FFCP PHASE1:Mm9::chr10:23507021..23507058,-: Difference between revisions
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{{FFCP|EntrezGene=100038969,100503211,20042,434843,626048,665463,665522,665579,665611,670832|HGNC=|MCL_coexpression_id=0|UniProt=Q6ZWZ6|association_with_transcript=-6bp_to_ENSMUST00000073926,NM_011295,uc007epw.2,uc007epx.2_5end|description=CAGE_peak_2_at_Gm10279_5end,CAGE_peak_2_at_Gm14059_5end,CAGE_peak_2_at_Gm14958_5end,CAGE_peak_2_at_Gm5642_5end,CAGE_peak_2_at_Gm6646_5end,CAGE_peak_2_at_Gm7643_5end,CAGE_peak_2_at_Gm7671_5end,CAGE_peak_2_at_Gm7698_5end,CAGE_peak_2_at_Gm7711_5end,CAGE_peak_2_at_Rps12_5end|id=chr10:23507021..23507058,-|ontology_enrichment_celltype=CL:0000117!1.31e-12!23;CL:0000337!1.31e-12!23;CL:0000393!5.06e-07!39;CL:0000211!5.06e-07!39|ontology_enrichment_celltype_v019_2=CL:0000117,3.39e-15,23;CL:0000337,3.39e-15,23;CL:0000393,1.05e-08,39;CL:0000211,1.05e-08,39;CL:0000540,4.32e-08,33;CL:0000047,4.32e-08,33;CL:0000031,4.32e-08,33;CL:0000404,4.32e-08,33;CL:0000221,6.89e-07,44;CL:0000133,6.89e-07,44;CL:0002319,8.12e-07,43|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.63e-20!52;UBERON:0005068!2.63e-20!52;UBERON:0006241!2.63e-20!52;UBERON:0007135!2.63e-20!52;UBERON:0000955!1.57e-19!50;UBERON:0006238!1.57e-19!50;UBERON:0002616!5.75e-19!49;UBERON:0000073!3.32e-18!75;UBERON:0001016!3.32e-18!75;UBERON:0001017!3.34e-18!73;UBERON:0005743!3.34e-18!73;UBERON:0002020!9.28e-17!34;UBERON:0000033!5.29e-16!63;UBERON:0003080!8.13e-16!40;UBERON:0002346!9.22e-16!71;UBERON:0003075!9.22e-16!71;UBERON:0007284!9.22e-16!71;UBERON:0002780!2.30e-15!39;UBERON:0001890!2.30e-15!39;UBERON:0006240!2.30e-15!39;UBERON:0004121!3.81e-14!102;UBERON:0000924!3.81e-14!102;UBERON:0006601!3.81e-14!102;UBERON:0002791!3.87e-14!29;UBERON:0003528!3.87e-14!29;UBERON:0001893!3.87e-14!29;UBERON:0003056!6.33e-14!49;UBERON:0000956!7.29e-10!21;UBERON:0001869!7.29e-10!21;UBERON:0000203!7.29e-10!21;UBERON:0007811!5.42e-09!86;UBERON:0000153!1.58e-08!94;UBERON:0002619!4.00e-08!17;UBERON:0002021!5.79e-08!10;UBERON:0000411!5.79e-08!10;UBERON:0001950!5.79e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.18e-27,54;UBERON:0001049,3.75e-25,52;UBERON:0005068,3.75e-25,52;UBERON:0006241,3.75e-25,52;UBERON:0007135,3.75e-25,52;UBERON:0001017,5.91e-23,73;UBERON:0001016,1.44e-22,75;UBERON:0000955,6.91e-22,47;UBERON:0006238,6.91e-22,47;UBERON:0002346,3.27e-21,64;UBERON:0003075,3.27e-21,64;UBERON:0007284,3.27e-21,64;UBERON:0002616,3.33e-21,46;UBERON:0002020,1.65e-20,34;UBERON:0003080,2.30e-19,40;UBERON:0002780,8.33e-19,39;UBERON:0001890,8.33e-19,39;UBERON:0006240,8.33e-19,39;UBERON:0010371,2.12e-18,73;UBERON:0004121,4.73e-18,95;UBERON:0000924,4.73e-18,95;UBERON:0006601,4.73e-18,95;UBERON:0003056,1.30e-17,49;UBERON:0003528,2.88e-17,29;UBERON:0002791,2.88e-17,29;UBERON:0001893,2.88e-17,29;UBERON:0010314,1.75e-13,92;UBERON:0000956,5.56e-12,21;UBERON:0001869,5.56e-12,21;UBERON:0000203,5.56e-12,21;UBERON:0002619,7.78e-10,17;UBERON:0002021,1.82e-09,10;UBERON:0000411,1.82e-09,10;UBERON:0001950,1.82e-09,10;UBERON:0000025,1.24e-07,114;UBERON:0004111,9.16e-07,122|phase1_expression=1.12104192973356,0,0,0.30246421130683,0,0.33575854382378,0.233612640595526,1.03298658753261,0.703943610758334,0.936258105287974,0.856089841127525,1.51567102091139,1.02720437958723,0.262261207256992,3.33109761815663,2.02475267389826,0.699561878128147,0.630924330716475,1.50825876966313,1.69755860719212,15.6479653877968,0.893618560807968,0.783599367416806,0.639969691173627,0.68822784320151,0,0.430761996159075,0.646413698057667,0.760093677825496,0.504060259519861,0.665191531965914,1.90509202037889,1.84519436275371,0,0.288851619751275,0.664938581433969,0.816677425049476,0,0.7813353445238,0.523523743973798,0.588231488031014,0,0,2.14024590558481,1.92616169317078,1.10128051297009,1.56478268869608,0.436050312760893,0.659058548203415,0.388859798148567,0.55994568650145,1.43752564364972,0.503347818173209,0,0.672187598284928,1.28629718017973,1.71920063963254,0.515672092277442,4.65327859977075,7.93486468908049,3.80298842103708,0.677689064138264,0.889294796111139,2.2497492932035,0.988866362566974,2.1314403448383,1.79760066311043,1.15265491596466,2.28117147078651,3.10513658162888,3.78584930432488,6.85562362569129,4.19650227808066,3.30725157880376,2.97120960156533,5.51531271966013,8.8092704799511,9.70423769447427,7.98753972932466,4.3522474950964,4.39140689291566,6.25096044668112,8.37548997004143,12.380777420697,7.33431589328689,4.41942878210502,4.9830088279686,5.96478226640962,1.51452386666368,0.831287161174641,0.579728977403356,0,0,0.539703191637817,0,0.448026887097336,1.40444420131752,1.36344258062446,1.55871602761721,2.12003744706204,1.12674735821344,0,2.54805239706646,0,2.59789249213457,3.80039798212648,3.0331466700887,2.51204535381932,0.517875767294343,0.890652834388949,1.21439728736295,0.913396434936424,0.461230994512117,1.20578112442098,0.940709657085638,1.38233250462643,0.741584903203122,0.433798070759735,0,0.808834249737046,0.883366073841574,0,0,5.85561594023094,2.72280718857492,0,1.43778149407104,0.599902730993408,2.287264087315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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=100038969,100503211,20042,434843,626048,665463,665522,665579,665611,670832 | |||
|HGNC= | |||
|MCL_coexpression_id=0 | |||
|TSSclassifier=NA | |||
|UniProt=Q6ZWZ6 | |||
|association_with_transcript=-6bp_to_ENSMUST00000073926,NM_011295,uc007epw.2,uc007epx.2_5end | |||
|cluster_id=chr10:23507021..23507058,- | |||
|description=CAGE_peak_2_at_Gm10279_5end,CAGE_peak_2_at_Gm14059_5end,CAGE_peak_2_at_Gm14958_5end,CAGE_peak_2_at_Gm5642_5end,CAGE_peak_2_at_Gm6646_5end,CAGE_peak_2_at_Gm7643_5end,CAGE_peak_2_at_Gm7671_5end,CAGE_peak_2_at_Gm7698_5end,CAGE_peak_2_at_Gm7711_5end,CAGE_peak_2_at_Rps12_5end | |||
|id=chr10:23507021..23507058,- | |||
|ontology_enrichment_celltype=CL:0000117!1.31e-12!23;CL:0000337!1.31e-12!23;CL:0000393!5.06e-07!39;CL:0000211!5.06e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,3.39e-15,23;CL:0000337,3.39e-15,23;CL:0000393,1.05e-08,39;CL:0000211,1.05e-08,39;CL:0000540,4.32e-08,33;CL:0000047,4.32e-08,33;CL:0000031,4.32e-08,33;CL:0000404,4.32e-08,33;CL:0000221,6.89e-07,44;CL:0000133,6.89e-07,44;CL:0002319,8.12e-07,43 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.63e-20!52;UBERON:0005068!2.63e-20!52;UBERON:0006241!2.63e-20!52;UBERON:0007135!2.63e-20!52;UBERON:0000955!1.57e-19!50;UBERON:0006238!1.57e-19!50;UBERON:0002616!5.75e-19!49;UBERON:0000073!3.32e-18!75;UBERON:0001016!3.32e-18!75;UBERON:0001017!3.34e-18!73;UBERON:0005743!3.34e-18!73;UBERON:0002020!9.28e-17!34;UBERON:0000033!5.29e-16!63;UBERON:0003080!8.13e-16!40;UBERON:0002346!9.22e-16!71;UBERON:0003075!9.22e-16!71;UBERON:0007284!9.22e-16!71;UBERON:0002780!2.30e-15!39;UBERON:0001890!2.30e-15!39;UBERON:0006240!2.30e-15!39;UBERON:0004121!3.81e-14!102;UBERON:0000924!3.81e-14!102;UBERON:0006601!3.81e-14!102;UBERON:0002791!3.87e-14!29;UBERON:0003528!3.87e-14!29;UBERON:0001893!3.87e-14!29;UBERON:0003056!6.33e-14!49;UBERON:0000956!7.29e-10!21;UBERON:0001869!7.29e-10!21;UBERON:0000203!7.29e-10!21;UBERON:0007811!5.42e-09!86;UBERON:0000153!1.58e-08!94;UBERON:0002619!4.00e-08!17;UBERON:0002021!5.79e-08!10;UBERON:0000411!5.79e-08!10;UBERON:0001950!5.79e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,6.18e-27,54;UBERON:0001049,3.75e-25,52;UBERON:0005068,3.75e-25,52;UBERON:0006241,3.75e-25,52;UBERON:0007135,3.75e-25,52;UBERON:0001017,5.91e-23,73;UBERON:0001016,1.44e-22,75;UBERON:0000955,6.91e-22,47;UBERON:0006238,6.91e-22,47;UBERON:0002346,3.27e-21,64;UBERON:0003075,3.27e-21,64;UBERON:0007284,3.27e-21,64;UBERON:0002616,3.33e-21,46;UBERON:0002020,1.65e-20,34;UBERON:0003080,2.30e-19,40;UBERON:0002780,8.33e-19,39;UBERON:0001890,8.33e-19,39;UBERON:0006240,8.33e-19,39;UBERON:0010371,2.12e-18,73;UBERON:0004121,4.73e-18,95;UBERON:0000924,4.73e-18,95;UBERON:0006601,4.73e-18,95;UBERON:0003056,1.30e-17,49;UBERON:0003528,2.88e-17,29;UBERON:0002791,2.88e-17,29;UBERON:0001893,2.88e-17,29;UBERON:0010314,1.75e-13,92;UBERON:0000956,5.56e-12,21;UBERON:0001869,5.56e-12,21;UBERON:0000203,5.56e-12,21;UBERON:0002619,7.78e-10,17;UBERON:0002021,1.82e-09,10;UBERON:0000411,1.82e-09,10;UBERON:0001950,1.82e-09,10;UBERON:0000025,1.24e-07,114;UBERON:0004111,9.16e-07,122 | |||
|phase1_expression=1.12104192973356,0,0,0.30246421130683,0,0.33575854382378,0.233612640595526,1.03298658753261,0.703943610758334,0.936258105287974,0.856089841127525,1.51567102091139,1.02720437958723,0.262261207256992,3.33109761815663,2.02475267389826,0.699561878128147,0.630924330716475,1.50825876966313,1.69755860719212,15.6479653877968,0.893618560807968,0.783599367416806,0.639969691173627,0.68822784320151,0,0.430761996159075,0.646413698057667,0.760093677825496,0.504060259519861,0.665191531965914,1.90509202037889,1.84519436275371,0,0.288851619751275,0.664938581433969,0.816677425049476,0,0.7813353445238,0.523523743973798,0.588231488031014,0,0,2.14024590558481,1.92616169317078,1.10128051297009,1.56478268869608,0.436050312760893,0.659058548203415,0.388859798148567,0.55994568650145,1.43752564364972,0.503347818173209,0,0.672187598284928,1.28629718017973,1.71920063963254,0.515672092277442,4.65327859977075,7.93486468908049,3.80298842103708,0.677689064138264,0.889294796111139,2.2497492932035,0.988866362566974,2.1314403448383,1.79760066311043,1.15265491596466,2.28117147078651,3.10513658162888,3.78584930432488,6.85562362569129,4.19650227808066,3.30725157880376,2.97120960156533,5.51531271966013,8.8092704799511,9.70423769447427,7.98753972932466,4.3522474950964,4.39140689291566,6.25096044668112,8.37548997004143,12.380777420697,7.33431589328689,4.41942878210502,4.9830088279686,5.96478226640962,1.51452386666368,0.831287161174641,0.579728977403356,0,0,0.539703191637817,0,0.448026887097336,1.40444420131752,1.36344258062446,1.55871602761721,2.12003744706204,1.12674735821344,0,2.54805239706646,0,2.59789249213457,3.80039798212648,3.0331466700887,2.51204535381932,0.517875767294343,0.890652834388949,1.21439728736295,0.913396434936424,0.461230994512117,1.20578112442098,0.940709657085638,1.38233250462643,0.741584903203122,0.433798070759735,0,0.808834249737046,0.883366073841574,0,0,5.85561594023094,2.72280718857492,0,1.43778149407104,0.599902730993408,2.28726408731516,3.74476598512057,8.6925114535539,4.14659361972453,11.1247564923057,11.2514801225345,8.51930982694196,6.65189178577806,1.32391173005411,0.622034853050465,4.29628689337247,0.420883711772948,0.390361328888111,0.459804208866946,1.0803727788321,1.80845781402858,1.08858398642125,1.5373646434182,1.87403449119458,1.03481348295606,1.5089759505299,0.945530400839096,0.703804496655795,0.43839146485515,1.39023624612799,0.696504333044333,1.85203922767149,0.995171334092466,2.1066395619397,1.02939162845886,1.98914449576915,0.828503090142008,0.703578179943289,1.2604344302271,0.710234206755631,0.787056926989615,0.462801338662135,0.232533944750408,1.60964040839772,0.817357396570186,1.31647879930784,0.492502392237286,0.56748166682099,0.438599962275997,0.219550115291051,0.671032093801859,9.2527577368216,3.49875682089567,0,0.528901133327089,1.49301775374664,1.39342003116263,0.77320476793256,0.403367049246685,0.22237804384487,1.52180500890047,0.474529061544512,0.329397909448022,0.251335208800269,0.795825888164603,0.38992817423824,0.898819408654221,0.864552199498777,0.199141273254367,2.0863469104839,1.37098215131675,0,1.01825663922657,0.775809948670503,0.911765658574141,0.379419222745544,0.442830443938806,0.31399745568275,0.246794327843601,0,0.667380422864376,0.982794975566015,0.899448449539415,0.405720242777006,0.72353147925725,1.52775511068852,0.575392274901621,0.486405680325106,0.274561413188081,1.43768206527355,0.372140947668503,0,0,0,0,1.10851914099963,1.13694847062291,1.14075483509418,1.18821560042632,1.40814148973101,0.167506257441816,0.714130922658041,0.585400943573396,0.788175720530955,0.8858587585951,0.956728611944923,0.983179888294428,0.690739927463582,0.578596234326046,4.52373851817817,1.63171705145613,0,0.827810238914197,5.29816946959713,4.68846746368813,1.3114795630134,0.504941854408746,0.631016438832513,0,0.646270193198397,0.716906393857656,0,0.283076530788832,0.809621403349789,0.876767573733936,0.395287777946524,5.78378369559253,0.283880170416537,0.890328018336276,1.30309567482861,0.164970122972535,0,0.971122544619926,1.81394134178851,1.13163047853539,0.590603785761546,0.922305443831782,0.516856586336442,1.45413491791002,0.356497378384721,0.948110273807448,0,1.03135543248187,4.08527526904546,0.540183282093931,1.03486947026204,1.07168517515796,1.06404140185364,1.78368817602071,1.64549020602121,3.04464949114599,0.469343416127421,0.847328283455281,0.441056796109924,1.15420377059036,0.807322133479528,0.603129249281559,1.3130957840345,0.820704498725306,0.874442509889552,3.33765543618917,0.170870880797853,0.82554747185289,1.11116716421827,1.69531611304222,0.27338845544205,0.686334519619568,0.849892149969277,0.979660166265606,1.65839968565309,0.954670618015114,1.10717597753397,0.609958401380546,0.86404272657441,0.836353184057875,0.218362563746178,0.269728692769641,0.826534557253359,1.04702376793612,0,0,104.283193656575,1.19613236835183,0.992750942742586,0.972255941720238,1.42075805825504,0.675824501963113,0.938857909166032,1.43224823328345,0.734015410979976,22.2257391159926,46.372831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| |||
|short_description=p2@Gm10279,p2@Gm14059,p2@Gm14958,p2@Gm5642,p2@Gm6646,p2@Gm7643,p2@Gm7671,p2@Gm7698,p2@Gm7711,p2@Rps12 | |||
}} |
Latest revision as of 21:50, 25 September 2015
Short description: | p2@Gm10279, p2@Gm14059, p2@Gm14958, p2@Gm5642, p2@Gm6646, p2@Gm7643, p2@Gm7671, p2@Gm7698, p2@Gm7711, p2@Rps12 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Gm10279_5end, CAGE_peak_2_at_Gm14059_5end, CAGE_peak_2_at_Gm14958_5end, CAGE_peak_2_at_Gm5642_5end, CAGE_peak_2_at_Gm6646_5end, CAGE_peak_2_at_Gm7643_5end, CAGE_peak_2_at_Gm7671_5end, CAGE_peak_2_at_Gm7698_5end, CAGE_peak_2_at_Gm7711_5end, CAGE_peak_2_at_Rps12_5end |
Coexpression cluster: | MCL_coexpression_mm9:0 |
Association with transcript: | -6bp_to_ENSMUST00000073926, NM_011295, uc007epw.2, uc007epx.2_5end |
EntrezGene: | 100038969,100503211,20042,434843,626048,665463,665522,665579,665611,670832 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 3.39e-15 | 23 |
neuroblast (sensu Vertebrata) | 3.39e-15 | 23 |
electrically responsive cell | 1.05e-08 | 39 |
electrically active cell | 1.05e-08 | 39 |
neuron | 4.32e-08 | 33 |
neuronal stem cell | 4.32e-08 | 33 |
neuroblast | 4.32e-08 | 33 |
electrically signaling cell | 4.32e-08 | 33 |
ectodermal cell | 6.89e-07 | 44 |
neurectodermal cell | 6.89e-07 | 44 |
neural cell | 8.12e-07 | 43 |