FFCP PHASE1:Mm9::chr9:103014071..103014196,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=270192 | |EntrezGene=270192 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=P61294,Q0PD53,Q0PD54 | |UniProt=P61294,Q0PD53,Q0PD54 | ||
|association_with_transcript=-207bp_to_ENSMUST00000035155,NM_173781,uc009rgf.1_5end | |association_with_transcript=-207bp_to_ENSMUST00000035155,NM_173781,uc009rgf.1_5end | ||
|cluster_id=chr9:103014071..103014196,+ | |||
|description=CAGE_peak_1_at_Rab6b_5end | |description=CAGE_peak_1_at_Rab6b_5end | ||
|id=chr9:103014071..103014196,+ | |id=chr9:103014071..103014196,+ | ||
|ontology_enrichment_celltype=CL:0000117!6.38e-13!23;CL:0000337!6.38e-13!23;CL:0000540!2.15e-12!33;CL:0000047!2.15e-12!33;CL:0000031!2.15e-12!33;CL:0000404!2.15e-12!33;CL:0000393!4.45e-09!39;CL:0000211!4.45e-09!39;CL:0002319!3.91e-08!43;CL:0000221!4.60e-08!44;CL:0000133!4.60e-08!44 | |ontology_enrichment_celltype=CL:0000117!6.38e-13!23;CL:0000337!6.38e-13!23;CL:0000540!2.15e-12!33;CL:0000047!2.15e-12!33;CL:0000031!2.15e-12!33;CL:0000404!2.15e-12!33;CL:0000393!4.45e-09!39;CL:0000211!4.45e-09!39;CL:0002319!3.91e-08!43;CL:0000221!4.60e-08!44;CL:0000133!4.60e-08!44 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,5.85e-13,23;CL:0000337,5.85e-13,23;CL:0000540,1.98e-12,33;CL:0000047,1.98e-12,33;CL:0000031,1.98e-12,33;CL:0000404,1.98e-12,33;CL:0000393,5.89e-09,39;CL:0000211,5.89e-09,39;CL:0002319,3.72e-08,43;CL:0000221,4.38e-08,44;CL:0000133,4.38e-08,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!3.35e-23!73;UBERON:0005743!3.35e-23!73;UBERON:0000073!1.22e-22!75;UBERON:0001016!1.22e-22!75;UBERON:0004121!1.28e-22!102;UBERON:0000924!1.28e-22!102;UBERON:0006601!1.28e-22!102;UBERON:0002346!5.06e-22!71;UBERON:0003075!5.06e-22!71;UBERON:0007284!5.06e-22!71;UBERON:0000033!2.19e-20!63;UBERON:0001049!7.62e-20!52;UBERON:0005068!7.62e-20!52;UBERON:0006241!7.62e-20!52;UBERON:0007135!7.62e-20!52;UBERON:0000955!1.17e-18!50;UBERON:0006238!1.17e-18!50;UBERON:0002616!4.80e-18!49;UBERON:0003056!5.03e-18!49;UBERON:0007811!2.37e-17!86;UBERON:0002020!5.22e-17!34;UBERON:0000153!3.91e-16!94;UBERON:0003080!9.06e-16!40;UBERON:0002780!3.13e-15!39;UBERON:0001890!3.13e-15!39;UBERON:0006240!3.13e-15!39;UBERON:0002791!5.70e-14!29;UBERON:0003528!5.70e-14!29;UBERON:0001893!5.70e-14!29;UBERON:0000956!6.81e-10!21;UBERON:0001869!6.81e-10!21;UBERON:0000203!6.81e-10!21;UBERON:0002021!4.19e-08!10;UBERON:0000411!4.19e-08!10;UBERON:0001950!4.19e-08!10;UBERON:0002619!5.45e-08!17;UBERON:0000468!9.62e-07!333 | |ontology_enrichment_uberon=UBERON:0001017!3.35e-23!73;UBERON:0005743!3.35e-23!73;UBERON:0000073!1.22e-22!75;UBERON:0001016!1.22e-22!75;UBERON:0004121!1.28e-22!102;UBERON:0000924!1.28e-22!102;UBERON:0006601!1.28e-22!102;UBERON:0002346!5.06e-22!71;UBERON:0003075!5.06e-22!71;UBERON:0007284!5.06e-22!71;UBERON:0000033!2.19e-20!63;UBERON:0001049!7.62e-20!52;UBERON:0005068!7.62e-20!52;UBERON:0006241!7.62e-20!52;UBERON:0007135!7.62e-20!52;UBERON:0000955!1.17e-18!50;UBERON:0006238!1.17e-18!50;UBERON:0002616!4.80e-18!49;UBERON:0003056!5.03e-18!49;UBERON:0007811!2.37e-17!86;UBERON:0002020!5.22e-17!34;UBERON:0000153!3.91e-16!94;UBERON:0003080!9.06e-16!40;UBERON:0002780!3.13e-15!39;UBERON:0001890!3.13e-15!39;UBERON:0006240!3.13e-15!39;UBERON:0002791!5.70e-14!29;UBERON:0003528!5.70e-14!29;UBERON:0001893!5.70e-14!29;UBERON:0000956!6.81e-10!21;UBERON:0001869!6.81e-10!21;UBERON:0000203!6.81e-10!21;UBERON:0002021!4.19e-08!10;UBERON:0000411!4.19e-08!10;UBERON:0001950!4.19e-08!10;UBERON:0002619!5.45e-08!17;UBERON:0000468!9.62e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.84e-23,73;UBERON:0004121,8.04e-23,95;UBERON:0000924,8.04e-23,95;UBERON:0006601,8.04e-23,95;UBERON:0002346,8.29e-23,64;UBERON:0003075,8.29e-23,64;UBERON:0007284,8.29e-23,64;UBERON:0001016,1.04e-22,75;UBERON:0000073,3.04e-21,54;UBERON:0001049,6.62e-20,52;UBERON:0005068,6.62e-20,52;UBERON:0006241,6.62e-20,52;UBERON:0007135,6.62e-20,52;UBERON:0010371,1.68e-19,73;UBERON:0003056,4.44e-18,49;UBERON:0002020,4.64e-17,34;UBERON:0000955,7.60e-17,47;UBERON:0006238,7.60e-17,47;UBERON:0002616,3.02e-16,46;UBERON:0003080,8.13e-16,40;UBERON:0002780,2.82e-15,39;UBERON:0001890,2.82e-15,39;UBERON:0006240,2.82e-15,39;UBERON:0003528,5.19e-14,29;UBERON:0002791,5.19e-14,29;UBERON:0001893,5.19e-14,29;UBERON:0010314,1.47e-13,92;UBERON:0000956,6.39e-10,21;UBERON:0001869,6.39e-10,21;UBERON:0000203,6.39e-10,21;UBERON:0002021,3.98e-08,10;UBERON:0000411,3.98e-08,10;UBERON:0001950,3.98e-08,10;UBERON:0002619,5.18e-08,17 | |||
|phase1_expression=11.8510146857548,0,0,0.30246421130683,0,0,0,0.645616617207881,15.0643932702283,0.234064526321993,10.9579499664323,0.159544317990673,19.8592846720199,0.0874204024189974,0.999329285446988,1.01237633694913,0.699561878128147,4.57420139769445,5.21034847701807,3.39511721438424,37.8442641172261,0.794327609607082,0,0,0.22940928106717,0,0,0,0,0,0,0,0,0,0.866554859253824,0.831173226792462,0.612508068787107,0,0,0.523523743973798,0,0,0.485510353031154,8.68688044031483,8.41428529121971,6.79122982998222,3.12956537739216,1.96222640742402,1.5378032791413,1.74986909166855,1.39986421625363,7.18762821824858,3.35565212115473,17.4086914082723,13.4437519656986,0.514518872071894,0.85960031981627,2.57836046138721,132.314965402177,119.551961315479,164.796164911607,0.338844532069132,3.55717918444456,2.2497492932035,0.988866362566974,0.7104801149461,13.1824048628098,18.0582603501131,48.630428172676,57.5125297293002,56.156764680819,262.227603682692,185.971311481259,60.0204916153275,46.1975170307899,97.4371913806622,198.2085857989,260.609857031868,213.973900825947,120.016521834476,116.829720880277,104.703587481909,181.189766351896,113.678047226399,141.185580945773,262.219441071564,204.872848669909,150.051553889367,5.6794644999888,12.9983083383671,8.40607017234866,0,0,3.2382191498269,0.649776417447669,0.448026887097336,8.00533194750986,13.2935651610885,10.3914401841148,11.3068663843309,10.8449433228044,37.2146784501522,152.883143823987,127.9920065676,0.865964164044856,1.26679932737549,1.01104889002957,7.53613606145796,23.8222852955398,16.92240385339,9.88866362566974,12.4830846107978,15.2206228188999,14.1679282119465,13.7578787348775,6.40899615781345,26.2026665798436,35.5714418022983,6.19227386364912,5.82360659810673,5.96272099843063,5.33362778448744,11.1835056730873,149.318206475889,150.173288785247,2.81002760729451,0.599075622529601,1.19980546198682,1.01656181658452,142.450898073986,269.010354457352,119.999906267786,385.542342186469,274.126970258114,186.385875969925,185.766246212583,15.0722258498468,6.59356944233493,21.9868799837297,23.1486041475121,11.7108398666433,17.4725599369439,28.9900028986612,23.5099515823715,36.1273810493551,37.1529788826064,46.9445640044241,42.9447595426766,3.44908788692548,5.29497024469894,6.68614271823006,8.76782929710299,9.17555922444473,10.447564995665,11.3180175024369,9.15557627365069,0,0,0.284163499395593,3.72826390563903,3.98694301967864,1.98068267607116,5.20838418287463,3.54175617145327,2.62254091908543,4.88321283975857,4.29237442239391,4.78737903705395,5.75959474697182,6.56669856316381,9.64718833595683,7.60239934611728,9.44065495751518,10.468100663309,265.806494985057,96.6274310241481,2.31293148088659,2.11560453330835,4.26576501070468,6.27039014023184,8.11865006329188,4.43703754171354,6.89371935919098,6.27744566171445,3.32170343081158,4.77626968699632,6.03204501120647,5.37182474511107,7.01870713628832,5.39291645192533,4.32276099749388,3.18626037206988,5.69003702859245,6.85491075658373,9.01661885384643,6.31319116320474,10.2794818198842,12.9751266797089,14.1649843158336,12.5468625782662,11.303908404579,9.74837594982224,0.592905254174298,1.16791574001266,1.37591296579242,0.224862112384854,0.405720242777006,0.241177159752417,0.50925170356284,1.43848068725405,0.486405680325106,1.09824565275233,5.75072826109418,0.744281895337007,0,2.02063102357689,1.61457672169721,0.482443521363367,39.9066890759866,5.68474235311454,4.88894929326078,3.73439188705414,2.81628297946203,5.86271901046355,13.5684875305028,12.6836871107569,14.3447981136634,17.9386398615508,19.7723913135284,23.9240439484977,17.7865531321872,15.1881511510587,0,0.54390568381871,2.45882136509518,7.17435540392304,141.123968599269,120.845248876561,0.327869890753351,3.7870639080656,18.2994767261429,16.3984272604588,26.7125013188671,7.88597033243422,8.46634961513098,20.0984336860071,16.1924280669958,29.5178416490425,18.9738133414331,187.009006157492,19.1619115031163,20.2994788180671,18.0804524882469,27.5500105364134,14.6019652173959,4.12727081463468,3.02323556964751,5.46954731292105,5.90603785761546,8.30074899448604,6.20227903603731,10.9060118843252,10.3384239731569,10.7452497698177,15.8127912862498,22.6898195146011,26.8947288545492,9.90336017172206,9.18446654857557,12.4315480318324,12.4138163549592,21.7609957474526,31.4288629350051,35.9268639955227,35.4354279176203,67.5744306055586,21.3912546113313,16.9832840529724,8.07322133479528,6.1519183426719,4.8942661041286,3.44695889464629,5.82961673259701,156.869805500891,5.98048082792484,7.42992724667601,4.8150577116125,3.01389531207506,3.69074414846768,4.11800711771741,4.41943917984024,6.01791244991729,5.11339903076368,7.63736494412091,6.64305586520384,6.70954241518601,5.18425635944646,6.690825472463,5.67742665740062,6.20375993370175,6.94289028092822,7.32916637555283,5.70305882483889,14.2908042009993,2.25477175473676,8.67195967055077,8.43838301331198,8.36140109879405,5.16639293910924,5.57555214119568,7.27614879603675,9.63512447845231,11.8491059201053,2.17425708743405,5.76060012515731,28.441000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| ||
|short_description=p1@Rab6b | |short_description=p1@Rab6b | ||
}} | }} |
Latest revision as of 01:44, 26 September 2015
Short description: | p1@Rab6b |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Rab6b_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -207bp_to_ENSMUST00000035155, NM_173781, uc009rgf.1_5end |
EntrezGene: | Rab6b |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 5.85e-13 | 23 |
neuroblast (sensu Vertebrata) | 5.85e-13 | 23 |
neuron | 1.98e-12 | 33 |
neuronal stem cell | 1.98e-12 | 33 |
neuroblast | 1.98e-12 | 33 |
electrically signaling cell | 1.98e-12 | 33 |
electrically responsive cell | 5.89e-09 | 39 |
electrically active cell | 5.89e-09 | 39 |
neural cell | 3.72e-08 | 43 |
ectodermal cell | 4.38e-08 | 44 |
neurectodermal cell | 4.38e-08 | 44 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.84e-23 | 73 |
ectoderm-derived structure | 8.04e-23 | 95 |
ectoderm | 8.04e-23 | 95 |
presumptive ectoderm | 8.04e-23 | 95 |
neurectoderm | 8.29e-23 | 64 |
neural plate | 8.29e-23 | 64 |
presumptive neural plate | 8.29e-23 | 64 |
nervous system | 1.04e-22 | 75 |
regional part of nervous system | 3.04e-21 | 54 |
neural tube | 6.62e-20 | 52 |
neural rod | 6.62e-20 | 52 |
future spinal cord | 6.62e-20 | 52 |
neural keel | 6.62e-20 | 52 |
ecto-epithelium | 1.68e-19 | 73 |
pre-chordal neural plate | 4.44e-18 | 49 |
gray matter | 4.64e-17 | 34 |
brain | 7.60e-17 | 47 |
future brain | 7.60e-17 | 47 |
regional part of brain | 3.02e-16 | 46 |
anterior neural tube | 8.13e-16 | 40 |
regional part of forebrain | 2.82e-15 | 39 |
forebrain | 2.82e-15 | 39 |
future forebrain | 2.82e-15 | 39 |
brain grey matter | 5.19e-14 | 29 |
regional part of telencephalon | 5.19e-14 | 29 |
telencephalon | 5.19e-14 | 29 |
structure with developmental contribution from neural crest | 1.47e-13 | 92 |
cerebral cortex | 6.39e-10 | 21 |
cerebral hemisphere | 6.39e-10 | 21 |
pallium | 6.39e-10 | 21 |
occipital lobe | 3.98e-08 | 10 |
visual cortex | 3.98e-08 | 10 |
neocortex | 3.98e-08 | 10 |
regional part of cerebral cortex | 5.18e-08 | 17 |