FFCP PHASE1:Mm9::chr7:133520915..133520952,-: Difference between revisions
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{{FFCP|EntrezGene=73658|HGNC=|UniProt=D3YWA9,D3YTR6,D6REG2|association_with_transcript=0bp_to_ENSMUST00000119754,ENSMUST00000119846,ENSMUST00000126810,ENSMUST00000138141_5end|description=CAGE_peak_1_at_Spns1_5end|id=chr7:133520915..133520952,-|ontology_enrichment_celltype=CL:0000221!5.43e-10!44;CL:0000133!5.43e-10!44;CL:0002319!1.62e-09!43;CL:0000055!3.53e-09!50;CL:0000540!2.23e-08!33;CL:0000047!2.23e-08!33;CL:0000031!2.23e-08!33;CL:0000404!2.23e-08!33;CL:0000393!3.41e-08!39;CL:0000211!3.41e-08!39;CL:0002321!7.63e-08!70;CL:0000220!7.63e-08!70;CL:0000117!1.66e-07!23;CL:0000337!1.66e-07!23|ontology_enrichment_celltype_v019_2=CL:0000221,5.43e-10,44;CL:0000133,5.43e-10,44;CL:0002319,1.62e-09,43;CL:0000540,2.23e-08,33;CL:0000047,2.23e-08,33;CL:0000031,2.23e-08,33;CL:0000404,2.23e-08,33;CL:0000393,3.41e-08,39;CL:0000211,3.41e-08,39;CL:0002321,7.63e-08,70;CL:0000117,1.66e-07,23;CL:0000337,1.66e-07,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001017!4.95e-19!73;UBERON:0005743!4.95e-19!73;UBERON:0000073!1.92e-18!75;UBERON:0001016!1.92e-18!75;UBERON:0004121!1.45e-16!102;UBERON:0000924!1.45e-16!102;UBERON:0006601!1.45e-16!102;UBERON:0001049!1.41e-13!52;UBERON:0005068!1.41e-13!52;UBERON:0006241!1.41e-13!52;UBERON:0007135!1.41e-13!52;UBERON:0000033!4.52e-13!63;UBERON:0002346!6.13e-13!71;UBERON:0003075!6.13e-13!71;UBERON:0007284!6.13e-13!71;UBERON:0000955!6.79e-12!50;UBERON:0006238!6.79e-12!50;UBERON:0002616!1.26e-11!49;UBERON:0003056!1.37e-09!49;UBERON:0002020!4.97e-09!34;UBERON:0003080!1.38e-08!40;UBERON:0000480!3.82e-08!308;UBERON:0000467!3.82e-08!308;UBERON:0002780!3.93e-08!39;UBERON:0001890!3.93e-08!39;UBERON:0006240!3.93e-08!39;UBERON:0000923!4.43e-08!314;UBERON:0005291!4.43e-08!314;UBERON:0006598!4.43e-08!314;UBERON:0002532!4.43e-08!314;UBERON:0007811!5.44e-08!86;UBERON:0000153!1.73e-07!94;UBERON:0002050!4.10e-07!317;UBERON:0005423!4.10e-07!317;UBERON:0002791!9.99e-07!29;UBERON:0003528!9.99e-07!29;UBERON:0001893!9.99e-07!29|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.95e-19,73;UBERON:0001016,1.92e-18,75;UBERON:0004121,1.74e-17,95;UBERON:0000924,1.74e-17,95;UBERON:0006601,1.74e-17,95;UBERON:0000073,3.88e-14,54;UBERON:0002346,4.11e-14,64;UBERON:0003075,4.11e-14,64;UBERON:0007284,4.11e-14,64;UBERON:0001049,1.41e-13,52;UBERON:0005068,1.41e-13,52;UBERON:0006241,1.41e-13,52;UBERON:0007135,1.41e-13,52;UBERON:0010371,1.24e-12,73;UBERON:0000955,5.85e-11,47;UBERON:0006238,5.85e-11,47;UBERON:0002616,1.07e-10,46;UBERON:0010314,1.76e-10,92;UBERON:0003056,1.37e-09,49;UBERON:0011216,4.76e-09,194;UBERON:0002020,4.97e-09,34;UBERON:0003080,1.38e-08,40;UBERON:0002780,3.93e-08,39;UBERON:0001890,3.93e-08,39;UBERON:0006240,3.93e-08,39;UBERON:0005423,1.76e-07,304;UBERON:0003528,9.99e-07,29;UBERON:0002791,9.99e-07,29;UBERON:0001893,9.99e-07,29|phase1_expression=41.3184025530368,64.9094258209212,49.1399178540699,70.7766254457982,72.128985112274,35.7582849172325,25.2301651843168,34.9924206526672,8.30653460694834,7.49006484230379,7.53359060192222,12.0455960082958,38.1777627746589,39.2517606861298,8.99396356902289,8.90891176515234,11.1929900500503,16.0885704332701,17.9619908023518,16.1268067683251,23.8971645324506,16.5815888505478,14.8883879809193,31.6784997130945,33.2643457547397,45.3643251650866,35.7532456812032,36.845580789287,60.6174708065833,43.3491823187081,49.0024428548223,43.1820857952549,45.5147942812582,31.6963362030877,21.6638714813456,17.1221684719247,19.8044275574498,13.811543814318,12.5013655123808,14.6586648312664,11.7646297606203,16.3930916390027,16.9928623560904,24.2980858692864,27.1690175668299,25.8800920547971,46.1610893165343,31.1775973624039,28.5592037554813,30.9143539528111,27.7173114818218,37.3756667348926,19.7983475148129,34.8173828165445,30.5845357219642,37.0453587891764,42.406949110936,29.9089813520917,40.4632921719196,47.609188134483,45.0020296489387,43.710944636918,37.3503814366679,75.5915762516375,91.9645717187286,76.7318524141788,54.2276200038313,61.4749288514487,26.3371615263533,33.0764548912642,27.552569937031,49.1319693174542,53.2293183693389,27.0704666265048,27.3159592401974,35.8495326777908,56.1590993096882,31.7941471832117,36.7119614482422,44.1819063896149,38.5162979566145,41.152156273984,44.9484628392223,41.0816705323126,42.7835093775068,54.5062883126285,44.5623360901192,39.1438836233131,31.4263702332714,21.2356083900067,19.1310562543107,25.8127163094416,50.9978500280813,44.255661714301,37.0372557945171,23.2973981290615,23.0328849016073,22.3263722577256,22.6013824004496,20.8470348961101,47.0417022054113,16.6824420638613,15.2883143823987,7.11066703153331,26.8448890853906,23.055747758234,23.7596489156948,22.836775943812,24.3401610628341,21.8209944425292,27.7576522825817,35.9269264408327,26.7513976817028,25.6228488939458,28.1037010054335,25.8873178139131,41.0343646439061,18.074919614989,19.4614321428972,20.7061567932684,14.575540218386,21.3345111379498,27.9587641827183,46.552146724836,62.2056719235962,36.0194447844114,14.2579998162045,8.9985409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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=73658 | |||
|HGNC= | |||
|TSSclassifier=NA | |||
|UniProt=D3YWA9,D3YTR6,D6REG2 | |||
|association_with_transcript=0bp_to_ENSMUST00000119754,ENSMUST00000119846,ENSMUST00000126810,ENSMUST00000138141_5end | |||
|cluster_id=chr7:133520915..133520952,- | |||
|description=CAGE_peak_1_at_Spns1_5end | |||
|id=chr7:133520915..133520952,- | |||
|ontology_enrichment_celltype=CL:0000221!5.43e-10!44;CL:0000133!5.43e-10!44;CL:0002319!1.62e-09!43;CL:0000055!3.53e-09!50;CL:0000540!2.23e-08!33;CL:0000047!2.23e-08!33;CL:0000031!2.23e-08!33;CL:0000404!2.23e-08!33;CL:0000393!3.41e-08!39;CL:0000211!3.41e-08!39;CL:0002321!7.63e-08!70;CL:0000220!7.63e-08!70;CL:0000117!1.66e-07!23;CL:0000337!1.66e-07!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000221,5.43e-10,44;CL:0000133,5.43e-10,44;CL:0002319,1.62e-09,43;CL:0000540,2.23e-08,33;CL:0000047,2.23e-08,33;CL:0000031,2.23e-08,33;CL:0000404,2.23e-08,33;CL:0000393,3.41e-08,39;CL:0000211,3.41e-08,39;CL:0002321,7.63e-08,70;CL:0000117,1.66e-07,23;CL:0000337,1.66e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001017!4.95e-19!73;UBERON:0005743!4.95e-19!73;UBERON:0000073!1.92e-18!75;UBERON:0001016!1.92e-18!75;UBERON:0004121!1.45e-16!102;UBERON:0000924!1.45e-16!102;UBERON:0006601!1.45e-16!102;UBERON:0001049!1.41e-13!52;UBERON:0005068!1.41e-13!52;UBERON:0006241!1.41e-13!52;UBERON:0007135!1.41e-13!52;UBERON:0000033!4.52e-13!63;UBERON:0002346!6.13e-13!71;UBERON:0003075!6.13e-13!71;UBERON:0007284!6.13e-13!71;UBERON:0000955!6.79e-12!50;UBERON:0006238!6.79e-12!50;UBERON:0002616!1.26e-11!49;UBERON:0003056!1.37e-09!49;UBERON:0002020!4.97e-09!34;UBERON:0003080!1.38e-08!40;UBERON:0000480!3.82e-08!308;UBERON:0000467!3.82e-08!308;UBERON:0002780!3.93e-08!39;UBERON:0001890!3.93e-08!39;UBERON:0006240!3.93e-08!39;UBERON:0000923!4.43e-08!314;UBERON:0005291!4.43e-08!314;UBERON:0006598!4.43e-08!314;UBERON:0002532!4.43e-08!314;UBERON:0007811!5.44e-08!86;UBERON:0000153!1.73e-07!94;UBERON:0002050!4.10e-07!317;UBERON:0005423!4.10e-07!317;UBERON:0002791!9.99e-07!29;UBERON:0003528!9.99e-07!29;UBERON:0001893!9.99e-07!29 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,4.95e-19,73;UBERON:0001016,1.92e-18,75;UBERON:0004121,1.74e-17,95;UBERON:0000924,1.74e-17,95;UBERON:0006601,1.74e-17,95;UBERON:0000073,3.88e-14,54;UBERON:0002346,4.11e-14,64;UBERON:0003075,4.11e-14,64;UBERON:0007284,4.11e-14,64;UBERON:0001049,1.41e-13,52;UBERON:0005068,1.41e-13,52;UBERON:0006241,1.41e-13,52;UBERON:0007135,1.41e-13,52;UBERON:0010371,1.24e-12,73;UBERON:0000955,5.85e-11,47;UBERON:0006238,5.85e-11,47;UBERON:0002616,1.07e-10,46;UBERON:0010314,1.76e-10,92;UBERON:0003056,1.37e-09,49;UBERON:0011216,4.76e-09,194;UBERON:0002020,4.97e-09,34;UBERON:0003080,1.38e-08,40;UBERON:0002780,3.93e-08,39;UBERON:0001890,3.93e-08,39;UBERON:0006240,3.93e-08,39;UBERON:0005423,1.76e-07,304;UBERON:0003528,9.99e-07,29;UBERON:0002791,9.99e-07,29;UBERON:0001893,9.99e-07,29 | |||
|phase1_expression=41.3184025530368,64.9094258209212,49.1399178540699,70.7766254457982,72.128985112274,35.7582849172325,25.2301651843168,34.9924206526672,8.30653460694834,7.49006484230379,7.53359060192222,12.0455960082958,38.1777627746589,39.2517606861298,8.99396356902289,8.90891176515234,11.1929900500503,16.0885704332701,17.9619908023518,16.1268067683251,23.8971645324506,16.5815888505478,14.8883879809193,31.6784997130945,33.2643457547397,45.3643251650866,35.7532456812032,36.845580789287,60.6174708065833,43.3491823187081,49.0024428548223,43.1820857952549,45.5147942812582,31.6963362030877,21.6638714813456,17.1221684719247,19.8044275574498,13.811543814318,12.5013655123808,14.6586648312664,11.7646297606203,16.3930916390027,16.9928623560904,24.2980858692864,27.1690175668299,25.8800920547971,46.1610893165343,31.1775973624039,28.5592037554813,30.9143539528111,27.7173114818218,37.3756667348926,19.7983475148129,34.8173828165445,30.5845357219642,37.0453587891764,42.406949110936,29.9089813520917,40.4632921719196,47.609188134483,45.0020296489387,43.710944636918,37.3503814366679,75.5915762516375,91.9645717187286,76.7318524141788,54.2276200038313,61.4749288514487,26.3371615263533,33.0764548912642,27.552569937031,49.1319693174542,53.2293183693389,27.0704666265048,27.3159592401974,35.8495326777908,56.1590993096882,31.7941471832117,36.7119614482422,44.1819063896149,38.5162979566145,41.152156273984,44.9484628392223,41.0816705323126,42.7835093775068,54.5062883126285,44.5623360901192,39.1438836233131,31.4263702332714,21.2356083900067,19.1310562543107,25.8127163094416,50.9978500280813,44.255661714301,37.0372557945171,23.2973981290615,23.0328849016073,22.3263722577256,22.6013824004496,20.8470348961101,47.0417022054113,16.6824420638613,15.2883143823987,7.11066703153331,26.8448890853906,23.055747758234,23.7596489156948,22.836775943812,24.3401610628341,21.8209944425292,27.7576522825817,35.9269264408327,26.7513976817028,25.6228488939458,28.1037010054335,25.8873178139131,41.0343646439061,18.074919614989,19.4614321428972,20.7061567932684,14.575540218386,21.3345111379498,27.9587641827183,46.552146724836,62.2056719235962,36.0194447844114,14.2579998162045,8.99854096490112,19.3146745151058,46.7346794943047,48.952564501593,34.9319098873763,40.3272422846081,48.3302214354325,39.2719404217569,42.182728397617,29.3297367888911,23.0152895628672,21.2287117084287,92.1735328782756,28.7566178947575,36.7843367093557,27.7295679900238,29.2367346601287,28.1671106486497,27.0319949801033,32.7956035959051,51.4819707770641,27.8082710883366,29.8787606665154,27.8002776179039,32.8793598641362,27.8047249225598,25.7706603226403,21.812906459242,35.6271337605103,18.9597560574573,12.8673953557358,17.6181369625267,27.9619792922928,27.2050229578072,21.6074473753218,23.2009840873506,25.9728785906573,23.4486011588815,21.3931229170375,28.7052539497593,25.8051406631445,24.5194176371086,21.0134354021242,22.3749914346562,28.5089975479398,25.4678133737619,28.4517607771988,38.9036404843635,28.2987684043032,44.6065357028127,23.5361004330554,24.5281488115519,32.9776074041823,26.0312271870629,31.4626298412414,42.4742063743702,52.8827240592914,31.7934471234823,49.0802885077552,51.5237178040552,38.7965120480244,43.2820273404447,34.1551375288604,31.123879181956,32.8583100869706,33.5712184686955,26.3914064128474,22.5415471346161,27.900231914808,32.1961128698259,33.03397116834,31.1756128022588,32.9170629994513,43.0176514285367,50.4694400440164,29.0523574545406,15.8502850430289,18.0834275504147,14.8408994174003,15.8230894683032,19.7765270996982,25.9718368817048,25.0295639582205,30.1571521801566,21.9649130550465,27.3159592401974,37.2140947668503,27.7713529071959,29.299149841865,21.8864844496733,42.4550298799763,32.3318082791558,28.6132031773432,23.4669566076517,22.9155865796504,22.2955735874077,25.7959636460396,29.7554551107517,34.928922966546,22.8570958953977,23.0323277234726,26.7884011344578,35.8860659227466,29.3564469172022,40.9356835785678,45.2373851817817,26.6513785071168,25.0799779239708,19.0396354950265,35.8027815672776,39.9691851279413,9.67216177722385,30.5489821917291,26.5026904309656,29.2829058222479,26.0662311256687,35.6063508949303,38.0985732680894,31.4214949175604,34.8137203440409,40.331308391761,32.8088855695615,36.3093087556642,30.0912980641529,34.188595904113,28.830991805583,35.9634868080127,30.5313818181915,29.8620182470627,25.3951787850391,24.141450208755,25.986566573508,23.3650712437385,31.2698234733548,22.5390912276053,17.8248689192361,22.7546465713787,26.3546521437497,29.9093075419742,26.2138496430417,29.3499583271036,47.4746369482709,35.7942848502759,29.793159251902,31.0361742627603,32.7452550998221,34.7090041990643,20.1817668934791,22.6660315824288,17.8628002424519,26.0520279647538,23.7352707242981,18.3351291781594,26.6200327126994,30.6943482523265,36.4351045787313,41.3498423483437,19.1375386493595,25.1791978915131,17.2230910453832,13.9392658183471,16.6766957819651,18.3022538565218,15.6380155594347,14.8348539463077,18.3805965159884,21.9574242143476,27.204895447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| |||
|short_description=p1@Spns1 | |||
}} |
Latest revision as of 20:50, 25 September 2015
Short description: | p1@Spns1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Spns1_5end |
Coexpression cluster: | NA |
Association with transcript: | 0bp_to_ENSMUST00000119754, ENSMUST00000119846, ENSMUST00000126810, ENSMUST00000138141_5end |
EntrezGene: | Spns1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
ectodermal cell | 5.43e-10 | 44 |
neurectodermal cell | 5.43e-10 | 44 |
neural cell | 1.62e-09 | 43 |
neuron | 2.23e-08 | 33 |
neuronal stem cell | 2.23e-08 | 33 |
neuroblast | 2.23e-08 | 33 |
electrically signaling cell | 2.23e-08 | 33 |
electrically responsive cell | 3.41e-08 | 39 |
electrically active cell | 3.41e-08 | 39 |
embryonic cell | 7.63e-08 | 70 |
CNS neuron (sensu Vertebrata) | 1.66e-07 | 23 |
neuroblast (sensu Vertebrata) | 1.66e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 4.95e-19 | 73 |
nervous system | 1.92e-18 | 75 |
ectoderm-derived structure | 1.74e-17 | 95 |
ectoderm | 1.74e-17 | 95 |
presumptive ectoderm | 1.74e-17 | 95 |
regional part of nervous system | 3.88e-14 | 54 |
neurectoderm | 4.11e-14 | 64 |
neural plate | 4.11e-14 | 64 |
presumptive neural plate | 4.11e-14 | 64 |
neural tube | 1.41e-13 | 52 |
neural rod | 1.41e-13 | 52 |
future spinal cord | 1.41e-13 | 52 |
neural keel | 1.41e-13 | 52 |
ecto-epithelium | 1.24e-12 | 73 |
brain | 5.85e-11 | 47 |
future brain | 5.85e-11 | 47 |
regional part of brain | 1.07e-10 | 46 |
structure with developmental contribution from neural crest | 1.76e-10 | 92 |
pre-chordal neural plate | 1.37e-09 | 49 |
organ system subdivision | 4.76e-09 | 194 |
gray matter | 4.97e-09 | 34 |
anterior neural tube | 1.38e-08 | 40 |
regional part of forebrain | 3.93e-08 | 39 |
forebrain | 3.93e-08 | 39 |
future forebrain | 3.93e-08 | 39 |
developing anatomical structure | 1.76e-07 | 304 |
brain grey matter | 9.99e-07 | 29 |
regional part of telencephalon | 9.99e-07 | 29 |
telencephalon | 9.99e-07 | 29 |