FFCP PHASE1:Mm9::chr19:4615453..4615512,-: Difference between revisions
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{{FFCP|EntrezGene=225875|HGNC=|MCL_coexpression_id=1685|UniProt=Q80XU8|association_with_transcript=0bp_to_ENSMUST00000053597,uc008gah.2_5end|description=CAGE_peak_1_at_Lrfn4_5end|id=chr19:4615453..4615512,-|ontology_enrichment_celltype=CL:0000221!1.44e-19!44;CL:0000133!1.44e-19!44;CL:0002319!4.47e-19!43;CL:0000055!3.68e-17!50;CL:0000540!2.92e-13!33;CL:0000047!2.92e-13!33;CL:0000031!2.92e-13!33;CL:0000404!2.92e-13!33;CL:0000393!1.24e-12!39;CL:0000211!1.24e-12!39;CL:0002321!1.74e-12!70;CL:0000220!1.74e-12!70;CL:0000117!6.89e-09!23;CL:0000337!6.89e-09!23;CL:0000333!6.34e-07!10;CL:0000095!6.34e-07!10;CL:0000243!6.34e-07!10;CL:0000123!6.34e-07!10;CL:0000125!6.34e-07!10;CL:0000030!6.34e-07!10;CL:0000339!6.34e-07!10|ontology_enrichment_celltype_v019_2=CL:0000221,8.85e-20,44;CL:0000133,8.85e-20,44;CL:0002319,2.78e-19,43;CL:0000540,2.12e-13,33;CL:0000047,2.12e-13,33;CL:0000031,2.12e-13,33;CL:0000404,2.12e-13,33;CL:0002321,3.70e-13,70;CL:0000393,9.14e-13,39;CL:0000211,9.14e-13,39;CL:0000117,5.65e-09,23;CL:0000337,5.65e-09,23;CL:0000333,5.48e-07,10;CL:0000095,5.48e-07,10;CL:0000243,5.48e-07,10;CL:0000123,5.48e-07,10;CL:0000125,5.48e-07,10;CL:0000030,5.48e-07,10;CL:0000339,5.48e-07,10|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000073!6.94e-21!75;UBERON:0001016!6.94e-21!75;UBERON:0001017!8.63e-20!73;UBERON:0005743!8.63e-20!73;UBERON:0004121!2.06e-17!102;UBERON:0000924!2.06e-17!102;UBERON:0006601!2.06e-17!102;UBERON:0001049!1.17e-11!52;UBERON:0005068!1.17e-11!52;UBERON:0006241!1.17e-11!52;UBERON:0007135!1.17e-11!52;UBERON:0002346!1.86e-11!71;UBERON:0003075!1.86e-11!71;UBERON:0007284!1.86e-11!71;UBERON:0003056!8.32e-11!49;UBERON:0000033!8.34e-11!63;UBERON:0002780!1.57e-10!39;UBERON:0001890!1.57e-10!39;UBERON:0006240!1.57e-10!39;UBERON:0002020!1.66e-10!34;UBERON:0003080!2.92e-10!40;UBERON:0002616!8.23e-10!49;UBERON:0000955!1.60e-09!50;UBERON:0006238!1.60e-09!50;UBERON:0002791!2.49e-08!29;UBERON:0003528!2.49e-08!29;UBERON:0001893!2.49e-08!29|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.10e-21,75;UBERON:0001017,5.26e-20,73;UBERON:0004121,9.06e-20,95;UBERON:0000924,9.06e-20,95;UBERON:0006601,9.06e-20,95;UBERON:0002346,8.46e-14,64;UBERON:0003075,8.46e-14,64;UBERON:0007284,8.46e-14,64;UBERON:0010371,1.14e-12,73;UBERON:0000073,4.65e-12,54;UBERON:0001049,8.87e-12,52;UBERON:0005068,8.87e-12,52;UBERON:0006241,8.87e-12,52;UBERON:0007135,8.87e-12,52;UBERON:0003056,6.47e-11,49;UBERON:0002780,1.23e-10,39;UBERON:0001890,1.23e-10,39;UBERON:0006240,1.23e-10,39;UBERON:0002020,1.30e-10,34;UBERON:0010314,1.61e-10,92;UBERON:0003080,2.31e-10,40;UBERON:0002616,4.31e-10,46;UBERON:0000955,8.85e-10,47;UBERON:0006238,8.85e-10,47;UBERON:0003528,2.07e-08,29;UBERON:0002791,2.07e-08,29;UBERON:0001893,2.07e-08,29;UBERON:0000956,8.91e-07,21;UBERON:0001869,8.91e-07,21;UBERON:0000203,8.91e-07,21|phase1_expression=7.68714466103011,0,0.909998478779072,0,0,3.18970616632591,3.03696432774183,0,0.84473233291,1.17032263160997,0,0.239316476986009,0,0,0,0,0.699561878128147,0.157731082679119,0.137114433605739,0,1.19060606211498,2.78014663362479,2.08959831311148,1.43993180514066,0,0.57423196411502,1.29228598847722,1.29282739611533,0.760093677825496,1.00812051903972,3.10422714917427,1.27006134691926,3.69038872550742,0,3.17736781726402,2.99222361645286,2.85837098767317,0,0.7813353445238,0,0,0,0,5.03587271902309,4.96746962975621,6.05704282133549,6.25913075478431,53.198138156829,16.4764637050854,8.74934545834275,12.0388322597812,20.125359011096,0,0,0.336093799142464,3.8588915405392,3.43840127926508,1.54701627683233,11.9366711907163,15.869729378161,9.50747105259269,5.08266798103698,4.4464739805557,0.449949858640699,0,2.8419204597844,14.9800055259202,30.3532461204028,11.9243054154749,15.255671031481,13.6711224878398,9.14083150092171,9.05561017901615,14.8213867050094,12.3640657613525,18.3843757322004,6.60695285996332,2.80912143787413,3.07213066512487,8.17694983927202,8.41686321142169,7.29278718779464,2.51264699101243,4.50210088025344,6.1119299110724,11.490514833473,7.54569908235246,9.69277118291563,10.2230360999798,9.44644501334819,1.44932244350839,0,0,0,0,0,0.702222100658759,16.1908806449155,11.6903702071291,15.1936017039446,8.87313544593087,7.69958864485907,7.64415719119937,14.2213340630666,10.1750789275271,9.37431502257865,8.08839112023653,0.5709193985953,0,1.63286352971307,3.99016251562112,3.65358573974569,1.38369298353635,1.05505848386836,1.64624189989987,0.879666139307728,2.96633961281249,0.289198713839823,0,2.42650274921114,1.10420759230197,2.42437626567611,9.31958806090611,1.75668478206928,5.65506108396329,1.27728527604296,1.43778149407104,1.79970819298022,1.52484272487678,2.99581278809645,5.49000723382352,14.4502504929794,3.99795936442236,4.60287823194595,3.53239675751252,5.67844420737152,4.68461073711455,0.995255764880744,1.76905930903572,1.26265113531884,4.94457683258274,8.04657365517155,5.04173963454978,4.21973489940002,8.23241639731067,6.66191345481219,6.8402258928602,1.29351685369508,8.838287710246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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=225875 | |||
|HGNC= | |||
|MCL_coexpression_id=1685 | |||
|TSSclassifier=NA | |||
|UniProt=Q80XU8 | |||
|association_with_transcript=0bp_to_ENSMUST00000053597,uc008gah.2_5end | |||
|cluster_id=chr19:4615453..4615512,- | |||
|description=CAGE_peak_1_at_Lrfn4_5end | |||
|id=chr19:4615453..4615512,- | |||
|ontology_enrichment_celltype=CL:0000221!1.44e-19!44;CL:0000133!1.44e-19!44;CL:0002319!4.47e-19!43;CL:0000055!3.68e-17!50;CL:0000540!2.92e-13!33;CL:0000047!2.92e-13!33;CL:0000031!2.92e-13!33;CL:0000404!2.92e-13!33;CL:0000393!1.24e-12!39;CL:0000211!1.24e-12!39;CL:0002321!1.74e-12!70;CL:0000220!1.74e-12!70;CL:0000117!6.89e-09!23;CL:0000337!6.89e-09!23;CL:0000333!6.34e-07!10;CL:0000095!6.34e-07!10;CL:0000243!6.34e-07!10;CL:0000123!6.34e-07!10;CL:0000125!6.34e-07!10;CL:0000030!6.34e-07!10;CL:0000339!6.34e-07!10 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,8.85e-20,44;CL:0000133,8.85e-20,44;CL:0002319,2.78e-19,43;CL:0000540,2.12e-13,33;CL:0000047,2.12e-13,33;CL:0000031,2.12e-13,33;CL:0000404,2.12e-13,33;CL:0002321,3.70e-13,70;CL:0000393,9.14e-13,39;CL:0000211,9.14e-13,39;CL:0000117,5.65e-09,23;CL:0000337,5.65e-09,23;CL:0000333,5.48e-07,10;CL:0000095,5.48e-07,10;CL:0000243,5.48e-07,10;CL:0000123,5.48e-07,10;CL:0000125,5.48e-07,10;CL:0000030,5.48e-07,10;CL:0000339,5.48e-07,10 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000073!6.94e-21!75;UBERON:0001016!6.94e-21!75;UBERON:0001017!8.63e-20!73;UBERON:0005743!8.63e-20!73;UBERON:0004121!2.06e-17!102;UBERON:0000924!2.06e-17!102;UBERON:0006601!2.06e-17!102;UBERON:0001049!1.17e-11!52;UBERON:0005068!1.17e-11!52;UBERON:0006241!1.17e-11!52;UBERON:0007135!1.17e-11!52;UBERON:0002346!1.86e-11!71;UBERON:0003075!1.86e-11!71;UBERON:0007284!1.86e-11!71;UBERON:0003056!8.32e-11!49;UBERON:0000033!8.34e-11!63;UBERON:0002780!1.57e-10!39;UBERON:0001890!1.57e-10!39;UBERON:0006240!1.57e-10!39;UBERON:0002020!1.66e-10!34;UBERON:0003080!2.92e-10!40;UBERON:0002616!8.23e-10!49;UBERON:0000955!1.60e-09!50;UBERON:0006238!1.60e-09!50;UBERON:0002791!2.49e-08!29;UBERON:0003528!2.49e-08!29;UBERON:0001893!2.49e-08!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001016,4.10e-21,75;UBERON:0001017,5.26e-20,73;UBERON:0004121,9.06e-20,95;UBERON:0000924,9.06e-20,95;UBERON:0006601,9.06e-20,95;UBERON:0002346,8.46e-14,64;UBERON:0003075,8.46e-14,64;UBERON:0007284,8.46e-14,64;UBERON:0010371,1.14e-12,73;UBERON:0000073,4.65e-12,54;UBERON:0001049,8.87e-12,52;UBERON:0005068,8.87e-12,52;UBERON:0006241,8.87e-12,52;UBERON:0007135,8.87e-12,52;UBERON:0003056,6.47e-11,49;UBERON:0002780,1.23e-10,39;UBERON:0001890,1.23e-10,39;UBERON:0006240,1.23e-10,39;UBERON:0002020,1.30e-10,34;UBERON:0010314,1.61e-10,92;UBERON:0003080,2.31e-10,40;UBERON:0002616,4.31e-10,46;UBERON:0000955,8.85e-10,47;UBERON:0006238,8.85e-10,47;UBERON:0003528,2.07e-08,29;UBERON:0002791,2.07e-08,29;UBERON:0001893,2.07e-08,29;UBERON:0000956,8.91e-07,21;UBERON:0001869,8.91e-07,21;UBERON:0000203,8.91e-07,21 | |||
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| |||
|short_description=p1@Lrfn4 | |||
}} |
Latest revision as of 20:55, 25 September 2015
Short description: | p1@Lrfn4 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lrfn4_5end |
Coexpression cluster: | MCL_coexpression_mm9:1685 |
Association with transcript: | 0bp_to_ENSMUST00000053597, uc008gah.2_5end |
EntrezGene: | Lrfn4 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 8.85e-20 | 44 |
neurectodermal cell | 8.85e-20 | 44 |
neural cell | 2.78e-19 | 43 |
neuron | 2.12e-13 | 33 |
neuronal stem cell | 2.12e-13 | 33 |
neuroblast | 2.12e-13 | 33 |
electrically signaling cell | 2.12e-13 | 33 |
embryonic cell | 3.70e-13 | 70 |
electrically responsive cell | 9.14e-13 | 39 |
electrically active cell | 9.14e-13 | 39 |
CNS neuron (sensu Vertebrata) | 5.65e-09 | 23 |
neuroblast (sensu Vertebrata) | 5.65e-09 | 23 |
migratory neural crest cell | 5.48e-07 | 10 |
neuron associated cell | 5.48e-07 | 10 |
glial cell (sensu Vertebrata) | 5.48e-07 | 10 |
neuron associated cell (sensu Vertebrata) | 5.48e-07 | 10 |
glial cell | 5.48e-07 | 10 |
glioblast | 5.48e-07 | 10 |
glioblast (sensu Vertebrata) | 5.48e-07 | 10 |
Ontology term | p-value | n |
---|---|---|
nervous system | 4.10e-21 | 75 |
central nervous system | 5.26e-20 | 73 |
ectoderm-derived structure | 9.06e-20 | 95 |
ectoderm | 9.06e-20 | 95 |
presumptive ectoderm | 9.06e-20 | 95 |
neurectoderm | 8.46e-14 | 64 |
neural plate | 8.46e-14 | 64 |
presumptive neural plate | 8.46e-14 | 64 |
ecto-epithelium | 1.14e-12 | 73 |
regional part of nervous system | 4.65e-12 | 54 |
neural tube | 8.87e-12 | 52 |
neural rod | 8.87e-12 | 52 |
future spinal cord | 8.87e-12 | 52 |
neural keel | 8.87e-12 | 52 |
pre-chordal neural plate | 6.47e-11 | 49 |
regional part of forebrain | 1.23e-10 | 39 |
forebrain | 1.23e-10 | 39 |
future forebrain | 1.23e-10 | 39 |
gray matter | 1.30e-10 | 34 |
structure with developmental contribution from neural crest | 1.61e-10 | 92 |
anterior neural tube | 2.31e-10 | 40 |
regional part of brain | 4.31e-10 | 46 |
brain | 8.85e-10 | 47 |
future brain | 8.85e-10 | 47 |
brain grey matter | 2.07e-08 | 29 |
regional part of telencephalon | 2.07e-08 | 29 |
telencephalon | 2.07e-08 | 29 |
cerebral cortex | 8.91e-07 | 21 |
cerebral hemisphere | 8.91e-07 | 21 |
pallium | 8.91e-07 | 21 |