FFCP PHASE1:Mm9::chr5:23122346..23122415,-: Difference between revisions
From FANTOM5_SSTAR
m (moved FFCP PHASE1 mm9::chr5:23122346..23122415,- to FFCP PHASE1:Mm9::chr5:23122346..23122415,-: NSchange) |
No edit summary |
||
(7 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=20817 | |EntrezGene=20817 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=3362 | |||
|TSSclassifier=NA | |||
|UniProt=O54781,Q8CBI1,Q3TEK9 | |UniProt=O54781,Q8CBI1,Q3TEK9 | ||
|association_with_transcript=0bp_to_ENSMUST00000088392,NM_009274,uc008wqe.1,uc008wqg.1_5end | |||
|cluster_id=chr5:23122346..23122415,- | |||
|description=CAGE_peak_1_at_Srpk2_5end | |||
|id=chr5:23122346..23122415,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000153!5.67e-12!94;UBERON:0007811!7.86e-12!86;UBERON:0000033!2.96e-10!63;UBERON:0000955!1.35e-09!50;UBERON:0006238!1.35e-09!50;UBERON:0002616!4.17e-09!49;UBERON:0003056!6.95e-09!49;UBERON:0002346!4.89e-08!71;UBERON:0003075!4.89e-08!71;UBERON:0007284!4.89e-08!71;UBERON:0002021!9.44e-08!10;UBERON:0000411!9.44e-08!10;UBERON:0001950!9.44e-08!10;UBERON:0001049!1.73e-07!52;UBERON:0005068!1.73e-07!52;UBERON:0006241!1.73e-07!52;UBERON:0007135!1.73e-07!52;UBERON:0003080!1.79e-07!40;UBERON:0004121!2.60e-07!102;UBERON:0000924!2.60e-07!102;UBERON:0006601!2.60e-07!102;UBERON:0002780!4.87e-07!39;UBERON:0001890!4.87e-07!39;UBERON:0006240!4.87e-07!39;UBERON:0001017!8.88e-07!73;UBERON:0005743!8.88e-07!73 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0010314,1.60e-09,92;UBERON:0002346,6.30e-09,64;UBERON:0003075,6.30e-09,64;UBERON:0007284,6.30e-09,64;UBERON:0003056,6.95e-09,49;UBERON:0010371,1.01e-08,73;UBERON:0000955,2.13e-08,47;UBERON:0006238,2.13e-08,47;UBERON:0000073,3.41e-08,54;UBERON:0002616,6.29e-08,46;UBERON:0004121,7.32e-08,95;UBERON:0000924,7.32e-08,95;UBERON:0006601,7.32e-08,95;UBERON:0002021,9.44e-08,10;UBERON:0000411,9.44e-08,10;UBERON:0001950,9.44e-08,10;UBERON:0001049,1.73e-07,52;UBERON:0005068,1.73e-07,52;UBERON:0006241,1.73e-07,52;UBERON:0007135,1.73e-07,52;UBERON:0003080,1.79e-07,40;UBERON:0002780,4.87e-07,39;UBERON:0001890,4.87e-07,39;UBERON:0006240,4.87e-07,39;UBERON:0001017,8.88e-07,73 | |||
|phase1_expression=20.0186058880992,1.04692622291808,1.36499771816861,1.20985684522732,1.50268718983904,5.20425742926858,2.80335168714631,44.6766699107854,17.4578015468067,35.577808000943,2.05461561870606,4.62678522172951,53.4146277385362,71.9469911908349,6.66219523631325,11.1361397064404,1.39912375625629,35.0163003547644,37.2951259407609,30.9804445812562,32.3164502574065,30.3830310674709,27.4259778595882,6.07971206614945,2.75291137280604,1.72269589234506,1.7230479846363,1.939241094173,5.32065574477847,3.78045194639896,3.76941868114018,3.17515336729816,3.07532393792285,0,5.19932915552294,6.81562045969819,9.18762103180661,129.744805528441,53.1308034276184,119.363413626026,164.704816648684,144.80564281119,122.348608963851,41.0423626600382,33.6571411648788,31.9371348761326,5.47673941043627,5.66865406589161,3.29529274101708,8.94377535741704,6.43937539476668,2.87505128729943,27.6841299995265,40.6202799526353,55.1193830593641,16.2073444702647,21.4900079954068,13.9231464914909,21.8501777728366,14.8117474196169,20.2826049121977,2.71075625655306,2.66788438833342,7.64914759689189,4.94433181283487,2.8419204597844,3.59520132622086,4.61061966385865,23.8486108309499,20.7909145030804,20.8221711737868,11.1403883917483,13.9147180799517,25.4780862367104,25.5907407618691,25.7381260250806,39.6417171597799,56.1824287574826,59.29212183691,20.7061471736404,27.8122436551325,28.129322010065,32.3852278841602,47.8348218526928,44.3114918552749,23.8649154233671,36.3047786037712,27.4007185363192,15.1452386666368,25.0897579554528,48.6972341018819,10.3250865237766,10.879541339324,17.2705021324101,20.7928453583254,22.8493712419641,25.4204400438471,18.2360445158522,16.1067322853779,17.3136391510067,12.9575946194546,12.8326477414318,15.2883143823987,28.4426681261332,7.36069539438128,9.12095515710355,9.0994400102661,18.1552368753305,119.629302244993,33.84480770678,19.2568712710411,16.1366703505435,16.3737003051802,23.3620092856565,34.9238460193043,19.4783216560997,16.0676729027343,41.6446147929346,30.0767587662957,26.6915302413225,22.9675179198809,25.6983884161668,20.5030937339934,100.131032577949,76.4480479869111,9.19645398750929,23.8432097766781,20.9965955847693,24.5245538251015,71.8995069143149,93.7876235778184,37.6963056338593,104.816065075943,101.263321102811,95.3747124528381,81.1206315338788,21.0807483170155,28.9868241521517,17.1851475734899,46.2972082950243,23.0313184043986,15.8632452059096,30.0703756774933,28.1818009352787,44.9040894398764,44.9679158199823,37.8554967221304,73.2130539191414,12.7185115830377,26.6639573036625,24.6331573829528,18.1932457914887,25.3022996795294,32.7357036530837,35.3945274621663,21.2966665495788,26.6841011179029,21.1025283834066,23.5855704498342,27.7548535197573,26.735970837845,25.2086886045421,35.985199808952,34.8272690192905,29.0022172228271,32.5547522650571,28.7052539497593,31.1763464120343,39.1652442794083,37.1018468818755,42.155780963845,41.6669964162197,40.6167713288444,28.9885864522403,89.7938080368823,43.425746424058,4.95628174475697,7.1401652999157,28.1540490706509,32.0486607167405,25.9023597257408,34.0845156613449,26.2406091736947,21.1150444984941,10.9141684155238,19.4344766574333,23.1228392096248,24.2726895890204,22.2259059315797,13.4822911298133,12.5360068927323,13.9398891278057,15.3630999771996,18.2797620175566,29.3040112750009,21.5870407516033,24.4380133831208,23.2850922035858,25.8637436838212,24.503284564614,28.2597710114475,21.7179008502369,14.8226313543574,11.6791574001266,10.0245087507734,11.2431056192427,10.3458661908136,9.40590923034426,11.9674150337267,18.4125527968519,17.0241988113787,12.6298250066517,48.8811902193005,17.1184835927512,13.1055822708115,16.1650481886152,22.424676690239,16.4030797263545,28.4519912856571,12.506433176852,19.7187621494851,17.8232340063948,22.2955735874077,31.6586826565032,32.6119788013839,18.9279638422065,36.7289885767425,35.2128856541552,27.7451297464028,32.1172096842846,28.8383919716046,32.9799853565846,13.5712155545345,14.6854534631052,13.769399644533,16.8321415245887,64.059685405129,58.9574783558782,10.9836413402373,21.9649706667804,20.1925260426404,29.2829058222479,31.4518160689886,30.5880061379267,29.8550223270408,28.5907296096721,28.7415598189175,37.9932615284705,37.1570511269732,96.7177162429639,30.9429385754026,17.0942979520565,23.7814960656221,36.4583971769303,22.5666735177937,16.9946445308487,15.7208249621671,21.5009790921724,19.489924930131,23.0576360957946,19.3821219876166,22.1755574981278,26.7373033788541,20.542389265828,8.4334886859999,15.470331487228,70.8114379967879,26.4689808226026,14.3588138998857,23.7914108885067,46.8178216815602,28.7173796339334,30.7706668525966,15.5277124048446,10.560226862867,6.56679419677843,11.467476698858,57.3804160236351,44.2412529146781,31.72459851221,30.4399477207998,32.6640390492672,17.7803310344209,60.2632231534156,22.042343622923,24.3536504196603,26.8532064686082,18.8368457004691,20.3674399304327,16.7008066440762,31.7859664088509,32.0488825821177,27.7781947346892,27.6854479224383,24.6742074993286,31.9211563389152,22.2491002092911,22.3724476735482,21.1811686833792,22.3874814998802,25.2919574519528,15.9671124610258,13.8688021422218,21.7468759580424,0.56369293868419,20.932316446157,11.2511773510826,20.417374776125,15.6283386408055,20.1057789334026,22.884661535922,15.2339130267422,7.65473214307689,3.62376181239009,5.76060012515731,43.2935235260604,14.1907650703115,20.8503243044599,28.5825810551149,34.194098872489,35.9613252154089,32.2123804713517,33.2301436142799,41.8001102785331,44.1237410532449,37.4065146857678,41.6145150758743,40.7938208554997,57.0359282646056,35.369939843973,1.99787358036658,0.358855426437903,2.85403847818933,36.8992124601484,23.8356743823001,26.1906822702189,31.7265201037017,15.0471631210609,115.209375893882,116.922610072823,125.464117443228,93.3162780126224,97.9668003272018,108.776721224117,108.678622537321,112.129979602831,116.457599108941,109.247425779634,14.3226539666164,20.3502685434526,18.6099630272006,26.7417388775123,21.7997689133102,20.4066294379516,34.2259960814487,30.6992235285952,29.8454864920388,26.0278128116711,30.1640366869385,29.9915882803861,29.1225088231334,29.2594946490253,28.7177344778066,25.719859329286,30.3616933975521,20.6412865896164,27.6097553538215,32.0893645892986,31.8868404718436,28.5736047916533,29.3276513635205,31.1041331593183,26.1624077554619,27.4997475647949,29.2684756596436,34.7252019097953,26.0743898584055,32.5462517561488,24.7947187879524,22.1635085345018,20.8707832016542,24.3250840661967,30.4792445350203,20.4844673909116,26.2003401458857,31.3711738910516,28.5019614782577,25.8091960369833,27.3604046032097 | |phase1_expression=20.0186058880992,1.04692622291808,1.36499771816861,1.20985684522732,1.50268718983904,5.20425742926858,2.80335168714631,44.6766699107854,17.4578015468067,35.577808000943,2.05461561870606,4.62678522172951,53.4146277385362,71.9469911908349,6.66219523631325,11.1361397064404,1.39912375625629,35.0163003547644,37.2951259407609,30.9804445812562,32.3164502574065,30.3830310674709,27.4259778595882,6.07971206614945,2.75291137280604,1.72269589234506,1.7230479846363,1.939241094173,5.32065574477847,3.78045194639896,3.76941868114018,3.17515336729816,3.07532393792285,0,5.19932915552294,6.81562045969819,9.18762103180661,129.744805528441,53.1308034276184,119.363413626026,164.704816648684,144.80564281119,122.348608963851,41.0423626600382,33.6571411648788,31.9371348761326,5.47673941043627,5.66865406589161,3.29529274101708,8.94377535741704,6.43937539476668,2.87505128729943,27.6841299995265,40.6202799526353,55.1193830593641,16.2073444702647,21.4900079954068,13.9231464914909,21.8501777728366,14.8117474196169,20.2826049121977,2.71075625655306,2.66788438833342,7.64914759689189,4.94433181283487,2.8419204597844,3.59520132622086,4.61061966385865,23.8486108309499,20.7909145030804,20.8221711737868,11.1403883917483,13.9147180799517,25.4780862367104,25.5907407618691,25.7381260250806,39.6417171597799,56.1824287574826,59.29212183691,20.7061471736404,27.8122436551325,28.129322010065,32.3852278841602,47.8348218526928,44.3114918552749,23.8649154233671,36.3047786037712,27.4007185363192,15.1452386666368,25.0897579554528,48.6972341018819,10.3250865237766,10.879541339324,17.2705021324101,20.7928453583254,22.8493712419641,25.4204400438471,18.2360445158522,16.1067322853779,17.3136391510067,12.9575946194546,12.8326477414318,15.2883143823987,28.4426681261332,7.36069539438128,9.12095515710355,9.0994400102661,18.1552368753305,119.629302244993,33.84480770678,19.2568712710411,16.1366703505435,16.3737003051802,23.3620092856565,34.9238460193043,19.4783216560997,16.0676729027343,41.6446147929346,30.0767587662957,26.6915302413225,22.9675179198809,25.6983884161668,20.5030937339934,100.131032577949,76.4480479869111,9.19645398750929,23.8432097766781,20.9965955847693,24.5245538251015,71.8995069143149,93.7876235778184,37.6963056338593,104.816065075943,101.263321102811,95.3747124528381,81.1206315338788,21.0807483170155,28.9868241521517,17.1851475734899,46.2972082950243,23.0313184043986,15.8632452059096,30.0703756774933,28.1818009352787,44.9040894398764,44.9679158199823,37.8554967221304,73.2130539191414,12.7185115830377,26.6639573036625,24.6331573829528,18.1932457914887,25.3022996795294,32.7357036530837,35.3945274621663,21.2966665495788,26.6841011179029,21.1025283834066,23.5855704498342,27.7548535197573,26.735970837845,25.2086886045421,35.985199808952,34.8272690192905,29.0022172228271,32.5547522650571,28.7052539497593,31.1763464120343,39.1652442794083,37.1018468818755,42.155780963845,41.6669964162197,40.6167713288444,28.9885864522403,89.7938080368823,43.425746424058,4.95628174475697,7.1401652999157,28.1540490706509,32.0486607167405,25.9023597257408,34.0845156613449,26.2406091736947,21.1150444984941,10.9141684155238,19.4344766574333,23.1228392096248,24.2726895890204,22.2259059315797,13.4822911298133,12.5360068927323,13.9398891278057,15.3630999771996,18.2797620175566,29.3040112750009,21.5870407516033,24.4380133831208,23.2850922035858,25.8637436838212,24.503284564614,28.2597710114475,21.7179008502369,14.8226313543574,11.6791574001266,10.0245087507734,11.2431056192427,10.3458661908136,9.40590923034426,11.9674150337267,18.4125527968519,17.0241988113787,12.6298250066517,48.8811902193005,17.1184835927512,13.1055822708115,16.1650481886152,22.424676690239,16.4030797263545,28.4519912856571,12.506433176852,19.7187621494851,17.8232340063948,22.2955735874077,31.6586826565032,32.6119788013839,18.9279638422065,36.7289885767425,35.2128856541552,27.7451297464028,32.1172096842846,28.8383919716046,32.9799853565846,13.5712155545345,14.6854534631052,13.769399644533,16.8321415245887,64.059685405129,58.9574783558782,10.9836413402373,21.9649706667804,20.1925260426404,29.2829058222479,31.4518160689886,30.5880061379267,29.8550223270408,28.5907296096721,28.7415598189175,37.9932615284705,37.1570511269732,96.7177162429639,30.9429385754026,17.0942979520565,23.7814960656221,36.4583971769303,22.5666735177937,16.9946445308487,15.7208249621671,21.5009790921724,19.489924930131,23.0576360957946,19.3821219876166,22.1755574981278,26.7373033788541,20.542389265828,8.4334886859999,15.470331487228,70.8114379967879,26.4689808226026,14.3588138998857,23.7914108885067,46.8178216815602,28.7173796339334,30.7706668525966,15.5277124048446,10.560226862867,6.56679419677843,11.467476698858,57.3804160236351,44.2412529146781,31.72459851221,30.4399477207998,32.6640390492672,17.7803310344209,60.2632231534156,22.042343622923,24.3536504196603,26.8532064686082,18.8368457004691,20.3674399304327,16.7008066440762,31.7859664088509,32.0488825821177,27.7781947346892,27.6854479224383,24.6742074993286,31.9211563389152,22.2491002092911,22.3724476735482,21.1811686833792,22.3874814998802,25.2919574519528,15.9671124610258,13.8688021422218,21.7468759580424,0.56369293868419,20.932316446157,11.2511773510826,20.417374776125,15.6283386408055,20.1057789334026,22.884661535922,15.2339130267422,7.65473214307689,3.62376181239009,5.76060012515731,43.2935235260604,14.1907650703115,20.8503243044599,28.5825810551149,34.194098872489,35.9613252154089,32.2123804713517,33.2301436142799,41.8001102785331,44.1237410532449,37.4065146857678,41.6145150758743,40.7938208554997,57.0359282646056,35.369939843973,1.99787358036658,0.358855426437903,2.85403847818933,36.8992124601484,23.8356743823001,26.1906822702189,31.7265201037017,15.0471631210609,115.209375893882,116.922610072823,125.464117443228,93.3162780126224,97.9668003272018,108.776721224117,108.678622537321,112.129979602831,116.457599108941,109.247425779634,14.3226539666164,20.3502685434526,18.6099630272006,26.7417388775123,21.7997689133102,20.4066294379516,34.2259960814487,30.6992235285952,29.8454864920388,26.0278128116711,30.1640366869385,29.9915882803861,29.1225088231334,29.2594946490253,28.7177344778066,25.719859329286,30.3616933975521,20.6412865896164,27.6097553538215,32.0893645892986,31.8868404718436,28.5736047916533,29.3276513635205,31.1041331593183,26.1624077554619,27.4997475647949,29.2684756596436,34.7252019097953,26.0743898584055,32.5462517561488,24.7947187879524,22.1635085345018,20.8707832016542,24.3250840661967,30.4792445350203,20.4844673909116,26.2003401458857,31.3711738910516,28.5019614782577,25.8091960369833,27.3604046032097 | ||
|short_description=p1@Srpk2 | |||
}} | }} |
Latest revision as of 20:21, 25 September 2015
Short description: | p1@Srpk2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Srpk2_5end |
Coexpression cluster: | MCL_coexpression_mm9:3362 |
Association with transcript: | 0bp_to_ENSMUST00000088392, NM_009274, uc008wqe.1, uc008wqg.1_5end |
EntrezGene: | Srpk2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
structure with developmental contribution from neural crest | 1.60e-09 | 92 |
neurectoderm | 6.30e-09 | 64 |
neural plate | 6.30e-09 | 64 |
presumptive neural plate | 6.30e-09 | 64 |
pre-chordal neural plate | 6.95e-09 | 49 |
ecto-epithelium | 1.01e-08 | 73 |
brain | 2.13e-08 | 47 |
future brain | 2.13e-08 | 47 |
regional part of nervous system | 3.41e-08 | 54 |
regional part of brain | 6.29e-08 | 46 |
ectoderm-derived structure | 7.32e-08 | 95 |
ectoderm | 7.32e-08 | 95 |
presumptive ectoderm | 7.32e-08 | 95 |
occipital lobe | 9.44e-08 | 10 |
visual cortex | 9.44e-08 | 10 |
neocortex | 9.44e-08 | 10 |
neural tube | 1.73e-07 | 52 |
neural rod | 1.73e-07 | 52 |
future spinal cord | 1.73e-07 | 52 |
neural keel | 1.73e-07 | 52 |
anterior neural tube | 1.79e-07 | 40 |
regional part of forebrain | 4.87e-07 | 39 |
forebrain | 4.87e-07 | 39 |
future forebrain | 4.87e-07 | 39 |
central nervous system | 8.88e-07 | 73 |