FFCP PHASE1:Mm9::chr17:24769553..24769577,-: Difference between revisions
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{{FFCP|EntrezGene=22084|HGNC=|MCL_coexpression_id=311|UniProt=E9QMW6,Q7TT21,E9QLU3,E9QN11,E9QN07,E9QMZ9,E9QMZ6,E9PY87,Q3UGI8|association_with_transcript=0bp_to_ENSMUST00000088420,ENSMUST00000097373,ENSMUST00000097374,ENSMUST00000115290,ENSMUST00000115291,ENSMUST00000115292,ENSMUST00000115294,ENSMUST00000163283,NM_001039363,NM_011647,uc008awz.1,uc008axa.1,uc008axb.1,uc008axc.1,uc008axd.1,uc008axe.1,uc008axg.1,uc008axh.1_5end|description=CAGE_peak_1_at_Tsc2_5end|id=chr17:24769553..24769577,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0004111!2.84e-17!122;UBERON:0000025!9.41e-16!114;UBERON:0000033!2.31e-15!63;UBERON:0001049!1.10e-14!52;UBERON:0005068!1.10e-14!52;UBERON:0006241!1.10e-14!52;UBERON:0007135!1.10e-14!52;UBERON:0000955!2.18e-14!50;UBERON:0006238!2.18e-14!50;UBERON:0002616!9.70e-14!49;UBERON:0003056!2.94e-13!49;UBERON:0002346!7.80e-13!71;UBERON:0003075!7.80e-13!71;UBERON:0007284!7.80e-13!71;UBERON:0003080!3.41e-12!40;UBERON:0002780!1.27e-11!39;UBERON:0001890!1.27e-11!39;UBERON:0006240!1.27e-11!39;UBERON:0000468!6.27e-11!333;UBERON:0004121!3.52e-09!102;UBERON:0000924!3.52e-09!102;UBERON:0006601!3.52e-09!102;UBERON:0001017!7.58e-09!73;UBERON:0005743!7.58e-09!73;UBERON:0002791!9.19e-09!29;UBERON:0003528!9.19e-09!29;UBERON:0001893!9.19e-09!29;UBERON:0002020!1.92e-08!34;UBERON:0000073!6.02e-08!75;UBERON:0001016!6.02e-08!75;UBERON:0000922!1.24e-07!328;UBERON:0000956!2.44e-07!21;UBERON:0001869!2.44e-07!21;UBERON:0000203!2.44e-07!21;UBERON:0000477!4.39e-07!154|ontology_enrichment_uberon_v019_2=UBERON:0004111,2.84e-17,122;UBERON:0000025,9.41e-16,114;UBERON:0010314,1.79e-15,92;UBERON:0000955,3.54e-15,47;UBERON:0006238,3.54e-15,47;UBERON:0001049,1.10e-14,52;UBERON:0005068,1.10e-14,52;UBERON:0006241,1.10e-14,52;UBERON:0007135,1.10e-14,52;UBERON:0002616,1.65e-14,46;UBERON:0002346,8.93e-14,64;UBERON:0003075,8.93e-14,64;UBERON:0007284,8.93e-14,64;UBERON:0000073,1.76e-13,54;UBERON:0003056,2.94e-13,49;UBERON:0010371,2.98e-12,73;UBERON:0003080,3.41e-12,40;UBERON:0002780,1.27e-11,39;UBERON:0001890,1.27e-11,39;UBERON:0006240,1.27e-11,39;UBERON:0004121,1.55e-09,95;UBERON:0000924,1.55e-09,95;UBERON:0006601,1.55e-09,95;UBERON:0001017,7.58e-09,73;UBERON:0003528,9.19e-09,29;UBERON:0002791,9.19e-09,29;UBERON:0001893,9.19e-09,29;UBERON:0002020,1.92e-08,34;UBERON:0001016,6.02e-08,75;UBERON:0000956,2.44e-07,21;UBERON:0001869,2.44e-07,21;UBERON:0000203,2.44e-07,21|phase1_expression=12.3314612270691,8.02643437570531,5.45999087267443,18.4503168897166,14.5259761684441,7.55456723603504,7.70921713965235,6.45616617207881,1.97104211012333,2.34064526321993,5.82141091966717,5.18519033469687,7.87523357683546,6.90621179110079,9.99329285446988,7.89653542820321,11.8925519281785,9.30613387806801,11.2433835556706,9.76096199135469,14.4573593256819,12.5106598513115,7.83599367416806,7.35965144849671,5.27641346454491,7.46501553349526,7.75371593086335,4.52489588640367,7.9809836171677,8.06496415231778,4.21287970245079,10.7955214488137,15.9916844771988,0,8.66554859253824,5.65197794218874,10.0042984568561,10.4632907684227,5.4693474116666,10.470474879476,14.1175557127443,12.294818729252,13.1087795318411,6.6725313527056,10.1376931219515,11.1963518818626,19.559783608701,18.3141131359575,14.2796018777407,18.8597002102055,14.8385606922884,20.125359011096,7.71799987865587,5.80289713609076,7.73015738027667,7.46052364504246,10.0286703978565,8.25075347643908,26.7057728334669,17.4567023159771,20.9164363157039,17.958760199664,16.0073063300005,9.89889689009539,8.89979726310277,7.8152812644071,9.28760342607055,14.2160772968975,22.1895770340142,17.2807601064564,19.3498964443271,19.1386159550548,16.3442720304194,18.2511290830282,23.2904494574314,22.9804696652505,12.1127469099328,19.5361627270337,17.050325191443,25.7178261073878,25.2505896342651,25.0038417867245,18.4260779340911,10.1297269805702,17.72459674211,14.142172102736,17.7964600998879,24.0455285114638,9.08714319998209,9.8998743739889,17.971598299504,18.0689014166091,12.9194553404473,9.17495425784289,29.8897152025928,23.7454250161588,11.3759980306719,9.54409806437123,5.45550609666024,6.71345191569646,8.73229202615419,14.115912515575,15.2883143823987,0,9.52560580449342,4.56047757855178,7.07734223020697,8.22123933977232,15.018397251536,23.4538579722423,12.6644288539279,11.8741536541735,16.1430848079241,12.8114244469729,18.6966044345771,20.4836543867371,16.5620628382031,37.1620347284173,15.9229899350977,20.7061567932684,20.759102735277,13.5765070877862,14.9113408974498,32.2058876712702,28.065858713003,19.9256503062701,5.03223522924865,4.19931911695385,3.81210681219194,31.4560342750128,30.652540388848,34.0523294225863,35.807809959609,30.4301394223093,28.0513860155406,28.7167035629931,19.5531578592607,17.0437549735827,20.7232661915613,26.0947901299228,14.7036100547855,13.5642241615749,21.9675798362526,16.8789395976001,23.6767017046621,20.498195245576,25.9553777030449,25.3529303324235,18.7544153851573,20.6125627382923,20.762232651346,15.7820927347854,13.9023624612799,19.8503734917635,15.8452245034116,17.7140497468459,3.51106593656617,6.94839349209731,6.81992398549422,19.8840741634082,19.2311369184499,20.3470129450947,23.674473558521,17.9055450890137,17.8949850949359,20.4629871380359,27.6321603441608,25.6883753207773,28.4688540350321,21.9984401865988,33.8867623901677,32.1639972335731,34.0302678701129,43.4828796783605,39.74480027862,32.5178575118539,25.7726650727362,10.0491215332147,12.797295032114,16.4888037020911,14.1754207454303,18.7565677899709,16.6783532883653,15.5985013412299,15.1849299694244,15.317002789333,14.0747716928151,15.5186048192098,21.056121408865,19.7740269903929,17.2910439899755,17.1261494998756,11.3800740571849,15.5377977149231,19.1603150644237,13.6446389656361,16.6799138964158,23.1448205638051,23.0813360503539,22.5843526408791,23.0788129926821,27.2707732267179,18.6765155064904,14.5155241973002,13.9556886530374,13.9414509678609,12.9830477688642,15.1941610644023,11.7127891819453,15.247895284893,8.59316701907687,14.0026320725922,11.5014565221884,16.0020607497456,16.8500343481863,24.752730038817,17.5809465251474,27.9817242390753,23.2789019609922,13.8328730592454,17.7631824321808,16.4652733201932,15.7242466353296,20.2682571504597,23.8043640886014,23.8063050386515,20.8078390220172,20.5962161373361,26.3100368284854,15.5670148979951,22.7944176062982,22.8545512558788,10.5553898757491,9.24639662491806,15.7364567366092,20.4193192265502,30.9862638676438,31.178308633526,11.3115112309906,32.5687496093641,7.88770548540642,11.7131623288992,9.47862950024315,10.7535959078648,11.5855310522845,10.4738316391868,13.3587531552715,8.47541987942804,10.2774822266096,42.0930924512567,20.8651925256155,21.5459380437379,22.6412873501471,21.7760562323747,25.2215762845929,13.110154352369,19.9533547596736,17.3516673375426,23.6241514304618,22.7502009478506,20.4158351602895,14.9048829085777,14.9728898921583,12.009396801561,21.0837217149998,23.721174947083,25.8734100372879,15.8453762747553,20.9561067728062,22.7197257133488,23.4089108407801,18.9070946658195,22.3786668018885,28.9241701658869,13.1416156515678,14.8282449604674,37.9308844654535,17.9726015706213,15.1776561094151,17.430435304237,17.3089898804548,17.8913580722117,16.6144076879015,28.5554965096185,12.6444451790411,18.3684312487268,14.2599786074678,11.1137389632768,11.6190093562871,12.8115776995653,8.15896463970505,7.69732987780119,9.12119827109197,16.2294005062569,17.0821436533813,17.8921131071627,11.5565714679327,13.381650944926,14.4119292072477,16.5883146053329,19.5062155511793,21.7257431846745,15.8130267415987,28.5816084019986,21.9840246086834,19.2876344396733,15.0567226315959,18.6673140810286,16.9199368755828,15.5439635451516,17.6035857968631,20.5722928053441,17.3017918302423,7.9722759872582,17.5698303817298,14.8525226695244,17.231643299664,14.276823045911,11.0432699531126,11.8157619140538,12.715606706001,12.3801313005568,11.3720935924424,12.317906893674,13.031363938005,10.4859232542314,10.8178247621125,12.2189038883218,12.0383209247016,32.8759056242057,4.88369097422942,9.15081337416652,11.7519231454855,22.6031825017663,20.8327547750812,22.3444981606063,17.1494703263253,26.0817494098389,23.1548255472997,31.302116082488,28.6447756719698,20.7942350635862,21.9226406326606,35.5035131773159,30.3760125104313,27.0192721934532,23.1102628581944,23.8169743405837,15.4643147900423,16.3600198094423,17.5855613926758,19.6916440825318,14.6729213839588,17.8328203196514,18.2242316797324,19.1612603232172,14.7622836412235,17.6888048234658,17.7435509923168,18.2967551144494,14.7017166727715,18.8874199594364,20.2172850723759,13.8125170472091,22.9450965370814,17.3618298417335,18.5438655361488,19.7246552980092,17.8292011240416,14.730491911225,17.1674056762071,13.2265239135419,15.3398290076989,15.4844732441768,17.1952294500406,17.6256706663355,18.4693594830372,20.2011217796786,21.7102083167239,20.2919233693661,12.2769312950907,18.127610418758,17.9403148212461,31.7259433981191,23.8610240614317,20.19787908054,20.8504281955039,23.6032818457882,17.8538233427725|short_description=p1@Tsc2}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=22084 | |||
|HGNC= | |||
|MCL_coexpression_id=311 | |||
|TSSclassifier=NA | |||
|UniProt=E9QMW6,Q7TT21,E9QLU3,E9QN11,E9QN07,E9QMZ9,E9QMZ6,E9PY87,Q3UGI8 | |||
|association_with_transcript=0bp_to_ENSMUST00000088420,ENSMUST00000097373,ENSMUST00000097374,ENSMUST00000115290,ENSMUST00000115291,ENSMUST00000115292,ENSMUST00000115294,ENSMUST00000163283,NM_001039363,NM_011647,uc008awz.1,uc008axa.1,uc008axb.1,uc008axc.1,uc008axd.1,uc008axe.1,uc008axg.1,uc008axh.1_5end | |||
|cluster_id=chr17:24769553..24769577,- | |||
|description=CAGE_peak_1_at_Tsc2_5end | |||
|id=chr17:24769553..24769577,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004111!2.84e-17!122;UBERON:0000025!9.41e-16!114;UBERON:0000033!2.31e-15!63;UBERON:0001049!1.10e-14!52;UBERON:0005068!1.10e-14!52;UBERON:0006241!1.10e-14!52;UBERON:0007135!1.10e-14!52;UBERON:0000955!2.18e-14!50;UBERON:0006238!2.18e-14!50;UBERON:0002616!9.70e-14!49;UBERON:0003056!2.94e-13!49;UBERON:0002346!7.80e-13!71;UBERON:0003075!7.80e-13!71;UBERON:0007284!7.80e-13!71;UBERON:0003080!3.41e-12!40;UBERON:0002780!1.27e-11!39;UBERON:0001890!1.27e-11!39;UBERON:0006240!1.27e-11!39;UBERON:0000468!6.27e-11!333;UBERON:0004121!3.52e-09!102;UBERON:0000924!3.52e-09!102;UBERON:0006601!3.52e-09!102;UBERON:0001017!7.58e-09!73;UBERON:0005743!7.58e-09!73;UBERON:0002791!9.19e-09!29;UBERON:0003528!9.19e-09!29;UBERON:0001893!9.19e-09!29;UBERON:0002020!1.92e-08!34;UBERON:0000073!6.02e-08!75;UBERON:0001016!6.02e-08!75;UBERON:0000922!1.24e-07!328;UBERON:0000956!2.44e-07!21;UBERON:0001869!2.44e-07!21;UBERON:0000203!2.44e-07!21;UBERON:0000477!4.39e-07!154 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0004111,2.84e-17,122;UBERON:0000025,9.41e-16,114;UBERON:0010314,1.79e-15,92;UBERON:0000955,3.54e-15,47;UBERON:0006238,3.54e-15,47;UBERON:0001049,1.10e-14,52;UBERON:0005068,1.10e-14,52;UBERON:0006241,1.10e-14,52;UBERON:0007135,1.10e-14,52;UBERON:0002616,1.65e-14,46;UBERON:0002346,8.93e-14,64;UBERON:0003075,8.93e-14,64;UBERON:0007284,8.93e-14,64;UBERON:0000073,1.76e-13,54;UBERON:0003056,2.94e-13,49;UBERON:0010371,2.98e-12,73;UBERON:0003080,3.41e-12,40;UBERON:0002780,1.27e-11,39;UBERON:0001890,1.27e-11,39;UBERON:0006240,1.27e-11,39;UBERON:0004121,1.55e-09,95;UBERON:0000924,1.55e-09,95;UBERON:0006601,1.55e-09,95;UBERON:0001017,7.58e-09,73;UBERON:0003528,9.19e-09,29;UBERON:0002791,9.19e-09,29;UBERON:0001893,9.19e-09,29;UBERON:0002020,1.92e-08,34;UBERON:0001016,6.02e-08,75;UBERON:0000956,2.44e-07,21;UBERON:0001869,2.44e-07,21;UBERON:0000203,2.44e-07,21 | |||
|phase1_expression=12.3314612270691,8.02643437570531,5.45999087267443,18.4503168897166,14.5259761684441,7.55456723603504,7.70921713965235,6.45616617207881,1.97104211012333,2.34064526321993,5.82141091966717,5.18519033469687,7.87523357683546,6.90621179110079,9.99329285446988,7.89653542820321,11.8925519281785,9.30613387806801,11.2433835556706,9.76096199135469,14.4573593256819,12.5106598513115,7.83599367416806,7.35965144849671,5.27641346454491,7.46501553349526,7.75371593086335,4.52489588640367,7.9809836171677,8.06496415231778,4.21287970245079,10.7955214488137,15.9916844771988,0,8.66554859253824,5.65197794218874,10.0042984568561,10.4632907684227,5.4693474116666,10.470474879476,14.1175557127443,12.294818729252,13.1087795318411,6.6725313527056,10.1376931219515,11.1963518818626,19.559783608701,18.3141131359575,14.2796018777407,18.8597002102055,14.8385606922884,20.125359011096,7.71799987865587,5.80289713609076,7.73015738027667,7.46052364504246,10.0286703978565,8.25075347643908,26.7057728334669,17.4567023159771,20.9164363157039,17.958760199664,16.0073063300005,9.89889689009539,8.89979726310277,7.8152812644071,9.28760342607055,14.2160772968975,22.1895770340142,17.2807601064564,19.3498964443271,19.1386159550548,16.3442720304194,18.2511290830282,23.2904494574314,22.9804696652505,12.1127469099328,19.5361627270337,17.050325191443,25.7178261073878,25.2505896342651,25.0038417867245,18.4260779340911,10.1297269805702,17.72459674211,14.142172102736,17.7964600998879,24.0455285114638,9.08714319998209,9.8998743739889,17.971598299504,18.0689014166091,12.9194553404473,9.17495425784289,29.8897152025928,23.7454250161588,11.3759980306719,9.54409806437123,5.45550609666024,6.71345191569646,8.73229202615419,14.115912515575,15.2883143823987,0,9.52560580449342,4.56047757855178,7.07734223020697,8.22123933977232,15.018397251536,23.4538579722423,12.6644288539279,11.8741536541735,16.1430848079241,12.8114244469729,18.6966044345771,20.4836543867371,16.5620628382031,37.1620347284173,15.9229899350977,20.7061567932684,20.759102735277,13.5765070877862,14.9113408974498,32.2058876712702,28.065858713003,19.9256503062701,5.03223522924865,4.19931911695385,3.81210681219194,31.4560342750128,30.652540388848,34.0523294225863,35.807809959609,30.4301394223093,28.0513860155406,28.7167035629931,19.5531578592607,17.0437549735827,20.7232661915613,26.0947901299228,14.7036100547855,13.5642241615749,21.9675798362526,16.8789395976001,23.6767017046621,20.498195245576,25.9553777030449,25.3529303324235,18.7544153851573,20.6125627382923,20.762232651346,15.7820927347854,13.9023624612799,19.8503734917635,15.8452245034116,17.7140497468459,3.51106593656617,6.94839349209731,6.81992398549422,19.8840741634082,19.2311369184499,20.3470129450947,23.674473558521,17.9055450890137,17.8949850949359,20.4629871380359,27.6321603441608,25.6883753207773,28.4688540350321,21.9984401865988,33.8867623901677,32.1639972335731,34.0302678701129,43.4828796783605,39.74480027862,32.5178575118539,25.7726650727362,10.0491215332147,12.797295032114,16.4888037020911,14.1754207454303,18.7565677899709,16.6783532883653,15.5985013412299,15.1849299694244,15.317002789333,14.0747716928151,15.5186048192098,21.056121408865,19.7740269903929,17.2910439899755,17.1261494998756,11.3800740571849,15.5377977149231,19.1603150644237,13.6446389656361,16.6799138964158,23.1448205638051,23.0813360503539,22.5843526408791,23.0788129926821,27.2707732267179,18.6765155064904,14.5155241973002,13.9556886530374,13.9414509678609,12.9830477688642,15.1941610644023,11.7127891819453,15.247895284893,8.59316701907687,14.0026320725922,11.5014565221884,16.0020607497456,16.8500343481863,24.752730038817,17.5809465251474,27.9817242390753,23.2789019609922,13.8328730592454,17.7631824321808,16.4652733201932,15.7242466353296,20.2682571504597,23.8043640886014,23.8063050386515,20.8078390220172,20.5962161373361,26.3100368284854,15.5670148979951,22.7944176062982,22.8545512558788,10.5553898757491,9.24639662491806,15.7364567366092,20.4193192265502,30.9862638676438,31.178308633526,11.3115112309906,32.5687496093641,7.88770548540642,11.7131623288992,9.47862950024315,10.7535959078648,11.5855310522845,10.4738316391868,13.3587531552715,8.47541987942804,10.2774822266096,42.0930924512567,20.8651925256155,21.5459380437379,22.6412873501471,21.7760562323747,25.2215762845929,13.110154352369,19.9533547596736,17.3516673375426,23.6241514304618,22.7502009478506,20.4158351602895,14.9048829085777,14.9728898921583,12.009396801561,21.0837217149998,23.721174947083,25.8734100372879,15.8453762747553,20.9561067728062,22.7197257133488,23.4089108407801,18.9070946658195,22.3786668018885,28.9241701658869,13.1416156515678,14.8282449604674,37.9308844654535,17.9726015706213,15.1776561094151,17.430435304237,17.3089898804548,17.8913580722117,16.6144076879015,28.5554965096185,12.6444451790411,18.3684312487268,14.2599786074678,11.1137389632768,11.6190093562871,12.8115776995653,8.15896463970505,7.69732987780119,9.12119827109197,16.2294005062569,17.0821436533813,17.8921131071627,11.556571467932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| |||
|short_description=p1@Tsc2 | |||
}} |
Latest revision as of 01:40, 26 September 2015
Short description: | p1@Tsc2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Tsc2_5end |
Coexpression cluster: | MCL_coexpression_mm9:311 |
Association with transcript: | 0bp_to_ENSMUST00000088420, ENSMUST00000097373, ENSMUST00000097374, ENSMUST00000115290, ENSMUST00000115291, ENSMUST00000115292, ENSMUST00000115294, ENSMUST00000163283, NM_001039363, NM_011647, uc008awz.1, uc008axa.1, uc008axb.1, uc008axc.1, uc008axd.1, uc008axe.1, uc008axg.1, uc008axh.1_5end |
EntrezGene: | Tsc2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
anatomical conduit | 2.84e-17 | 122 |
tube | 9.41e-16 | 114 |
structure with developmental contribution from neural crest | 1.79e-15 | 92 |
brain | 3.54e-15 | 47 |
future brain | 3.54e-15 | 47 |
neural tube | 1.10e-14 | 52 |
neural rod | 1.10e-14 | 52 |
future spinal cord | 1.10e-14 | 52 |
neural keel | 1.10e-14 | 52 |
regional part of brain | 1.65e-14 | 46 |
neurectoderm | 8.93e-14 | 64 |
neural plate | 8.93e-14 | 64 |
presumptive neural plate | 8.93e-14 | 64 |
regional part of nervous system | 1.76e-13 | 54 |
pre-chordal neural plate | 2.94e-13 | 49 |
ecto-epithelium | 2.98e-12 | 73 |
anterior neural tube | 3.41e-12 | 40 |
regional part of forebrain | 1.27e-11 | 39 |
forebrain | 1.27e-11 | 39 |
future forebrain | 1.27e-11 | 39 |
ectoderm-derived structure | 1.55e-09 | 95 |
ectoderm | 1.55e-09 | 95 |
presumptive ectoderm | 1.55e-09 | 95 |
central nervous system | 7.58e-09 | 73 |
brain grey matter | 9.19e-09 | 29 |
regional part of telencephalon | 9.19e-09 | 29 |
telencephalon | 9.19e-09 | 29 |
gray matter | 1.92e-08 | 34 |
nervous system | 6.02e-08 | 75 |
cerebral cortex | 2.44e-07 | 21 |
cerebral hemisphere | 2.44e-07 | 21 |
pallium | 2.44e-07 | 21 |