FFCP PHASE1:Mm9::chr19:60018977..60019003,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74998 | |EntrezGene=74998 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=884 | |MCL_coexpression_id=884 | ||
|TSSclassifier=NA | |||
|UniProt=G3XA57 | |UniProt=G3XA57 | ||
|association_with_transcript=-74bp_to_ENSMUST00000170819_5end | |association_with_transcript=-74bp_to_ENSMUST00000170819_5end | ||
|cluster_id=chr19:60018977..60019003,- | |||
|description=CAGE_peak_4_at_Rab11fip2_5end | |description=CAGE_peak_4_at_Rab11fip2_5end | ||
|id=chr19:60018977..60019003,- | |id=chr19:60018977..60019003,- | ||
|ontology_enrichment_celltype= | |ontology_enrichment_celltype= | ||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!2.70e-10!63;UBERON:0002020!3.52e-10!34;UBERON:0000955!3.69e-10!50;UBERON:0006238!3.69e-10!50;UBERON:0002616!7.75e-10!49;UBERON:0003056!1.12e-09!49;UBERON:0002791!1.21e-09!29;UBERON:0003528!1.21e-09!29;UBERON:0001893!1.21e-09!29;UBERON:0001017!1.33e-09!73;UBERON:0005743!1.33e-09!73;UBERON:0001049!1.57e-09!52;UBERON:0005068!1.57e-09!52;UBERON:0006241!1.57e-09!52;UBERON:0007135!1.57e-09!52;UBERON:0002346!2.85e-09!71;UBERON:0003075!2.85e-09!71;UBERON:0007284!2.85e-09!71;UBERON:0003080!2.98e-09!40;UBERON:0002780!3.92e-09!39;UBERON:0001890!3.92e-09!39;UBERON:0006240!3.92e-09!39;UBERON:0000073!4.82e-09!75;UBERON:0001016!4.82e-09!75;UBERON:0004121!5.73e-09!102;UBERON:0000924!5.73e-09!102;UBERON:0006601!5.73e-09!102;UBERON:0000956!1.90e-08!21;UBERON:0001869!1.90e-08!21;UBERON:0000203!1.90e-08!21;UBERON:0002021!4.53e-08!10;UBERON:0000411!4.53e-08!10;UBERON:0001950!4.53e-08!10;UBERON:0000475!5.17e-08!200;UBERON:0004111!2.21e-07!122;UBERON:0000153!3.19e-07!94;UBERON:0007811!3.24e-07!86;UBERON:0002619!3.46e-07!17;UBERON:0000025!3.61e-07!114 | |ontology_enrichment_uberon=UBERON:0000033!2.70e-10!63;UBERON:0002020!3.52e-10!34;UBERON:0000955!3.69e-10!50;UBERON:0006238!3.69e-10!50;UBERON:0002616!7.75e-10!49;UBERON:0003056!1.12e-09!49;UBERON:0002791!1.21e-09!29;UBERON:0003528!1.21e-09!29;UBERON:0001893!1.21e-09!29;UBERON:0001017!1.33e-09!73;UBERON:0005743!1.33e-09!73;UBERON:0001049!1.57e-09!52;UBERON:0005068!1.57e-09!52;UBERON:0006241!1.57e-09!52;UBERON:0007135!1.57e-09!52;UBERON:0002346!2.85e-09!71;UBERON:0003075!2.85e-09!71;UBERON:0007284!2.85e-09!71;UBERON:0003080!2.98e-09!40;UBERON:0002780!3.92e-09!39;UBERON:0001890!3.92e-09!39;UBERON:0006240!3.92e-09!39;UBERON:0000073!4.82e-09!75;UBERON:0001016!4.82e-09!75;UBERON:0004121!5.73e-09!102;UBERON:0000924!5.73e-09!102;UBERON:0006601!5.73e-09!102;UBERON:0000956!1.90e-08!21;UBERON:0001869!1.90e-08!21;UBERON:0000203!1.90e-08!21;UBERON:0002021!4.53e-08!10;UBERON:0000411!4.53e-08!10;UBERON:0001950!4.53e-08!10;UBERON:0000475!5.17e-08!200;UBERON:0004111!2.21e-07!122;UBERON:0000153!3.19e-07!94;UBERON:0007811!3.24e-07!86;UBERON:0002619!3.46e-07!17;UBERON:0000025!3.61e-07!114 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,3.88e-12,34;UBERON:0000073,1.64e-11,54;UBERON:0003528,2.61e-11,29;UBERON:0002791,2.61e-11,29;UBERON:0001893,2.61e-11,29;UBERON:0002021,9.29e-11,10;UBERON:0000411,9.29e-11,10;UBERON:0001950,9.29e-11,10;UBERON:0000956,3.30e-10,21;UBERON:0001869,3.30e-10,21;UBERON:0000203,3.30e-10,21;UBERON:0001049,3.33e-10,52;UBERON:0005068,3.33e-10,52;UBERON:0006241,3.33e-10,52;UBERON:0007135,3.33e-10,52;UBERON:0002346,9.50e-10,64;UBERON:0003075,9.50e-10,64;UBERON:0007284,9.50e-10,64;UBERON:0003080,9.64e-10,40;UBERON:0003056,1.30e-09,49;UBERON:0002780,1.44e-09,39;UBERON:0001890,1.44e-09,39;UBERON:0006240,1.44e-09,39;UBERON:0001017,3.69e-09,73;UBERON:0000955,3.91e-09,47;UBERON:0006238,3.91e-09,47;UBERON:0002616,9.80e-09,46;UBERON:0001016,1.45e-08,75;UBERON:0002619,1.95e-08,17;UBERON:0010371,1.63e-07,73;UBERON:0004111,2.02e-07,122;UBERON:0004121,2.39e-07,95;UBERON:0000924,2.39e-07,95;UBERON:0006601,2.39e-07,95;UBERON:0000025,2.44e-07,114 | |||
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| ||
|short_description=p4@Rab11fip2 | |short_description=p4@Rab11fip2 | ||
}} | }} |
Latest revision as of 02:13, 26 September 2015
Short description: | p4@Rab11fip2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Rab11fip2_5end |
Coexpression cluster: | MCL_coexpression_mm9:884 |
Association with transcript: | -74bp_to_ENSMUST00000170819_5end |
EntrezGene: | Rab11fip2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
gray matter | 3.88e-12 | 34 |
regional part of nervous system | 1.64e-11 | 54 |
brain grey matter | 2.61e-11 | 29 |
regional part of telencephalon | 2.61e-11 | 29 |
telencephalon | 2.61e-11 | 29 |
occipital lobe | 9.29e-11 | 10 |
visual cortex | 9.29e-11 | 10 |
neocortex | 9.29e-11 | 10 |
cerebral cortex | 3.30e-10 | 21 |
cerebral hemisphere | 3.30e-10 | 21 |
pallium | 3.30e-10 | 21 |
neural tube | 3.33e-10 | 52 |
neural rod | 3.33e-10 | 52 |
future spinal cord | 3.33e-10 | 52 |
neural keel | 3.33e-10 | 52 |
neurectoderm | 9.50e-10 | 64 |
neural plate | 9.50e-10 | 64 |
presumptive neural plate | 9.50e-10 | 64 |
anterior neural tube | 9.64e-10 | 40 |
pre-chordal neural plate | 1.30e-09 | 49 |
regional part of forebrain | 1.44e-09 | 39 |
forebrain | 1.44e-09 | 39 |
future forebrain | 1.44e-09 | 39 |
central nervous system | 3.69e-09 | 73 |
brain | 3.91e-09 | 47 |
future brain | 3.91e-09 | 47 |
regional part of brain | 9.80e-09 | 46 |
nervous system | 1.45e-08 | 75 |
regional part of cerebral cortex | 1.95e-08 | 17 |
ecto-epithelium | 1.63e-07 | 73 |
anatomical conduit | 2.02e-07 | 122 |
ectoderm-derived structure | 2.39e-07 | 95 |
ectoderm | 2.39e-07 | 95 |
presumptive ectoderm | 2.39e-07 | 95 |
tube | 2.44e-07 | 114 |