FFCP PHASE1:Mm9::chr2:155890916..155891018,+: Difference between revisions
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{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=245865 | |EntrezGene=245865 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q9JJF2,Q8BLQ4,B7ZCP3 | |UniProt=Q9JJF2,Q8BLQ4,B7ZCP3 | ||
|association_with_transcript=0bp_to_ENSMUST00000038860,ENSMUST00000125996,ENSMUST00000136765,NM_139151,uc008nmb.2,uc008nmc.1,uc008nmd.1_5end | |association_with_transcript=0bp_to_ENSMUST00000038860,ENSMUST00000125996,ENSMUST00000136765,NM_139151,uc008nmb.2,uc008nmc.1,uc008nmd.1_5end | ||
|cluster_id=chr2:155890916..155891018,+ | |||
|description=CAGE_peak_1_at_Spag4_5end | |description=CAGE_peak_1_at_Spag4_5end | ||
|id=chr2:155890916..155891018,+ | |id=chr2:155890916..155891018,+ | ||
|ontology_enrichment_celltype=CL:0002319!8.25e-15!43;CL:0000055!2.07e-14!50;CL:0000221!2.95e-14!44;CL:0000133!2.95e-14!44;CL:0000393!1.13e-12!39;CL:0000211!1.13e-12!39;CL:0000540!3.91e-12!33;CL:0000047!3.91e-12!33;CL:0000031!3.91e-12!33;CL:0000404!3.91e-12!33;CL:0000117!4.26e-11!23;CL:0000337!4.26e-11!23;CL:0000548!3.45e-09!115;CL:0000004!3.45e-09!115;CL:0000255!3.45e-09!115;CL:0000034!7.26e-09!97;CL:0000144!7.36e-09!121;CL:0000012!7.36e-09!121;CL:0002321!1.23e-08!70;CL:0000220!1.23e-08!70;CL:0000723!1.59e-08!91;CL:0000048!1.59e-08!91;CL:0002371!4.77e-08!118 | |ontology_enrichment_celltype=CL:0002319!8.25e-15!43;CL:0000055!2.07e-14!50;CL:0000221!2.95e-14!44;CL:0000133!2.95e-14!44;CL:0000393!1.13e-12!39;CL:0000211!1.13e-12!39;CL:0000540!3.91e-12!33;CL:0000047!3.91e-12!33;CL:0000031!3.91e-12!33;CL:0000404!3.91e-12!33;CL:0000117!4.26e-11!23;CL:0000337!4.26e-11!23;CL:0000548!3.45e-09!115;CL:0000004!3.45e-09!115;CL:0000255!3.45e-09!115;CL:0000034!7.26e-09!97;CL:0000144!7.36e-09!121;CL:0000012!7.36e-09!121;CL:0002321!1.23e-08!70;CL:0000220!1.23e-08!70;CL:0000723!1.59e-08!91;CL:0000048!1.59e-08!91;CL:0002371!4.77e-08!118 | ||
|ontology_enrichment_celltype_v019_2=CL:0002319,2.31e-15,43;CL:0000221,1.81e-14,44;CL:0000133,1.81e-14,44;CL:0000393,3.89e-13,39;CL:0000211,3.89e-13,39;CL:0000540,1.41e-12,33;CL:0000047,1.41e-12,33;CL:0000031,1.41e-12,33;CL:0000404,1.41e-12,33;CL:0000117,1.70e-11,23;CL:0000337,1.70e-11,23;CL:0000034,2.65e-10,97;CL:0000723,6.42e-10,91;CL:0000048,6.42e-10,91;CL:0002321,4.87e-09,70 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!8.47e-25!73;UBERON:0005743!8.47e-25!73;UBERON:0000073!1.02e-24!75;UBERON:0001016!1.02e-24!75;UBERON:0001049!5.86e-18!52;UBERON:0005068!5.86e-18!52;UBERON:0006241!5.86e-18!52;UBERON:0007135!5.86e-18!52;UBERON:0000955!1.92e-17!50;UBERON:0006238!1.92e-17!50;UBERON:0002616!4.23e-17!49;UBERON:0004121!1.70e-16!102;UBERON:0000924!1.70e-16!102;UBERON:0006601!1.70e-16!102;UBERON:0002346!1.71e-16!71;UBERON:0003075!1.71e-16!71;UBERON:0007284!1.71e-16!71;UBERON:0000033!2.81e-15!63;UBERON:0002020!1.30e-13!34;UBERON:0003080!2.49e-13!40;UBERON:0002780!4.97e-13!39;UBERON:0001890!4.97e-13!39;UBERON:0006240!4.97e-13!39;UBERON:0003056!5.84e-13!49;UBERON:0007811!3.90e-12!86;UBERON:0000153!7.46e-12!94;UBERON:0002791!8.66e-12!29;UBERON:0003528!8.66e-12!29;UBERON:0001893!8.66e-12!29;UBERON:0000956!9.50e-09!21;UBERON:0001869!9.50e-09!21;UBERON:0000203!9.50e-09!21;UBERON:0002619!7.28e-08!17 | |ontology_enrichment_uberon=UBERON:0001017!8.47e-25!73;UBERON:0005743!8.47e-25!73;UBERON:0000073!1.02e-24!75;UBERON:0001016!1.02e-24!75;UBERON:0001049!5.86e-18!52;UBERON:0005068!5.86e-18!52;UBERON:0006241!5.86e-18!52;UBERON:0007135!5.86e-18!52;UBERON:0000955!1.92e-17!50;UBERON:0006238!1.92e-17!50;UBERON:0002616!4.23e-17!49;UBERON:0004121!1.70e-16!102;UBERON:0000924!1.70e-16!102;UBERON:0006601!1.70e-16!102;UBERON:0002346!1.71e-16!71;UBERON:0003075!1.71e-16!71;UBERON:0007284!1.71e-16!71;UBERON:0000033!2.81e-15!63;UBERON:0002020!1.30e-13!34;UBERON:0003080!2.49e-13!40;UBERON:0002780!4.97e-13!39;UBERON:0001890!4.97e-13!39;UBERON:0006240!4.97e-13!39;UBERON:0003056!5.84e-13!49;UBERON:0007811!3.90e-12!86;UBERON:0000153!7.46e-12!94;UBERON:0002791!8.66e-12!29;UBERON:0003528!8.66e-12!29;UBERON:0001893!8.66e-12!29;UBERON:0000956!9.50e-09!21;UBERON:0001869!9.50e-09!21;UBERON:0000203!9.50e-09!21;UBERON:0002619!7.28e-08!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.01e-26,73;UBERON:0001016,1.09e-25,75;UBERON:0000073,7.89e-20,54;UBERON:0002346,3.47e-19,64;UBERON:0003075,3.47e-19,64;UBERON:0007284,3.47e-19,64;UBERON:0001049,1.21e-18,52;UBERON:0005068,1.21e-18,52;UBERON:0006241,1.21e-18,52;UBERON:0007135,1.21e-18,52;UBERON:0004121,1.15e-17,95;UBERON:0000924,1.15e-17,95;UBERON:0006601,1.15e-17,95;UBERON:0000955,1.97e-16,47;UBERON:0006238,1.97e-16,47;UBERON:0002616,4.40e-16,46;UBERON:0002020,4.07e-14,34;UBERON:0010371,7.41e-14,73;UBERON:0003080,8.05e-14,40;UBERON:0003056,1.54e-13,49;UBERON:0002780,1.65e-13,39;UBERON:0001890,1.65e-13,39;UBERON:0006240,1.65e-13,39;UBERON:0003528,3.24e-12,29;UBERON:0002791,3.24e-12,29;UBERON:0001893,3.24e-12,29;UBERON:0010314,6.89e-11,92;UBERON:0000956,4.76e-09,21;UBERON:0001869,4.76e-09,21;UBERON:0000203,4.76e-09,21;UBERON:0002619,3.97e-08,17 | |||
|phase1_expression=4.16387002472464,0,0,0.60492842261366,0.500895729946347,0.839396359559449,0.700837921786577,3.35720640948098,10.98152032783,11.2350972634557,4.79410311031414,1.83475965689274,2.22560948910567,1.04904482902797,1.99865857089398,1.41732687172878,2.09868563438444,0.315462165358238,1.23402990245165,2.12194825899015,44.3925974588584,2.58156473122302,2.35079810225042,0.319984845586813,0,1.14846392823004,0,0,0,0.252030129759931,0.665191531965914,7.62036808151557,4.92051830067656,15.8481681015439,0.866554859253824,0.498703936075477,1.83752420636132,0.837063261473815,0,0,0,0,0,3.27331726736501,4.76471576731718,4.40512205188036,5.47673941043627,3.92445281484804,4.39372365468944,7.58276606389705,2.51975558925653,4.31257693094915,8.72469551500229,9.42970784614748,7.39406358113421,1.28629718017973,2.0057340795713,2.57836046138721,5.86717736492834,5.81890077199236,10.775133859605,2.71075625655306,2.66788438833342,0,0,0.7104801149461,4.19440154725767,3.07374644257244,4.04389488003063,3.10513658162888,3.99617426567626,3.71346279724945,4.63823935998388,3.79721477566358,4.12135525378416,10.1114066527102,6.60695285996332,5.2351808614927,4.76180253094355,6.59431438650969,4.66586982372289,4.16730696445408,6.14202597803038,5.6276261003168,4.73674568108111,5.89257170947335,3.13217697758026,4.28718725398191,1.81742863999642,2.64500460373749,1.15945795480671,0,0,0,0,0,4.49422144421606,2.21559419351475,1.55871602761721,3.18005617059306,0.985903938436763,3.84979432242953,10.1922095882658,14.2213340630666,3.030874574157,2.28023878927589,2.52762222507392,4.90990682791958,0.517875767294343,1.03909497345377,3.64319186208885,1.82679286987285,2.07553947530453,0.60289056221049,1.29347577849275,0.628332956648377,0.494389935468748,0.578397427679647,1.76922110389975,0.647067399789637,0.220841518460394,0.969750506270444,0,2.63502717310392,3.35114730901528,0.766371165625774,2.75574786363617,5.39912457894067,2.1601938602421,3.74476598512057,2.28750301409313,3.64397621127307,3.12883776346098,3.83573185995496,4.57133698031032,3.89379031362618,1.62942982160506,1.11966273549084,0.252722758433675,0.210441855886474,3.25301107406759,3.44853156650209,3.06105620669094,3.31550599238573,2.4493139694478,3.07472928683639,2.24884138943349,1.03481348295606,2.15567992932842,5.48407632486676,3.69497360744293,1.09597866213787,2.22437799380478,0.696504333044333,1.85203922767149,3.58261680273288,3.51106593656617,2.31613116403244,3.12579849335152,1.24275463521301,2.57978665979206,1.80062061461015,1.18372367792605,1.18058539048442,1.54267112887378,1.39520366850245,1.60964040839772,0.467061369468678,0.822799249567402,0.492502392237286,0.405344047729279,0,0.439100230582101,0.268412837520744,3.15434922846191,5.14523061896422,0,0,4.05247676016945,3.0190767341857,2.06187938115349,1.61346819698674,1.11189021922435,0.951128130562796,0,0.329397909448022,0.251335208800269,0,1.75467678407208,0,0.648414149624083,0.398282546508734,4.1726938209678,3.42745537829186,0,0.814605311381257,1.35766741017338,2.10407459670956,1.07502113111237,0.442830443938806,0.784993639206874,0.370191491765402,0.296452627087149,1.66845105716094,1.76903095601883,2.02375901146368,0.608580364165509,1.68824011826692,0.50925170356284,0.863088412352432,0.810676133875177,0.823684239564244,0,0.744281895337007,0,0.505157755894224,0.179397413521912,0,0.184753190166605,3.22135400009824,2.77040459951444,2.71592137240301,3.28566347603903,1.67506257441816,0.476087281772027,1.36593553500459,1.10344600874334,1.99318220683897,1.91345722388985,0.491589944147214,0.345369963731791,0.144649058581512,0,0,0.491764273019036,0.827810238914197,5.77982123956051,4.68846746368813,0.983609672260053,0.504941854408746,3.47059041357882,2.73307121007647,3.87762115919038,2.86762557543062,2.00518806674155,3.39691836946599,2.02405350837447,4.67609372658099,1.97643888973262,3.85585579706168,1.27746076687442,1.78065603667255,1.30309567482861,0.824850614862677,0,2.18502572539483,1.209294227859,1.13163047853539,0.590603785761546,1.22974059177571,0.516856586336442,0.727067458955011,1.06949213515416,0,0,0,2.04263763452273,4.86164953884538,4.01011919726539,2.7863814554107,2.48276327099183,1.78368817602071,2.79733335023606,2.13125464380219,0,0.42366414172764,0.441056796109924,0.65954501176592,0.807322133479528,0.603129249281559,0.835606408021955,0.164140899745061,0,4.82105785227325,1.02522528478712,1.03193433981611,1.29636169158798,0.565105371014073,0.136694227721025,0.457556346413045,3.90950388985867,4.19854356970974,3.59319931891502,0,3.79603192297362,3.25311147402958,1.29606408986162,2.29997125615916,1.74690050996942,1.21377911746339,0.991841468704031,0.523511883968059,0.259229946583586,0,226.04086841236,3.58839710505549,1.98550188548517,2.33341426012857,1.6790777052105,1.01373675294467,1.5256441023948,1.17183946359555,2.30690557736564,11.5960377996483,178.002543867361,0.632022241256357,1.21635129174099,0.821687657318618,0.77952493786677,1.07416017400489,0.993406773906324,0.841368146639782,0.738447635872886,1.00966449948148,0.6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| ||
|short_description=p1@Spag4 | |short_description=p1@Spag4 | ||
}} | }} |
Latest revision as of 23:48, 25 September 2015
Short description: | p1@Spag4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spag4_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | 0bp_to_ENSMUST00000038860, ENSMUST00000125996, ENSMUST00000136765, NM_139151, uc008nmb.2, uc008nmc.1, uc008nmd.1_5end |
EntrezGene: | Spag4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neural cell | 2.31e-15 | 43 |
ectodermal cell | 1.81e-14 | 44 |
neurectodermal cell | 1.81e-14 | 44 |
electrically responsive cell | 3.89e-13 | 39 |
electrically active cell | 3.89e-13 | 39 |
neuron | 1.41e-12 | 33 |
neuronal stem cell | 1.41e-12 | 33 |
neuroblast | 1.41e-12 | 33 |
electrically signaling cell | 1.41e-12 | 33 |
CNS neuron (sensu Vertebrata) | 1.70e-11 | 23 |
neuroblast (sensu Vertebrata) | 1.70e-11 | 23 |
stem cell | 2.65e-10 | 97 |
somatic stem cell | 6.42e-10 | 91 |
multi fate stem cell | 6.42e-10 | 91 |
embryonic cell | 4.87e-09 | 70 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.01e-26 | 73 |
nervous system | 1.09e-25 | 75 |
regional part of nervous system | 7.89e-20 | 54 |
neurectoderm | 3.47e-19 | 64 |
neural plate | 3.47e-19 | 64 |
presumptive neural plate | 3.47e-19 | 64 |
neural tube | 1.21e-18 | 52 |
neural rod | 1.21e-18 | 52 |
future spinal cord | 1.21e-18 | 52 |
neural keel | 1.21e-18 | 52 |
ectoderm-derived structure | 1.15e-17 | 95 |
ectoderm | 1.15e-17 | 95 |
presumptive ectoderm | 1.15e-17 | 95 |
brain | 1.97e-16 | 47 |
future brain | 1.97e-16 | 47 |
regional part of brain | 4.40e-16 | 46 |
gray matter | 4.07e-14 | 34 |
ecto-epithelium | 7.41e-14 | 73 |
anterior neural tube | 8.05e-14 | 40 |
pre-chordal neural plate | 1.54e-13 | 49 |
regional part of forebrain | 1.65e-13 | 39 |
forebrain | 1.65e-13 | 39 |
future forebrain | 1.65e-13 | 39 |
brain grey matter | 3.24e-12 | 29 |
regional part of telencephalon | 3.24e-12 | 29 |
telencephalon | 3.24e-12 | 29 |
structure with developmental contribution from neural crest | 6.89e-11 | 92 |
cerebral cortex | 4.76e-09 | 21 |
cerebral hemisphere | 4.76e-09 | 21 |
pallium | 4.76e-09 | 21 |
regional part of cerebral cortex | 3.97e-08 | 17 |