FFCP PHASE1:Mm9::chr17:25864671..25864742,+: Difference between revisions
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{{FFCP|EntrezGene=106707|HGNC=|MCL_coexpression_id=1|UniProt=Q8VCZ8|association_with_transcript=0bp_to_ENSMUST00000047273,NM_028009,uc008bbl.1,uc008bbm.1_5end|description=CAGE_peak_1_at_Rpusd1_5end|id=chr17:25864671..25864742,+|ontology_enrichment_celltype=CL:0000055!4.77e-07!50;CL:0002319!8.30e-07!43|ontology_enrichment_celltype_v019_2=CL:0002319,8.30e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!2.89e-21!75;UBERON:0001016!2.89e-21!75;UBERON:0001017!3.06e-21!73;UBERON:0005743!3.06e-21!73;UBERON:0002346!5.28e-21!71;UBERON:0003075!5.28e-21!71;UBERON:0007284!5.28e-21!71;UBERON:0000955!5.09e-20!50;UBERON:0006238!5.09e-20!50;UBERON:0001049!8.20e-20!52;UBERON:0005068!8.20e-20!52;UBERON:0006241!8.20e-20!52;UBERON:0007135!8.20e-20!52;UBERON:0002616!1.48e-19!49;UBERON:0004121!2.99e-19!102;UBERON:0000924!2.99e-19!102;UBERON:0006601!2.99e-19!102;UBERON:0000033!5.41e-18!63;UBERON:0003080!2.83e-14!40;UBERON:0002780!1.20e-13!39;UBERON:0001890!1.20e-13!39;UBERON:0006240!1.20e-13!39;UBERON:0003056!1.40e-13!49;UBERON:0002020!2.60e-12!34;UBERON:0002791!4.44e-11!29;UBERON:0003528!4.44e-11!29;UBERON:0001893!4.44e-11!29;UBERON:0000153!6.60e-09!94;UBERON:0007811!2.20e-08!86;UBERON:0000956!3.67e-08!21;UBERON:0001869!3.67e-08!21;UBERON:0000203!3.67e-08!21;UBERON:0002619!5.40e-08!17;UBERON:0002021!1.76e-07!10;UBERON:0000411!1.76e-07!10;UBERON:0001950!1.76e-07!10|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.89e-21,75;UBERON:0001017,3.06e-21,73;UBERON:0000073,5.94e-21,54;UBERON:0001049,8.20e-20,52;UBERON:0005068,8.20e-20,52;UBERON:0006241,8.20e-20,52;UBERON:0007135,8.20e-20,52;UBERON:0002346,5.74e-19,64;UBERON:0003075,5.74e-19,64;UBERON:0007284,5.74e-19,64;UBERON:0000955,3.03e-18,47;UBERON:0006238,3.03e-18,47;UBERON:0002616,8.64e-18,46;UBERON:0004121,4.18e-17,95;UBERON:0000924,4.18e-17,95;UBERON:0006601,4.18e-17,95;UBERON:0010371,3.62e-15,73;UBERON:0003080,2.83e-14,40;UBERON:0010314,5.06e-14,92;UBERON:0002780,1.20e-13,39;UBERON:0001890,1.20e-13,39;UBERON:0006240,1.20e-13,39;UBERON:0003056,1.40e-13,49;UBERON:0002020,2.60e-12,34;UBERON:0003528,4.44e-11,29;UBERON:0002791,4.44e-11,29;UBERON:0001893,4.44e-11,29;UBERON:0000956,3.67e-08,21;UBERON:0001869,3.67e-08,21;UBERON:0000203,3.67e-08,21;UBERON:0002619,5.40e-08,17;UBERON:0002021,1.76e-07,10;UBERON:0000411,1.76e-07,10;UBERON:0001950,1.76e-07,10|phase1_expression=10.4096750618116,19.1936474201649,11.8299802241279,1.81478526784098,1.00179145989269,10.7442734023609,11.9142446703718,5.55230290798778,0.563154888606667,0.70219357896598,1.54096171402954,2.6324812468461,4.10881751834894,3.58423649917889,4.33042690360362,5.26435695213547,6.29605690315332,3.78554598429885,5.34746291062381,3.39511721438424,10.5453679787327,8.43973085207525,9.40319240900167,12.1594241322989,11.6998733344257,16.6527269593356,9.04600191934057,18.5305260109865,8.93110071444957,4.53654233567875,10.199603490144,14.6057054895715,9.22597181376855,15.8481681015439,8.08784535303569,7.31432439577366,9.18762103180661,4.60384793810598,3.906676722619,8.37637990358077,2.35292595212406,2.73218193983378,7.2826552954673,17.1219672446785,17.9437168258541,14.5001934207728,39.90195856175,14.6076854774899,13.6205433295373,10.1103547518627,12.4587915246573,5.75010257459886,3.35565212115473,2.17608642603403,2.01656279485478,7.46052364504246,8.02293631828519,8.76642556871652,13.5552028775931,13.7537654610729,10.1413024560989,15.9256930072492,20.4537803105562,17.997994345628,19.7773272513395,31.9716051725745,20.6724076257699,21.1320067926855,8.50254820929517,8.77538599155989,8.83364837675805,10.2834354385369,17.4486147351775,10.779190330916,10.4471563409878,7.35375029288017,24.2254938198655,21.4514727983115,22.2729473221553,8.44072241473241,10.6125666578795,10.939180781692,30.1517638921491,27.0126052815206,31.0180442986925,12.374400589894,12.5287079103211,9.87917062874093,10.677393259979,7.93501381121248,6.95674772884027,4.30211938490693,0.679971333707751,6.47643829965381,1.29955283489534,1.34408066129201,5.19644354487482,18.9177658061644,9.61208217030615,14.8402621294343,7.32385782838739,7.69958864485907,2.54805239706646,0,6.71122227134764,6.08063677140237,4.54972000513305,2.74041311325744,1.8125651855302,13.0629082377046,11.450031566565,9.74289530598852,13.1450833435953,12.8114244469729,10.5829836422134,11.4356598110005,11.8653584512499,4.62717942143717,6.19227386364912,6.95597454773859,7.06692859073259,5.81850303762267,1.86391761218122,21.3729981818429,21.5730108017859,5.62005521458901,8.62668896442626,8.39863823390771,8.51370521389534,33.2535219478706,44.8350590762254,15.2041766056566,43.8037286884537,35.0330176542553,26.3890816590641,28.3922210368576,10.8968119319838,8.45967400148633,9.09801930361229,4.62972082950243,12.2313216384941,13.3343220571414,10.0834792690996,8.74087943447147,9.5251098811859,11.914575986491,8.24575176125614,5.95017752699736,10.7783996466421,10.0226222488944,10.7330185740009,10.7405908889512,11.6779844674751,8.70630416305416,9.4659782747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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=106707 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q8VCZ8 | |||
|association_with_transcript=0bp_to_ENSMUST00000047273,NM_028009,uc008bbl.1,uc008bbm.1_5end | |||
|cluster_id=chr17:25864671..25864742,+ | |||
|description=CAGE_peak_1_at_Rpusd1_5end | |||
|id=chr17:25864671..25864742,+ | |||
|ontology_enrichment_celltype=CL:0000055!4.77e-07!50;CL:0002319!8.30e-07!43 | |||
|ontology_enrichment_celltype_v019_2=CL:0002319,8.30e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!2.89e-21!75;UBERON:0001016!2.89e-21!75;UBERON:0001017!3.06e-21!73;UBERON:0005743!3.06e-21!73;UBERON:0002346!5.28e-21!71;UBERON:0003075!5.28e-21!71;UBERON:0007284!5.28e-21!71;UBERON:0000955!5.09e-20!50;UBERON:0006238!5.09e-20!50;UBERON:0001049!8.20e-20!52;UBERON:0005068!8.20e-20!52;UBERON:0006241!8.20e-20!52;UBERON:0007135!8.20e-20!52;UBERON:0002616!1.48e-19!49;UBERON:0004121!2.99e-19!102;UBERON:0000924!2.99e-19!102;UBERON:0006601!2.99e-19!102;UBERON:0000033!5.41e-18!63;UBERON:0003080!2.83e-14!40;UBERON:0002780!1.20e-13!39;UBERON:0001890!1.20e-13!39;UBERON:0006240!1.20e-13!39;UBERON:0003056!1.40e-13!49;UBERON:0002020!2.60e-12!34;UBERON:0002791!4.44e-11!29;UBERON:0003528!4.44e-11!29;UBERON:0001893!4.44e-11!29;UBERON:0000153!6.60e-09!94;UBERON:0007811!2.20e-08!86;UBERON:0000956!3.67e-08!21;UBERON:0001869!3.67e-08!21;UBERON:0000203!3.67e-08!21;UBERON:0002619!5.40e-08!17;UBERON:0002021!1.76e-07!10;UBERON:0000411!1.76e-07!10;UBERON:0001950!1.76e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,2.89e-21,75;UBERON:0001017,3.06e-21,73;UBERON:0000073,5.94e-21,54;UBERON:0001049,8.20e-20,52;UBERON:0005068,8.20e-20,52;UBERON:0006241,8.20e-20,52;UBERON:0007135,8.20e-20,52;UBERON:0002346,5.74e-19,64;UBERON:0003075,5.74e-19,64;UBERON:0007284,5.74e-19,64;UBERON:0000955,3.03e-18,47;UBERON:0006238,3.03e-18,47;UBERON:0002616,8.64e-18,46;UBERON:0004121,4.18e-17,95;UBERON:0000924,4.18e-17,95;UBERON:0006601,4.18e-17,95;UBERON:0010371,3.62e-15,73;UBERON:0003080,2.83e-14,40;UBERON:0010314,5.06e-14,92;UBERON:0002780,1.20e-13,39;UBERON:0001890,1.20e-13,39;UBERON:0006240,1.20e-13,39;UBERON:0003056,1.40e-13,49;UBERON:0002020,2.60e-12,34;UBERON:0003528,4.44e-11,29;UBERON:0002791,4.44e-11,29;UBERON:0001893,4.44e-11,29;UBERON:0000956,3.67e-08,21;UBERON:0001869,3.67e-08,21;UBERON:0000203,3.67e-08,21;UBERON:0002619,5.40e-08,17;UBERON:0002021,1.76e-07,10;UBERON:0000411,1.76e-07,10;UBERON:0001950,1.76e-07,10 | |||
|phase1_expression=10.4096750618116,19.1936474201649,11.8299802241279,1.81478526784098,1.00179145989269,10.7442734023609,11.9142446703718,5.55230290798778,0.563154888606667,0.70219357896598,1.54096171402954,2.6324812468461,4.10881751834894,3.58423649917889,4.33042690360362,5.26435695213547,6.29605690315332,3.78554598429885,5.34746291062381,3.39511721438424,10.5453679787327,8.43973085207525,9.40319240900167,12.1594241322989,11.6998733344257,16.6527269593356,9.04600191934057,18.5305260109865,8.93110071444957,4.53654233567875,10.199603490144,14.6057054895715,9.22597181376855,15.8481681015439,8.08784535303569,7.31432439577366,9.18762103180661,4.60384793810598,3.906676722619,8.37637990358077,2.35292595212406,2.73218193983378,7.2826552954673,17.1219672446785,17.9437168258541,14.5001934207728,39.90195856175,14.6076854774899,13.6205433295373,10.1103547518627,12.4587915246573,5.75010257459886,3.35565212115473,2.17608642603403,2.01656279485478,7.46052364504246,8.02293631828519,8.76642556871652,13.5552028775931,13.7537654610729,10.1413024560989,15.9256930072492,20.4537803105562,17.997994345628,19.7773272513395,31.9716051725745,20.6724076257699,21.1320067926855,8.50254820929517,8.77538599155989,8.83364837675805,10.2834354385369,17.4486147351775,10.779190330916,10.4471563409878,7.35375029288017,24.2254938198655,21.4514727983115,22.2729473221553,8.44072241473241,10.6125666578795,10.939180781692,30.1517638921491,27.0126052815206,31.0180442986925,12.374400589894,12.5287079103211,9.87917062874093,10.677393259979,7.93501381121248,6.95674772884027,4.30211938490693,0.679971333707751,6.47643829965381,1.29955283489534,1.34408066129201,5.19644354487482,18.9177658061644,9.61208217030615,14.8402621294343,7.32385782838739,7.69958864485907,2.54805239706646,0,6.71122227134764,6.08063677140237,4.54972000513305,2.74041311325744,1.8125651855302,13.0629082377046,11.450031566565,9.74289530598852,13.1450833435953,12.8114244469729,10.5829836422134,11.4356598110005,11.8653584512499,4.62717942143717,6.19227386364912,6.95597454773859,7.06692859073259,5.81850303762267,1.86391761218122,21.3729981818429,21.5730108017859,5.62005521458901,8.62668896442626,8.39863823390771,8.51370521389534,33.2535219478706,44.8350590762254,15.2041766056566,43.8037286884537,35.0330176542553,26.3890816590641,28.3922210368576,10.8968119319838,8.45967400148633,9.09801930361229,4.62972082950243,12.2313216384941,13.3343220571414,10.0834792690996,8.74087943447147,9.5251098811859,11.914575986491,8.24575176125614,5.95017752699736,10.7783996466421,10.0226222488944,10.7330185740009,10.7405908889512,11.6779844674751,8.70630416305416,9.4659782747654,9.75267907410617,11.937624184325,9.00717674901503,6.81992398549422,5.79952163099405,8.44293815931946,7.92273070428465,6.62885259638589,7.87056926989615,5.707883176833,8.60375595576509,5.09719462659276,5.3712057488898,5.43047504714485,5.74586124276833,4.70199095365963,4.82459958503597,7.02560368931362,6.03928884421673,43.3197294042102,9.77593817603202,3.63460661282178,3.17340679996253,9.59797127408553,11.6118335930219,7.34544529535932,7.66397393568702,5.78182913996663,8.56015317506516,6.64340686162316,7.24675400785648,6.28338022000674,10.1467800740987,7.60359939764569,4.49409704327111,4.32276099749388,4.97853183135918,11.7594098590911,6.16941968092536,10.1436962105772,6.31319116320474,5.43066964069352,6.52263124979963,7.01925562079256,6.4948465111025,7.53593893638599,6.66344685177723,3.55743152504579,6.34011401721157,6.6830058338489,8.09503604585473,5.88294352026658,6.02942899381042,6.3656462945355,4.89083433666378,3.56697498905078,4.11842119782122,1.43768206527355,3.34926852901653,4.99260276983297,3.78868316920668,3.22915344339442,1.92977408545347,8.86815312799702,10.0430448238357,10.7556884451737,9.16623463186016,9.62230017982859,13.4005005953453,13.0924002487308,10.1469496886055,7.88175720530955,8.858587585951,8.29164797018933,9.66793556822854,8.11619414769709,7.37710198765709,4.52373851817817,5.98296252200581,5.4094070032094,4.13905119457099,38.2110404170945,29.1857099614586,19.8361283905777,7.06918596172244,8.83423014365519,10.9322848403059,7.53981892064796,8.84184552424442,7.12955757063661,5.66153061577665,8.09621403349789,7.01414058987149,5.53402889125133,15.1021018718249,9.79386587937053,15.4917075190512,13.6825045857004,7.58862565673663,2.65490276679926,13.8384962608339,9.97667737983678,7.73280826999182,9.7449624650655,8.60818414242997,9.04499026088774,6.5436071305951,10.6949213515416,7.9009189483954,8.4334886859999,3.09406629744561,14.6389030474129,10.8036656418786,13.712020480972,9.43082954139006,7.62563004661776,10.5237602385222,10.86023535974,17.9634319977614,9.62154003061212,8.26145076368899,7.71849393192367,4.61681508236144,5.8127193610526,6.63442174209714,6.68485126417564,8.69946768648825,4.66369338607761,30.5951748317341,5.98048082792484,8.46186158649212,5.37064129372164,5.46268525313604,4.51090951479383,4.80434163733698,7.64902934972349,8.81694149639045,7.60099855924331,2.86401185404534,14.2351197111511,11.38589015910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| |||
|short_description=p1@Rpusd1 | |||
}} |
Latest revision as of 02:27, 26 September 2015
Short description: | p1@Rpusd1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rpusd1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 0bp_to_ENSMUST00000047273, NM_028009, uc008bbl.1, uc008bbm.1_5end |
EntrezGene: | Rpusd1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 8.30e-07 | 43 |
Ontology term | p-value | n |
---|---|---|
nervous system | 2.89e-21 | 75 |
central nervous system | 3.06e-21 | 73 |
regional part of nervous system | 5.94e-21 | 54 |
neural tube | 8.20e-20 | 52 |
neural rod | 8.20e-20 | 52 |
future spinal cord | 8.20e-20 | 52 |
neural keel | 8.20e-20 | 52 |
neurectoderm | 5.74e-19 | 64 |
neural plate | 5.74e-19 | 64 |
presumptive neural plate | 5.74e-19 | 64 |
brain | 3.03e-18 | 47 |
future brain | 3.03e-18 | 47 |
regional part of brain | 8.64e-18 | 46 |
ectoderm-derived structure | 4.18e-17 | 95 |
ectoderm | 4.18e-17 | 95 |
presumptive ectoderm | 4.18e-17 | 95 |
ecto-epithelium | 3.62e-15 | 73 |
anterior neural tube | 2.83e-14 | 40 |
structure with developmental contribution from neural crest | 5.06e-14 | 92 |
regional part of forebrain | 1.20e-13 | 39 |
forebrain | 1.20e-13 | 39 |
future forebrain | 1.20e-13 | 39 |
pre-chordal neural plate | 1.40e-13 | 49 |
gray matter | 2.60e-12 | 34 |
brain grey matter | 4.44e-11 | 29 |
regional part of telencephalon | 4.44e-11 | 29 |
telencephalon | 4.44e-11 | 29 |
cerebral cortex | 3.67e-08 | 21 |
cerebral hemisphere | 3.67e-08 | 21 |
pallium | 3.67e-08 | 21 |
regional part of cerebral cortex | 5.40e-08 | 17 |
occipital lobe | 1.76e-07 | 10 |
visual cortex | 1.76e-07 | 10 |
neocortex | 1.76e-07 | 10 |