:0000211,4.58e-07,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!5.62e-17!73;UBERON:0005743!5.62e-17!73;UBERON:0000073!1.05e-15!75;UBERON:0001016!1.05e-15!75;UBERON:0002346!1.40e-15!71;UBERON:0003075!1.40e-15!71;UBERON:0007284!1.40e-15!71;UBERON:0001049!2.10e-15!52;UBERON:0005068!2.10e-15!52;UBERON:0006241!2.10e-15!52;UBERON:0007135!2.10e-15!52;UBERON:0004121!2.91e-15!102;UBERON:0000924!2.91e-15!102;UBERON:0006601!2.91e-15!102;UBERON:0002020!3.57e-15!34;UBERON:0000033!9.73e-15!63;UBERON:0000955!1.08e-14!50;UBERON:0006238!1.08e-14!50;UBERON:0002616!3.95e-14!49;UBERON:0003056!4.03e-14!49;UBERON:0003080!1.63e-13!40;UBERON:0002791!2.73e-13!29;UBERON:0003528!2.73e-13!29;UBERON:0001893!2.73e-13!29;UBERON:0002780!4.26e-13!39;UBERON:0001890!4.26e-13!39;UBERON:0006240!4.26e-13!39;UBERON:0000153!2.11e-12!94;UBERON:0007811!4.33e-11!86;UBERON:0000956!1.83e-09!21;UBERON:0001869!1.83e-09!21;UBERON:0000203!1.83e-09!21;UBERON:0002619!4.00e-08!17;UBERON:0002021!5.53e-08!10;UBERON:0000411!5.53e-08!10;UBERON:0001950!5.53e-08!10;UBERON:0000468!8.18e-07!333|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.05e-17,73;UBERON:0002346,1.99e-16,64;UBERON:0003075,1.99e-16,64;UBERON:0007284,1.99e-16,64;UBERON:0000073,3.83e-16,54;UBERON:0001016,9.49e-16,75;UBERON:0004121,1.55e-15,95;UBERON:0000924,1.55e-15,95;UBERON:0006601,1.55e-15,95;UBERON:0001049,1.91e-15,52;UBERON:0005068,1.91e-15,52;UBERON:0006241,1.91e-15,52;UBERON:0007135,1.91e-15,52;UBERON:0010371,2.02e-15,73;UBERON:0002020,3.25e-15,34;UBERON:0003056,3.69e-14,49;UBERON:0000955,9.42e-14,47;UBERON:0006238,9.42e-14,47;UBERON:0003080,1.50e-13,40;UBERON:0003528,2.51e-13,29;UBERON:0002791,2.51e-13,29;UBERON:0001893,2.51e-13,29;UBERON:0002616,3.40e-13,46;UBERON:0002780,3.93e-13,39;UBERON:0001890,3.93e-13,39;UBERON:0006240,3.93e-13,39;UBERON:0010314,5.65e-11,92;UBERON:0000956,1.73e-09,21;UBERON:0001869,1.73e-09,21;UBERON:0000203,1.73e-09,21;UBERON:0002619,3.82e-08,17;UBERON:0002021,5.29e-08,10;UBERON:0000411,5.29e-08,10;UBERON:0001950,5.29e-08,10|phase1_expression=6.56610273129655,0,0,0.30246421130683,0,0.839396359559449,0.467225281191051,14.4618122254565,4.22366166455,5.38348410540585,0.856089841127525,0.0797721589953364,13.353656934634,13.5501623749446,2.33176833270964,1.21485160433896,0,3.78554598429885,3.29074640653773,1.69755860719212,25.8531602059252,0.893618560807968,1.56719873483361,0.319984845586813,0,0,0.430761996159075,0,0,0,0,0,0.61506478758457,0,0,0,0,0.418531630736908,0,0,0,0,0,7.30201544258348,7.29913904780505,5.68994931701213,3.12956537739216,2.8343270329458,5.05278220289285,3.69416808241138,1.67983705950435,1.43752564364972,2.01339127269284,17.4086914082723,7.05796978199174,2.82985379639542,2.0057340795713,4.12537673821954,37.0239123373064,40.2033144246745,38.0298842103708,1.0165335962074,0.889294796111139,4.04954872776629,0.988866362566974,1.4209602298922,8.38880309451533,9.98967593836042,21.6711289724718,20.520902626417,20.8221711737868,30.8503063156108,37.1059148798711,19.1085646775328,18.4981759065196,13.7882817991503,25.3266526298594,26.4312789836339,28.5708151856613,45.3688829791867,55.8989502410723,42.1939830150976,24.5681039121215,23.6360296213306,35.9075882275504,31.5252586456824,31.8912564989991,38.7710847316625,1.28734528666413,1.73814588245607,1.73918693221007,0,0,0,0,0,9.69066498909088,2.04516387093669,1.55871602761721,2.12003744706204,2.67602497575693,0,2.54805239706646,0,0.216491041011214,0.253359865475099,0,2.96878087269556,12.4290184150642,4.75014845007439,6.41895709034703,11.2652226975492,9.22461989024234,4.22023393547343,8.46638691377075,2.13633205260448,0.988779870937496,3.61498392299779,2.65383165584962,71.5009476767549,16.5631138845295,8.24287930329878,1.86391761218122,11.1256702864388,11.1006754611131,1.53274233125155,0.599075622529601,0,1.39777249780371,37.2978692118009,100.192632017279,48.1256168592271,86.2168628153691,88.7332636936247,36.1551197533635,55.1620294430376,5.90668310331835,4.72746488318353,5.81262344397452,3.78795340595653,7.026503919986,11.4951052216736,11.884100567153,18.2352829581215,15.2401758098974,13.3238269096244,13.0245397138023,9.05461797586555,4.74249584452253,11.3463648100692,11.61277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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=12295 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=A2A543,A2A545,Q8R3Z5,E9Q6K8,Q6DD95 | |||
|association_with_transcript=0bp_to_ENSMUST00000017552,ENSMUST00000092736,ENSMUST00000103144,ENSMUST00000107562,ENSMUST00000168380,NM_001159319,NM_031173,NM_145121,uc007lff.2,uc007lfh.2,uc007lfi.2,uc011ydz.1_5end | |||
|cluster_id=chr11:97883908..97883985,- | |||
|description=CAGE_peak_1_at_Cacnb1_5end | |||
|id=chr11:97883908..97883985,- | |||
|ontology_enrichment_celltype=CL:0000117!5.48e-09!23;CL:0000337!5.48e-09!23;CL:0000540!2.28e-08!33;CL:0000047!2.28e-08!33;CL:0000031!2.28e-08!33;CL:0000404!2.28e-08!33;CL:0000393!4.76e-07!39;CL:0000211!4.76e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.20e-09,23;CL:0000337,5.20e-09,23;CL:0000540,2.17e-08,33;CL:0000047,2.17e-08,33;CL:0000031,2.17e-08,33;CL:0000404,2.17e-08,33;CL:0000393,4.58e-07,39;CL:0000211,4.58e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!5.62e-17!73;UBERON:0005743!5.62e-17!73;UBERON:0000073!1.05e-15!75;UBERON:0001016!1.05e-15!75;UBERON:0002346!1.40e-15!71;UBERON:0003075!1.40e-15!71;UBERON:0007284!1.40e-15!71;UBERON:0001049!2.10e-15!52;UBERON:0005068!2.10e-15!52;UBERON:0006241!2.10e-15!52;UBERON:0007135!2.10e-15!52;UBERON:0004121!2.91e-15!102;UBERON:0000924!2.91e-15!102;UBERON:0006601!2.91e-15!102;UBERON:0002020!3.57e-15!34;UBERON:0000033!9.73e-15!63;UBERON:0000955!1.08e-14!50;UBERON:0006238!1.08e-14!50;UBERON:0002616!3.95e-14!49;UBERON:0003056!4.03e-14!49;UBERON:0003080!1.63e-13!40;UBERON:0002791!2.73e-13!29;UBERON:0003528!2.73e-13!29;UBERON:0001893!2.73e-13!29;UBERON:0002780!4.26e-13!39;UBERON:0001890!4.26e-13!39;UBERON:0006240!4.26e-13!39;UBERON:0000153!2.11e-12!94;UBERON:0007811!4.33e-11!86;UBERON:0000956!1.83e-09!21;UBERON:0001869!1.83e-09!21;UBERON:0000203!1.83e-09!21;UBERON:0002619!4.00e-08!17;UBERON:0002021!5.53e-08!10;UBERON:0000411!5.53e-08!10;UBERON:0001950!5.53e-08!10;UBERON:0000468!8.18e-07!333 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,5.05e-17,73;UBERON:0002346,1.99e-16,64;UBERON:0003075,1.99e-16,64;UBERON:0007284,1.99e-16,64;UBERON:0000073,3.83e-16,54;UBERON:0001016,9.49e-16,75;UBERON:0004121,1.55e-15,95;UBERON:0000924,1.55e-15,95;UBERON:0006601,1.55e-15,95;UBERON:0001049,1.91e-15,52;UBERON:0005068,1.91e-15,52;UBERON:0006241,1.91e-15,52;UBERON:0007135,1.91e-15,52;UBERON:0010371,2.02e-15,73;UBERON:0002020,3.25e-15,34;UBERON:0003056,3.69e-14,49;UBERON:0000955,9.42e-14,47;UBERON:0006238,9.42e-14,47;UBERON:0003080,1.50e-13,40;UBERON:0003528,2.51e-13,29;UBERON:0002791,2.51e-13,29;UBERON:0001893,2.51e-13,29;UBERON:0002616,3.40e-13,46;UBERON:0002780,3.93e-13,39;UBERON:0001890,3.93e-13,39;UBERON:0006240,3.93e-13,39;UBERON:0010314,5.65e-11,92;UBERON:0000956,1.73e-09,21;UBERON:0001869,1.73e-09,21;UBERON:0000203,1.73e-09,21;UBERON:0002619,3.82e-08,17;UBERON:0002021,5.29e-08,10;UBERON:0000411,5.29e-08,10;UBERON:0001950,5.29e-08,10 | |||
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| |||
|short_description=p1@Cacnb1 | |||
}} |
Latest revision as of 02:43, 26 September 2015
Short description: | p1@Cacnb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Cacnb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000017552, ENSMUST00000092736, ENSMUST00000103144, ENSMUST00000107562, ENSMUST00000168380, NM_001159319, NM_031173, NM_145121, uc007lff.2, uc007lfh.2, uc007lfi.2, uc011ydz.1_5end |
EntrezGene: | Cacnb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.20e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.20e-09 | 23 |
neuron | 2.17e-08 | 33 |
neuronal stem cell | 2.17e-08 | 33 |
neuroblast | 2.17e-08 | 33 |
electrically signaling cell | 2.17e-08 | 33 |
electrically responsive cell | 4.58e-07 | 39 |
electrically active cell | 4.58e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 5.05e-17 | 73 |
neurectoderm | 1.99e-16 | 64 |
neural plate | 1.99e-16 | 64 |
presumptive neural plate | 1.99e-16 | 64 |
regional part of nervous system | 3.83e-16 | 54 |
nervous system | 9.49e-16 | 75 |
ectoderm-derived structure | 1.55e-15 | 95 |
ectoderm | 1.55e-15 | 95 |
presumptive ectoderm | 1.55e-15 | 95 |
neural tube | 1.91e-15 | 52 |
neural rod | 1.91e-15 | 52 |
future spinal cord | 1.91e-15 | 52 |
neural keel | 1.91e-15 | 52 |
ecto-epithelium | 2.02e-15 | 73 |
gray matter | 3.25e-15 | 34 |
pre-chordal neural plate | 3.69e-14 | 49 |
brain | 9.42e-14 | 47 |
future brain | 9.42e-14 | 47 |
anterior neural tube | 1.50e-13 | 40 |
brain grey matter | 2.51e-13 | 29 |
regional part of telencephalon | 2.51e-13 | 29 |
telencephalon | 2.51e-13 | 29 |
regional part of brain | 3.40e-13 | 46 |
regional part of forebrain | 3.93e-13 | 39 |
forebrain | 3.93e-13 | 39 |
future forebrain | 3.93e-13 | 39 |
structure with developmental contribution from neural crest | 5.65e-11 | 92 |
cerebral cortex | 1.73e-09 | 21 |
cerebral hemisphere | 1.73e-09 | 21 |
pallium | 1.73e-09 | 21 |
regional part of cerebral cortex | 3.82e-08 | 17 |
occipital lobe | 5.29e-08 | 10 |
visual cortex | 5.29e-08 | 10 |
neocortex | 5.29e-08 | 10 |