FFCP PHASE1:Mm9::chr10:42894302..42894322,-: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=109205 | |EntrezGene=109205 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=Q0P5V2 | |UniProt=Q0P5V2 | ||
|association_with_transcript=13bp_to_ENSMUST00000040275,NM_175407,uc007ezf.1,uc007ezg.1_5end | |association_with_transcript=13bp_to_ENSMUST00000040275,NM_175407,uc007ezf.1,uc007ezg.1_5end | ||
|cluster_id=chr10:42894302..42894322,- | |||
|description=CAGE_peak_3_at_Sobp_5end | |description=CAGE_peak_3_at_Sobp_5end | ||
|id=chr10:42894302..42894322,- | |id=chr10:42894302..42894322,- | ||
|ontology_enrichment_celltype=CL:0000117!1.00e-11!23;CL:0000337!1.00e-11!23;CL:0000540!1.59e-10!33;CL:0000047!1.59e-10!33;CL:0000031!1.59e-10!33;CL:0000404!1.59e-10!33;CL:0000393!8.36e-08!39;CL:0000211!8.36e-08!39;CL:0000221!2.25e-07!44;CL:0000133!2.25e-07!44;CL:0002319!2.99e-07!43 | |ontology_enrichment_celltype=CL:0000117!1.00e-11!23;CL:0000337!1.00e-11!23;CL:0000540!1.59e-10!33;CL:0000047!1.59e-10!33;CL:0000031!1.59e-10!33;CL:0000404!1.59e-10!33;CL:0000393!8.36e-08!39;CL:0000211!8.36e-08!39;CL:0000221!2.25e-07!44;CL:0000133!2.25e-07!44;CL:0002319!2.99e-07!43 | ||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.67e-13,23;CL:0000337,1.67e-13,23;CL:0000540,9.73e-11,33;CL:0000047,9.73e-11,33;CL:0000031,9.73e-11,33;CL:0000404,9.73e-11,33;CL:0000221,1.64e-07,44;CL:0000133,1.64e-07,44;CL:0002319,2.29e-07,43;CL:0000393,2.30e-07,39;CL:0000211,2.30e-07,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.48e-22!73;UBERON:0005743!1.48e-22!73;UBERON:0000073!3.04e-21!75;UBERON:0001016!3.04e-21!75;UBERON:0001049!5.55e-21!52;UBERON:0005068!5.55e-21!52;UBERON:0006241!5.55e-21!52;UBERON:0007135!5.55e-21!52;UBERON:0000033!7.01e-21!63;UBERON:0002346!5.80e-20!71;UBERON:0003075!5.80e-20!71;UBERON:0007284!5.80e-20!71;UBERON:0000955!8.24e-20!50;UBERON:0006238!8.24e-20!50;UBERON:0004121!1.26e-19!102;UBERON:0000924!1.26e-19!102;UBERON:0006601!1.26e-19!102;UBERON:0002616!3.40e-19!49;UBERON:0003056!1.63e-17!49;UBERON:0002020!5.22e-17!34;UBERON:0003080!2.90e-16!40;UBERON:0002780!1.04e-15!39;UBERON:0001890!1.04e-15!39;UBERON:0006240!1.04e-15!39;UBERON:0002791!1.19e-14!29;UBERON:0003528!1.19e-14!29;UBERON:0001893!1.19e-14!29;UBERON:0000153!1.71e-11!94;UBERON:0000956!3.30e-11!21;UBERON:0001869!3.30e-11!21;UBERON:0000203!3.30e-11!21;UBERON:0007811!1.29e-10!86;UBERON:0002619!6.82e-09!17;UBERON:0002021!3.23e-08!10;UBERON:0000411!3.23e-08!10;UBERON:0001950!3.23e-08!10;UBERON:0000468!2.25e-07!333 | |ontology_enrichment_uberon=UBERON:0001017!1.48e-22!73;UBERON:0005743!1.48e-22!73;UBERON:0000073!3.04e-21!75;UBERON:0001016!3.04e-21!75;UBERON:0001049!5.55e-21!52;UBERON:0005068!5.55e-21!52;UBERON:0006241!5.55e-21!52;UBERON:0007135!5.55e-21!52;UBERON:0000033!7.01e-21!63;UBERON:0002346!5.80e-20!71;UBERON:0003075!5.80e-20!71;UBERON:0007284!5.80e-20!71;UBERON:0000955!8.24e-20!50;UBERON:0006238!8.24e-20!50;UBERON:0004121!1.26e-19!102;UBERON:0000924!1.26e-19!102;UBERON:0006601!1.26e-19!102;UBERON:0002616!3.40e-19!49;UBERON:0003056!1.63e-17!49;UBERON:0002020!5.22e-17!34;UBERON:0003080!2.90e-16!40;UBERON:0002780!1.04e-15!39;UBERON:0001890!1.04e-15!39;UBERON:0006240!1.04e-15!39;UBERON:0002791!1.19e-14!29;UBERON:0003528!1.19e-14!29;UBERON:0001893!1.19e-14!29;UBERON:0000153!1.71e-11!94;UBERON:0000956!3.30e-11!21;UBERON:0001869!3.30e-11!21;UBERON:0000203!3.30e-11!21;UBERON:0007811!1.29e-10!86;UBERON:0002619!6.82e-09!17;UBERON:0002021!3.23e-08!10;UBERON:0000411!3.23e-08!10;UBERON:0001950!3.23e-08!10;UBERON:0000468!2.25e-07!333 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.45e-24,54;UBERON:0001017,3.14e-24,73;UBERON:0002346,9.56e-24,64;UBERON:0003075,9.56e-24,64;UBERON:0007284,9.56e-24,64;UBERON:0001049,1.81e-23,52;UBERON:0005068,1.81e-23,52;UBERON:0006241,1.81e-23,52;UBERON:0007135,1.81e-23,52;UBERON:0001016,8.00e-23,75;UBERON:0004121,5.16e-22,95;UBERON:0000924,5.16e-22,95;UBERON:0006601,5.16e-22,95;UBERON:0010371,1.44e-21,73;UBERON:0000955,1.13e-20,47;UBERON:0006238,1.13e-20,47;UBERON:0002616,5.72e-20,46;UBERON:0002020,1.41e-19,34;UBERON:0003056,5.55e-19,49;UBERON:0003080,4.50e-18,40;UBERON:0002780,1.99e-17,39;UBERON:0001890,1.99e-17,39;UBERON:0006240,1.99e-17,39;UBERON:0010314,2.50e-17,92;UBERON:0003528,8.28e-17,29;UBERON:0002791,8.28e-17,29;UBERON:0001893,8.28e-17,29;UBERON:0000956,9.26e-13,21;UBERON:0001869,9.26e-13,21;UBERON:0000203,9.26e-13,21;UBERON:0002619,4.79e-10,17;UBERON:0002021,2.19e-09,10;UBERON:0000411,2.19e-09,10;UBERON:0001950,2.19e-09,10 | |||
|phase1_expression=2.40223270657191,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14660173558958,0.198581902401771,2.08959831311148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,4.69434806608824,0.218025156380447,0.659058548203415,0,0.139986421625363,0,0,0,0,0.257259436035947,0.85960031981627,0.515672092277442,10.7227724255587,13.2247744818008,13.9442908771359,0.338844532069132,0.889294796111139,0.449949858640699,0,0,1.19840044207362,3.07374644257244,10.8874092923902,11.2054928815303,8.62332341540666,6.85562362569129,6.40518768759679,7.34944795289724,5.94241920313065,8.27296907949019,2.20231761998777,9.83192503255945,9.21639199537461,12.0016521834476,12.8997577479398,7.29278718779464,3.90856198601933,5.06486349028512,5.50073691996516,6.48182888042069,6.12198227436143,9.69277118291563,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0,0,0,1.82577746171277,0.340860645156116,0.519572009205738,0,2.53518155598025,0,10.1922095882658,14.2213340630666,0,0,0,0.34255163915718,0.258937883647172,0.890652834388949,0.867426633830679,0.304465478312141,1.15307748628029,0.150722640552623,0.705532242814229,0.502666365318702,0.247194967734374,0.722996784599558,0,3.88240439873782,6.8460870722722,5.33362778448744,1.86391761218122,17.2740670236813,17.8029700791437,0.510914110417183,0,0,0,8.68785708547972,10.980014467647,5.90575454930463,20.5112697826886,17.3886510984625,7.48036960414416,7.46309810111685,0.611036183101898,1.49288364732112,0,2.31486041475121,0.910843100738926,1.60931473103431,2.70093194708024,4.37043971723574,3.60593445502038,4.86832137082429,3.37326208415024,5.69147415625834,1.07783996466421,3.59301552318857,4.04687585577082,2.6303487891309,2.78047249225598,4.179025998266,1.85203922767149,0.995171334092466,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.473489471170421,1.37734962223183,1.54267112887378,0.465067889500816,1.07309360559848,2.10177616260905,3.12663714835613,2.29834449710733,2.67527071501324,3.94739966048397,2.19550115291051,2.81833479396781,21.6598647021051,19.6547809644433,0,0.264450566663544,1.06644125267617,0.464473343720877,1.28867461322093,1.00841762311671,0.667134131534611,0.380451252225118,0.949058123089023,0.823494773620054,0,0.795825888164603,0.779856348476481,0.898819408654221,1.08069024937347,1.39398891278057,0.569003702859245,1.25673363870702,3.38123207019241,0.814605311381257,0.581857461502877,0.210407459670956,0.822074982615345,0.147610147979602,0.156998727841375,0.123397163921801,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0,0,0.37898282354097,0.814824882210129,0.169745085775188,0.469380496577004,0.167506257441816,0.238043640886014,0.780534591431195,0.157635144106191,1.10732344824387,0.478364305972461,0.655453258862952,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,5.45872005958493,5.74337264301796,0,8.33154059774431,1.57754109708128,1.56175497718655,0.861693590931196,0.716906393857656,1.33679204449436,1.69845918473299,0.809621403349789,1.46127928955656,2.37172666767914,10.9249247583414,3.69044221541498,0.712262414669021,1.30309567482861,3.62934270539578,2.65490276679926,0.242780636154981,0.906970670894253,0.565815239267694,0.590603785761546,0,1.03371317267288,0.363533729477506,1.42598951353889,0.632073515871632,0,0,5.44703369206061,1.62054984628179,1.16422815404479,1.50035924522115,4.25616560741457,3.56737635204141,1.81003922662333,0.913394847343798,0.469343416127421,0.21183207086382,0.882113592219848,4.28704257647848,1.77610869365496,1.38719727334758,0.358117032009409,0.492422699235184,0,6.86073617438886,0,0.206386867963223,0,0,0,0,0,0,0,1.90934123603023,0.474503990371703,2.03319467126849,0.648032044930808,0.418176592028937,0.655087691238533,1.07891477107857,1.40510874733071,0.785267825952089,0.648074866458964,0,1.69107881605257,0.897099276263873,0.330916980914195,0.777804753376191,0.904118764344118,1.35164900392623,2.34714477291508,1.95306577265925,4.61381115473128,1.20792060413003,1.15212002503146,0.632022241256357,0.202725215290164,0.616265742988964,0.389762468933385,0.179026695667481,0.198681354781265,0.240390899039938,0.443068581523732,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,5.66825959038028,0,0.179427713218951,0,0.965947970160952,1.12609485270709,2.38097111547445,0,0,24.8490810751509,27.1591889539234,28.0718801585304,17.1853182343688,21.2375581128899,26.4387864086395,17.550585006027,21.1650965515384,21.7508356312418,20.192652158321,1.45302286617847,7.98049746802062,3.07320490357441,4.132814190161,4.82110274044359,5.33146174505041,3.33370091702423,3.7086310303001,6.4183841918363,4.80124702351215,7.35089969681695,4.71565853465191,5.52484894072306,5.37811280200902,5.68611142660571,8.57328644309533,4.75125736373908,5.78727661391115,6.59337441285291,4.71036544430071,5.14303878578123,5.14679837862079,4.29185141905178,7.99405291477807,5.08190654242785,4.82303264982556,5.3049112133104,6.05060336307039,5.29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| |phase1_expression=2.40223270657191,0,0,0,0.500895729946347,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,3.14660173558958,0.198581902401771,2.08959831311148,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.125896817975577,0.101376931219515,0,4.69434806608824,0.218025156380447,0.659058548203415,0,0.139986421625363,0,0,0,0,0.257259436035947,0.85960031981627,0.515672092277442,10.7227724255587,13.2247744818008,13.9442908771359,0.338844532069132,0.889294796111139,0.449949858640699,0,0,1.19840044207362,3.07374644257244,10.8874092923902,11.2054928815303,8.62332341540666,6.85562362569129,6.40518768759679,7.34944795289724,5.94241920313065,8.27296907949019,2.20231761998777,9.83192503255945,9.21639199537461,12.0016521834476,12.8997577479398,7.29278718779464,3.90856198601933,5.06486349028512,5.50073691996516,6.48182888042069,6.12198227436143,9.69277118291563,0.075726193333184,0.0755715601067855,0.289864488701678,0,0,0,0,0,1.82577746171277,0.340860645156116,0.519572009205738,0,2.53518155598025,0,10.1922095882658,14.2213340630666,0,0,0,0.34255163915718,0.258937883647172,0.890652834388949,0.867426633830679,0.304465478312141,1.15307748628029,0.150722640552623,0.705532242814229,0.502666365318702,0.247194967734374,0.722996784599558,0,3.88240439873782,6.8460870722722,5.33362778448744,1.86391761218122,17.2740670236813,17.8029700791437,0.510914110417183,0,0,0,8.68785708547972,10.980014467647,5.90575454930463,20.5112697826886,17.3886510984625,7.48036960414416,7.46309810111685,0.611036183101898,1.49288364732112,0,2.31486041475121,0.910843100738926,1.60931473103431,2.70093194708024,4.37043971723574,3.60593445502038,4.86832137082429,3.37326208415024,5.69147415625834,1.07783996466421,3.59301552318857,4.04687585577082,2.6303487891309,2.78047249225598,4.179025998266,1.85203922767149,0.995171334092466,0,0,0,0.621377317606506,0.234526059981096,0.540186184383045,0.473489471170421,1.37734962223183,1.54267112887378,0.465067889500816,1.07309360559848,2.10177616260905,3.12663714835613,2.29834449710733,2.67527071501324,3.94739966048397,2.19550115291051,2.81833479396781,21.6598647021051,19.6547809644433,0,0.264450566663544,1.06644125267617,0.464473343720877,1.28867461322093,1.00841762311671,0.667134131534611,0.380451252225118,0.949058123089023,0.823494773620054,0,0.795825888164603,0.779856348476481,0.898819408654221,1.08069024937347,1.39398891278057,0.569003702859245,1.25673363870702,3.38123207019241,0.814605311381257,0.581857461502877,0.210407459670956,0.822074982615345,0.147610147979602,0.156998727841375,0.123397163921801,0,0.166845105716094,0,0,0.202860121388503,0.241177159752417,0,0,0,0,0,0,0.312037673114561,0.252578877947112,0.179397413521912,0,0,0.37898282354097,0.814824882210129,0.169745085775188,0.469380496577004,0.167506257441816,0.238043640886014,0.780534591431195,0.157635144106191,1.10732344824387,0.478364305972461,0.655453258862952,0.172684981865896,0.433947175744535,0,0,0,0.275936746304732,5.45872005958493,5.74337264301796,0,8.33154059774431,1.57754109708128,1.56175497718655,0.861693590931196,0.716906393857656,1.33679204449436,1.69845918473299,0.809621403349789,1.46127928955656,2.37172666767914,10.9249247583414,3.69044221541498,0.712262414669021,1.30309567482861,3.62934270539578,2.65490276679926,0.242780636154981,0.906970670894253,0.565815239267694,0.590603785761546,0,1.03371317267288,0.363533729477506,1.42598951353889,0.632073515871632,0,0,5.44703369206061,1.62054984628179,1.16422815404479,1.50035924522115,4.25616560741457,3.56737635204141,1.81003922662333,0.913394847343798,0.469343416127421,0.21183207086382,0.882113592219848,4.28704257647848,1.77610869365496,1.38719727334758,0.358117032009409,0.492422699235184,0,6.86073617438886,0,0.206386867963223,0,0,0,0,0,0,0,1.90934123603023,0.474503990371703,2.03319467126849,0.648032044930808,0.418176592028937,0.655087691238533,1.07891477107857,1.40510874733071,0.785267825952089,0.648074866458964,0,1.69107881605257,0.897099276263873,0.330916980914195,0.777804753376191,0.904118764344118,1.35164900392623,2.34714477291508,1.95306577265925,4.61381115473128,1.20792060413003,1.15212002503146,0.632022241256357,0.202725215290164,0.616265742988964,0.389762468933385,0.179026695667481,0.198681354781265,0.240390899039938,0.443068581523732,0.100966449948148,0,0,0.0974578807397524,0.0962118416403295,0,5.66825959038028,0,0.179427713218951,0,0.965947970160952,1.12609485270709,2.38097111547445,0,0,24.8490810751509,27.1591889539234,28.0718801585304,17.1853182343688,21.2375581128899,26.4387864086395,17.550585006027,21.1650965515384,21.7508356312418,20.192652158321,1.45302286617847,7.98049746802062,3.07320490357441,4.132814190161,4.82110274044359,5.33146174505041,3.33370091702423,3.7086310303001,6.4183841918363,4.80124702351215,7.35089969681695,4.71565853465191,5.52484894072306,5.37811280200902,5.68611142660571,8.57328644309533,4.75125736373908,5.78727661391115,6.59337441285291,4.71036544430071,5.14303878578123,5.14679837862079,4.29185141905178,7.99405291477807,5.08190654242785,4.82303264982556,5.3049112133104,6.05060336307039,5.29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| ||
|short_description=p3@Sobp | |short_description=p3@Sobp | ||
}} | }} |
Latest revision as of 00:49, 26 September 2015
Short description: | p3@Sobp |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Sobp_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 13bp_to_ENSMUST00000040275, NM_175407, uc007ezf.1, uc007ezg.1_5end |
EntrezGene: | Sobp |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.67e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.67e-13 | 23 |
neuron | 9.73e-11 | 33 |
neuronal stem cell | 9.73e-11 | 33 |
neuroblast | 9.73e-11 | 33 |
electrically signaling cell | 9.73e-11 | 33 |
ectodermal cell | 1.64e-07 | 44 |
neurectodermal cell | 1.64e-07 | 44 |
neural cell | 2.29e-07 | 43 |
electrically responsive cell | 2.30e-07 | 39 |
electrically active cell | 2.30e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.45e-24 | 54 |
central nervous system | 3.14e-24 | 73 |
neurectoderm | 9.56e-24 | 64 |
neural plate | 9.56e-24 | 64 |
presumptive neural plate | 9.56e-24 | 64 |
neural tube | 1.81e-23 | 52 |
neural rod | 1.81e-23 | 52 |
future spinal cord | 1.81e-23 | 52 |
neural keel | 1.81e-23 | 52 |
nervous system | 8.00e-23 | 75 |
ectoderm-derived structure | 5.16e-22 | 95 |
ectoderm | 5.16e-22 | 95 |
presumptive ectoderm | 5.16e-22 | 95 |
ecto-epithelium | 1.44e-21 | 73 |
brain | 1.13e-20 | 47 |
future brain | 1.13e-20 | 47 |
regional part of brain | 5.72e-20 | 46 |
gray matter | 1.41e-19 | 34 |
pre-chordal neural plate | 5.55e-19 | 49 |
anterior neural tube | 4.50e-18 | 40 |
regional part of forebrain | 1.99e-17 | 39 |
forebrain | 1.99e-17 | 39 |
future forebrain | 1.99e-17 | 39 |
structure with developmental contribution from neural crest | 2.50e-17 | 92 |
brain grey matter | 8.28e-17 | 29 |
regional part of telencephalon | 8.28e-17 | 29 |
telencephalon | 8.28e-17 | 29 |
cerebral cortex | 9.26e-13 | 21 |
cerebral hemisphere | 9.26e-13 | 21 |
pallium | 9.26e-13 | 21 |
regional part of cerebral cortex | 4.79e-10 | 17 |
occipital lobe | 2.19e-09 | 10 |
visual cortex | 2.19e-09 | 10 |
neocortex | 2.19e-09 | 10 |