FFCP PHASE1:Mm9::chr19:4615647..4615700,-: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr19:4615647..4615700,-
|short_description=p2@Lrfn4
|description=CAGE_peak_2_at_Lrfn4_5end
|association_with_transcript=0bp_to_ENSMUST00000113822,NM_153388,uc0...") |
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{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=225875 | |EntrezGene=225875 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1267 | |||
|TSSclassifier=NA | |||
|UniProt=Q80XU8 | |UniProt=Q80XU8 | ||
|association_with_transcript=0bp_to_ENSMUST00000113822,NM_153388,uc008gai.2_5end | |||
|cluster_id=chr19:4615647..4615700,- | |||
|description=CAGE_peak_2_at_Lrfn4_5end | |||
|id=chr19:4615647..4615700,- | |||
|ontology_enrichment_celltype=CL:0000221!1.19e-09!44;CL:0000133!1.19e-09!44;CL:0002319!3.33e-09!43;CL:0000055!4.56e-08!50;CL:0000540!4.67e-08!33;CL:0000047!4.67e-08!33;CL:0000031!4.67e-08!33;CL:0000404!4.67e-08!33;CL:0000393!3.81e-07!39;CL:0000211!3.81e-07!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,1.31e-09,44;CL:0000133,1.31e-09,44;CL:0002319,3.76e-09,43;CL:0000540,6.14e-08,33;CL:0000047,6.14e-08,33;CL:0000031,6.14e-08,33;CL:0000404,6.14e-08,33;CL:0000393,3.54e-07,39;CL:0000211,3.54e-07,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!1.15e-13!73;UBERON:0005743!1.15e-13!73;UBERON:0000073!3.27e-13!75;UBERON:0001016!3.27e-13!75;UBERON:0004121!6.00e-12!102;UBERON:0000924!6.00e-12!102;UBERON:0006601!6.00e-12!102;UBERON:0002346!4.81e-10!71;UBERON:0003075!4.81e-10!71;UBERON:0007284!4.81e-10!71;UBERON:0001049!1.09e-08!52;UBERON:0005068!1.09e-08!52;UBERON:0006241!1.09e-08!52;UBERON:0007135!1.09e-08!52;UBERON:0003056!2.94e-08!49;UBERON:0000033!6.79e-08!63;UBERON:0002780!2.53e-07!39;UBERON:0001890!2.53e-07!39;UBERON:0006240!2.53e-07!39;UBERON:0003080!3.38e-07!40;UBERON:0000955!5.80e-07!50;UBERON:0006238!5.80e-07!50;UBERON:0002020!8.99e-07!34 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,2.45e-13,73;UBERON:0001016,6.86e-13,75;UBERON:0004121,5.98e-12,95;UBERON:0000924,5.98e-12,95;UBERON:0006601,5.98e-12,95;UBERON:0010314,3.33e-11,92;UBERON:0002346,1.53e-10,64;UBERON:0003075,1.53e-10,64;UBERON:0007284,1.53e-10,64;UBERON:0010371,1.91e-09,73;UBERON:0001049,1.82e-08,52;UBERON:0005068,1.82e-08,52;UBERON:0006241,1.82e-08,52;UBERON:0007135,1.82e-08,52;UBERON:0003056,3.72e-08,49;UBERON:0000073,1.20e-07,54;UBERON:0000955,1.77e-07,47;UBERON:0006238,1.77e-07,47;UBERON:0002780,3.17e-07,39;UBERON:0001890,3.17e-07,39;UBERON:0006240,3.17e-07,39;UBERON:0003080,4.21e-07,40;UBERON:0002616,5.41e-07,46 | |||
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| ||
|short_description=p2@Lrfn4 | |||
}} | }} |
Latest revision as of 20:56, 25 September 2015
Short description: | p2@Lrfn4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Lrfn4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1267 |
Association with transcript: | 0bp_to_ENSMUST00000113822, NM_153388, uc008gai.2_5end |
EntrezGene: | Lrfn4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 1.31e-09 | 44 |
neurectodermal cell | 1.31e-09 | 44 |
neural cell | 3.76e-09 | 43 |
neuron | 6.14e-08 | 33 |
neuronal stem cell | 6.14e-08 | 33 |
neuroblast | 6.14e-08 | 33 |
electrically signaling cell | 6.14e-08 | 33 |
electrically responsive cell | 3.54e-07 | 39 |
electrically active cell | 3.54e-07 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 2.45e-13 | 73 |
nervous system | 6.86e-13 | 75 |
ectoderm-derived structure | 5.98e-12 | 95 |
ectoderm | 5.98e-12 | 95 |
presumptive ectoderm | 5.98e-12 | 95 |
structure with developmental contribution from neural crest | 3.33e-11 | 92 |
neurectoderm | 1.53e-10 | 64 |
neural plate | 1.53e-10 | 64 |
presumptive neural plate | 1.53e-10 | 64 |
ecto-epithelium | 1.91e-09 | 73 |
neural tube | 1.82e-08 | 52 |
neural rod | 1.82e-08 | 52 |
future spinal cord | 1.82e-08 | 52 |
neural keel | 1.82e-08 | 52 |
pre-chordal neural plate | 3.72e-08 | 49 |
regional part of nervous system | 1.20e-07 | 54 |
brain | 1.77e-07 | 47 |
future brain | 1.77e-07 | 47 |
regional part of forebrain | 3.17e-07 | 39 |
forebrain | 3.17e-07 | 39 |
future forebrain | 3.17e-07 | 39 |
anterior neural tube | 4.21e-07 | 40 |
regional part of brain | 5.41e-07 | 46 |