FFCP PHASE1:Mm9::chr9:102256972..102257002,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=270190 | |EntrezGene=270190 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=13 | |||
|TSSclassifier=NA | |||
|UniProt=Q8CBF3,Q8CA63,B1B1C1 | |UniProt=Q8CBF3,Q8CA63,B1B1C1 | ||
|association_with_transcript=20bp_to_ENSMUST00000035129,ENSMUST00000085169,ENSMUST00000149800,NM_001168296,NM_173447,uc009rfn.2,uc009rfo.2,uc012gzg.1_5end | |association_with_transcript=20bp_to_ENSMUST00000035129,ENSMUST00000085169,ENSMUST00000149800,NM_001168296,NM_173447,uc009rfn.2,uc009rfo.2,uc012gzg.1_5end | ||
|cluster_id=chr9:102256972..102257002,- | |||
|description=CAGE_peak_1_at_Ephb1_5end | |description=CAGE_peak_1_at_Ephb1_5end | ||
|id=chr9:102256972..102257002,- | |id=chr9:102256972..102257002,- | ||
|ontology_enrichment_celltype=CL:0000117!2.10e-14!23;CL:0000337!2.10e-14!23;CL:0000540!4.36e-09!33;CL:0000047!4.36e-09!33;CL:0000031!4.36e-09!33;CL:0000404!4.36e-09!33;CL:0000221!2.07e-07!44;CL:0000133!2.07e-07!44;CL:0002319!4.45e-07!43 | |ontology_enrichment_celltype=CL:0000117!2.10e-14!23;CL:0000337!2.10e-14!23;CL:0000540!4.36e-09!33;CL:0000047!4.36e-09!33;CL:0000031!4.36e-09!33;CL:0000404!4.36e-09!33;CL:0000221!2.07e-07!44;CL:0000133!2.07e-07!44;CL:0002319!4.45e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,6.51e-15,23;CL:0000337,6.51e-15,23;CL:0000540,1.67e-08,33;CL:0000047,1.67e-08,33;CL:0000031,1.67e-08,33;CL:0000404,1.67e-08,33;CL:0000221,8.15e-07,44;CL:0000133,8.15e-07,44 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.14e-24!63;UBERON:0001049!1.36e-23!52;UBERON:0005068!1.36e-23!52;UBERON:0006241!1.36e-23!52;UBERON:0007135!1.36e-23!52;UBERON:0004121!2.34e-23!102;UBERON:0000924!2.34e-23!102;UBERON:0006601!2.34e-23!102;UBERON:0001017!2.05e-22!73;UBERON:0005743!2.05e-22!73;UBERON:0000955!1.02e-21!50;UBERON:0006238!1.02e-21!50;UBERON:0002616!1.21e-21!49;UBERON:0000073!3.67e-21!75;UBERON:0001016!3.67e-21!75;UBERON:0003056!3.91e-21!49;UBERON:0002346!5.02e-21!71;UBERON:0003075!5.02e-21!71;UBERON:0007284!5.02e-21!71;UBERON:0003080!6.90e-19!40;UBERON:0002020!7.02e-19!34;UBERON:0002780!3.39e-18!39;UBERON:0001890!3.39e-18!39;UBERON:0006240!3.39e-18!39;UBERON:0002791!5.75e-16!29;UBERON:0003528!5.75e-16!29;UBERON:0001893!5.75e-16!29;UBERON:0000956!3.82e-11!21;UBERON:0001869!3.82e-11!21;UBERON:0000203!3.82e-11!21;UBERON:0000153!8.79e-11!94;UBERON:0000468!1.32e-10!333;UBERON:0007811!1.93e-10!86;UBERON:0002619!2.25e-09!17;UBERON:0000922!8.42e-08!328;UBERON:0000025!4.70e-07!114;UBERON:0004111!5.74e-07!122;UBERON:0002021!9.94e-07!10;UBERON:0000411!9.94e-07!10;UBERON:0001950!9.94e-07!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010371,4.62e-26,73;UBERON:0000073,7.97e-26,54;UBERON:0004121,8.64e-25,95;UBERON:0000924,8.64e-25,95;UBERON:0006601,8.64e-25,95;UBERON:0001049,1.27e-24,52;UBERON:0005068,1.27e-24,52;UBERON:0006241,1.27e-24,52;UBERON:0007135,1.27e-24,52;UBERON:0002346,3.44e-24,64;UBERON:0003075,3.44e-24,64;UBERON:0007284,3.44e-24,64;UBERON:0001017,2.58e-22,73;UBERON:0003056,6.52e-22,49;UBERON:0000955,8.78e-21,47;UBERON:0006238,8.78e-21,47;UBERON:0001016,1.02e-20,75;UBERON:0002616,1.04e-20,46;UBERON:0003080,1.41e-19,40;UBERON:0002020,1.44e-19,34;UBERON:0002780,7.40e-19,39;UBERON:0001890,7.40e-19,39;UBERON:0006240,7.40e-19,39;UBERON:0010314,8.62e-18,92;UBERON:0003528,1.54e-16,29;UBERON:0002791,1.54e-16,29;UBERON:0001893,1.54e-16,29;UBERON:0000956,1.59e-11,21;UBERON:0001869,1.59e-11,21;UBERON:0000203,1.59e-11,21;UBERON:0002619,1.10e-09,17;UBERON:0002021,6.18e-07,10;UBERON:0000411,6.18e-07,10;UBERON:0001950,6.18e-07,10 | |||
|phase1_expression=11.8510146857548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.58937230525805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,5.27246838562732,7.97162586204562,1.25987779462826,7.18762821824858,0,0,0,0,0.286533439938757,0.515672092277442,119.771344828882,139.653618527817,123.597123683705,0.677689064138264,0,0,0,0,3.89480143673926,4.99483796918021,21.7748185847803,27.4062054813332,22.9254207873006,44.8472045513972,36.4433092570162,54.6308964498695,53.9610001832671,76.2951592886317,53.9567816897005,39.455387468323,36.7119614482422,76.0983880203218,58.9180424799518,55.2168172790166,33.7811428791671,38.2678574821542,32.2404302809069,42.1318877227345,38.725097177356,43.0582719856444,0.454357159999104,0.0755715601067855,2.31891590961342,0,0,0.539703191637817,0,0,3.23022166303029,0,0,0,18.5913314105218,0,0,0,0,0,0,2.16949371466214,2.84831672011889,2.07818994690755,3.12273588179045,1.21786191324856,0.922461989024234,1.05505848386836,1.29347577849275,2.51333182659351,0.247194967734374,7.66376591675532,0,2.75003644910596,0.662524555381181,0.484875253135222,0,94.5681974347297,79.3803018822995,1.78819938646014,0,0,0,66.6568345351461,69.9975922312499,76.900463493073,37.0245802009549,33.243009452943,43.0121252238289,39.5868681885329,2.34230536855727,1.61729061793121,2.0217820674694,10.7325346502102,3.513251959993,6.66716102857071,13.5046597354012,24.7155901250573,23.8808112021161,18.3202620007335,13.3056448874815,14.4873887613849,1.5089759505299,8.13156144721623,7.03804496655795,4.82230611340665,8.06337022754234,4.52727816478817,3.49829631893504,3.18454826909589,0,0,0,1.03562886267751,0.938104239924385,0.720248245844059,2.3674473558521,4.52557733019029,2.77680803197281,2.09280550275367,2.41446061259657,2.6856028744449,2.30383789878873,8.70087559619205,8.26901857367728,8.04099930839328,8.56245449635098,6.03928884421673,27.1274033647724,41.6763680136102,0.330418782983798,0.264450566663544,5.54549451391608,9.75394021813842,20.1033239662466,14.3195302482573,8.89512175379481,7.03834816616469,0.474529061544512,1.64698954724011,4.52403375840485,2.58643413653496,3.50935356814416,4.49409704327111,0.432276099749388,0.995706366271836,7.01771233526402,6.05517116831563,11.270773567308,7.33144780243131,12.9948166402309,6.94344616914154,12.2678882021059,8.11855813887812,6.43694784149637,3.45512058981041,0.296452627087149,1.00107063429656,1.37591296579242,0,0.405720242777006,0,0.25462585178142,0,0.486405680325106,0,0,1.11642284300551,0.312037673114561,0.252578877947112,0.358794827043824,0,0.554259570499814,3.03186258832776,3.58522948172457,2.8856664581782,4.69380496577004,5.3602002381381,5.95109102215034,4.29294025287157,5.51723004371669,6.86540537911202,3.50800491046472,2.13022309130459,0.863424909329478,1.88043776155965,0,0,1.47529281905711,5.24279817978992,51.0550876161178,41.1413019938633,0,3.7870639080656,0.315508219416257,0.780877488593277,0,0.716906393857656,1.55959071857676,2.83076530788832,1.21443210502468,0.876767573733936,1.58115111178609,8.03303291054518,6.10342366395555,2.31485284767432,1.14020871547503,3.29940245945071,0,3.39892890616974,3.62788268357701,1.13163047853539,4.13422650033082,2.45948118355142,1.80899805217755,1.09060118843252,0.712994756769443,2.21225730555071,4.21674434299995,2.06271086496374,4.08527526904546,19.0864759673189,20.4386720376752,13.5032332069903,11.3497749531055,9.45354733290974,7.24015690649332,6.39376393140658,13.6109590676952,0,0.661585194164886,18.3023740765043,6.13564821444441,9.288190438936,13.130957840345,22.6514441648185,2.33184669303881,59.5215219453736,0.341741761595705,4.12773735926445,1.29636169158798,0.376736914009382,0.683471138605126,0.457556346413045,0,0,0,0.954670618015114,10.2809197913869,8.94605655358134,8.8564379473877,6.690825472463,5.24070152990826,2.42755823492677,2.31429676030941,1.04702376793612,0.518459893167171,4.97071450469541,0,3.28936401296753,2.15096037594227,1.36115831840833,1.6790777052105,0.675824501963113,1.64300134104056,2.0832701575032,2.83120229949419,3.14059357073808,4.89651010638371,0,2.43270258348197,1.33524244314275,0.389762468933385,0.179026695667481,0.993406773906324,0.360586348559907,0.147689527174577,0.706765149637033,0.228620419965,0.100826185136841,0,0,0.233753804363138,4.0811469050738,0.221985953374065,0,0,1.9318959403219,5.63047426353546,3.11357761254351,0.214368379079066,0.501572104035363,49.6981621503019,41.4292712856459,56.1437603170609,50.5248356090442,34.2541259885321,43.0574521512129,38.4762825132129,39.1779446805072,32.6262534468627,26.9235362110946,6.33102820263478,33.9171142390876,20.4880326904961,15.5588298923708,12.5767897576789,8.64064489715066,13.5570503958985,14.4224540067226,15.0832028508153,14.1510438587727,16.4761544928656,13.9583492625696,12.0797544636148,13.1251562429982,11.6594001979895,12.3836359733599,10.5454736609819,12.1532808892134,14.4230065281157,14.8670909335741,15.4291163573437,12.4233064311536,15.2599161566285,18.0229556624087,13.7399695406383,13.3691080468849,11.5244622909847,18.6779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|phase1_expression=11.8510146857548,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,8.58937230525805,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,1.30815093828268,5.27246838562732,7.97162586204562,1.25987779462826,7.18762821824858,0,0,0,0,0.286533439938757,0.515672092277442,119.771344828882,139.653618527817,123.597123683705,0.677689064138264,0,0,0,0,3.89480143673926,4.99483796918021,21.7748185847803,27.4062054813332,22.9254207873006,44.8472045513972,36.4433092570162,54.6308964498695,53.9610001832671,76.2951592886317,53.9567816897005,39.455387468323,36.7119614482422,76.0983880203218,58.9180424799518,55.2168172790166,33.7811428791671,38.2678574821542,32.2404302809069,42.1318877227345,38.725097177356,43.0582719856444,0.454357159999104,0.0755715601067855,2.31891590961342,0,0,0.539703191637817,0,0,3.23022166303029,0,0,0,18.5913314105218,0,0,0,0,0,0,2.16949371466214,2.84831672011889,2.07818994690755,3.12273588179045,1.21786191324856,0.922461989024234,1.05505848386836,1.29347577849275,2.51333182659351,0.247194967734374,7.66376591675532,0,2.75003644910596,0.662524555381181,0.484875253135222,0,94.5681974347297,79.3803018822995,1.78819938646014,0,0,0,66.6568345351461,69.9975922312499,76.900463493073,37.0245802009549,33.243009452943,43.0121252238289,39.5868681885329,2.34230536855727,1.61729061793121,2.0217820674694,10.7325346502102,3.513251959993,6.66716102857071,13.5046597354012,24.7155901250573,23.8808112021161,18.3202620007335,13.3056448874815,14.4873887613849,1.5089759505299,8.13156144721623,7.03804496655795,4.82230611340665,8.06337022754234,4.52727816478817,3.49829631893504,3.18454826909589,0,0,0,1.03562886267751,0.938104239924385,0.720248245844059,2.3674473558521,4.52557733019029,2.77680803197281,2.09280550275367,2.41446061259657,2.6856028744449,2.30383789878873,8.70087559619205,8.26901857367728,8.04099930839328,8.56245449635098,6.03928884421673,27.1274033647724,41.6763680136102,0.330418782983798,0.264450566663544,5.54549451391608,9.75394021813842,20.1033239662466,14.3195302482573,8.89512175379481,7.03834816616469,0.474529061544512,1.64698954724011,4.52403375840485,2.58643413653496,3.50935356814416,4.49409704327111,0.432276099749388,0.995706366271836,7.01771233526402,6.05517116831563,11.270773567308,7.33144780243131,12.9948166402309,6.94344616914154,12.2678882021059,8.11855813887812,6.43694784149637,3.45512058981041,0.296452627087149,1.00107063429656,1.37591296579242,0,0.405720242777006,0,0.25462585178142,0,0.486405680325106,0,0,1.11642284300551,0.312037673114561,0.252578877947112,0.358794827043824,0,0.554259570499814,3.03186258832776,3.58522948172457,2.8856664581782,4.69380496577004,5.3602002381381,5.95109102215034,4.29294025287157,5.51723004371669,6.86540537911202,3.50800491046472,2.13022309130459,0.863424909329478,1.88043776155965,0,0,1.47529281905711,5.24279817978992,51.0550876161178,41.1413019938633,0,3.7870639080656,0.315508219416257,0.780877488593277,0,0.716906393857656,1.55959071857676,2.83076530788832,1.21443210502468,0.876767573733936,1.58115111178609,8.03303291054518,6.10342366395555,2.31485284767432,1.14020871547503,3.29940245945071,0,3.39892890616974,3.62788268357701,1.13163047853539,4.13422650033082,2.45948118355142,1.80899805217755,1.09060118843252,0.712994756769443,2.21225730555071,4.21674434299995,2.06271086496374,4.08527526904546,19.0864759673189,20.4386720376752,13.5032332069903,11.3497749531055,9.45354733290974,7.24015690649332,6.39376393140658,13.6109590676952,0,0.661585194164886,18.3023740765043,6.13564821444441,9.288190438936,13.130957840345,22.6514441648185,2.33184669303881,59.5215219453736,0.341741761595705,4.12773735926445,1.29636169158798,0.376736914009382,0.683471138605126,0.457556346413045,0,0,0,0.954670618015114,10.2809197913869,8.94605655358134,8.8564379473877,6.690825472463,5.24070152990826,2.42755823492677,2.31429676030941,1.04702376793612,0.518459893167171,4.97071450469541,0,3.28936401296753,2.15096037594227,1.36115831840833,1.6790777052105,0.675824501963113,1.64300134104056,2.0832701575032,2.83120229949419,3.14059357073808,4.89651010638371,0,2.43270258348197,1.33524244314275,0.389762468933385,0.179026695667481,0.993406773906324,0.360586348559907,0.147689527174577,0.706765149637033,0.228620419965,0.100826185136841,0,0,0.233753804363138,4.0811469050738,0.221985953374065,0,0,1.9318959403219,5.63047426353546,3.11357761254351,0.214368379079066,0.501572104035363,49.6981621503019,41.4292712856459,56.1437603170609,50.5248356090442,34.2541259885321,43.0574521512129,38.4762825132129,39.1779446805072,32.6262534468627,26.9235362110946,6.33102820263478,33.9171142390876,20.4880326904961,15.5588298923708,12.5767897576789,8.64064489715066,13.5570503958985,14.4224540067226,15.0832028508153,14.1510438587727,16.4761544928656,13.9583492625696,12.0797544636148,13.1251562429982,11.6594001979895,12.3836359733599,10.5454736609819,12.1532808892134,14.4230065281157,14.8670909335741,15.4291163573437,12.4233064311536,15.2599161566285,18.0229556624087,13.7399695406383,13.3691080468849,11.5244622909847,18.6779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| ||
|short_description=p1@Ephb1 | |short_description=p1@Ephb1 | ||
}} | }} |
Latest revision as of 01:33, 26 September 2015
Short description: | p1@Ephb1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ephb1_5end |
Coexpression cluster: | MCL_coexpression_mm9:13 |
Association with transcript: | 20bp_to_ENSMUST00000035129, ENSMUST00000085169, ENSMUST00000149800, NM_001168296, NM_173447, uc009rfn.2, uc009rfo.2, uc012gzg.1_5end |
EntrezGene: | Ephb1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 6.51e-15 | 23 |
neuroblast (sensu Vertebrata) | 6.51e-15 | 23 |
neuron | 1.67e-08 | 33 |
neuronal stem cell | 1.67e-08 | 33 |
neuroblast | 1.67e-08 | 33 |
electrically signaling cell | 1.67e-08 | 33 |
ectodermal cell | 8.15e-07 | 44 |
neurectodermal cell | 8.15e-07 | 44 |
Ontology term | p-value | n |
---|---|---|
ecto-epithelium | 4.62e-26 | 73 |
regional part of nervous system | 7.97e-26 | 54 |
ectoderm-derived structure | 8.64e-25 | 95 |
ectoderm | 8.64e-25 | 95 |
presumptive ectoderm | 8.64e-25 | 95 |
neural tube | 1.27e-24 | 52 |
neural rod | 1.27e-24 | 52 |
future spinal cord | 1.27e-24 | 52 |
neural keel | 1.27e-24 | 52 |
neurectoderm | 3.44e-24 | 64 |
neural plate | 3.44e-24 | 64 |
presumptive neural plate | 3.44e-24 | 64 |
central nervous system | 2.58e-22 | 73 |
pre-chordal neural plate | 6.52e-22 | 49 |
brain | 8.78e-21 | 47 |
future brain | 8.78e-21 | 47 |
nervous system | 1.02e-20 | 75 |
regional part of brain | 1.04e-20 | 46 |
anterior neural tube | 1.41e-19 | 40 |
gray matter | 1.44e-19 | 34 |
regional part of forebrain | 7.40e-19 | 39 |
forebrain | 7.40e-19 | 39 |
future forebrain | 7.40e-19 | 39 |
structure with developmental contribution from neural crest | 8.62e-18 | 92 |
brain grey matter | 1.54e-16 | 29 |
regional part of telencephalon | 1.54e-16 | 29 |
telencephalon | 1.54e-16 | 29 |
cerebral cortex | 1.59e-11 | 21 |
cerebral hemisphere | 1.59e-11 | 21 |
pallium | 1.59e-11 | 21 |
regional part of cerebral cortex | 1.10e-09 | 17 |
occipital lobe | 6.18e-07 | 10 |
visual cortex | 6.18e-07 | 10 |
neocortex | 6.18e-07 | 10 |