FFCP PHASE1:Mm9::chr7:130521519..130521600,+: Difference between revisions
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{{FFCP|EntrezGene=30949|HGNC=|MCL_coexpression_id=1|UniProt=A2RTH5|association_with_transcript=23bp_to_ENSMUST00000033025,NM_025304,uc009jpp.1,uc012ftj.1_5end|description=CAGE_peak_1_at_Lcmt1_5end|id=chr7:130521519..130521600,+|ontology_enrichment_celltype=CL:0000117!1.80e-12!23;CL:0000337!1.80e-12!23;CL:0000540!5.17e-09!33;CL:0000047!5.17e-09!33;CL:0000031!5.17e-09!33;CL:0000404!5.17e-09!33;CL:0000393!6.89e-09!39;CL:0000211!6.89e-09!39|ontology_enrichment_celltype_v019_2=CL:0000117,1.80e-12,23;CL:0000337,1.80e-12,23;CL:0000540,5.17e-09,33;CL:0000047,5.17e-09,33;CL:0000031,5.17e-09,33;CL:0000404,5.17e-09,33;CL:0000393,6.89e-09,39;CL:0000211,6.89e-09,39|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!4.40e-23!52;UBERON:0005068!4.40e-23!52;UBERON:0006241!4.40e-23!52;UBERON:0007135!4.40e-23!52;UBERON:0000955!3.03e-22!50;UBERON:0006238!3.03e-22!50;UBERON:0002616!9.82e-22!49;UBERON:0001017!1.01e-21!73;UBERON:0005743!1.01e-21!73;UBERON:0000033!1.18e-20!63;UBERON:0000073!7.07e-20!75;UBERON:0001016!7.07e-20!75;UBERON:0002346!7.37e-20!71;UBERON:0003075!7.37e-20!71;UBERON:0007284!7.37e-20!71;UBERON:0002020!2.93e-18!34;UBERON:0003080!1.03e-17!40;UBERON:0003056!1.80e-17!49;UBERON:0002780!4.40e-17!39;UBERON:0001890!4.40e-17!39;UBERON:0006240!4.40e-17!39;UBERON:0002791!1.08e-15!29;UBERON:0003528!1.08e-15!29;UBERON:0001893!1.08e-15!29;UBERON:0004121!1.14e-12!102;UBERON:0000924!1.14e-12!102;UBERON:0006601!1.14e-12!102;UBERON:0000956!1.95e-11!21;UBERON:0001869!1.95e-11!21;UBERON:0000203!1.95e-11!21;UBERON:0007811!2.85e-10!86;UBERON:0002619!1.30e-09!17;UBERON:0000153!2.59e-09!94;UBERON:0002021!4.34e-08!10;UBERON:0000411!4.34e-08!10;UBERON:0001950!4.34e-08!10|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.64e-24,54;UBERON:0002346,3.73e-23,64;UBERON:0003075,3.73e-23,64;UBERON:0007284,3.73e-23,64;UBERON:0001049,4.40e-23,52;UBERON:0005068,4.40e-23,52;UBERON:0006241,4.40e-23,52;UBERON:0007135,4.40e-23,52;UBERON:0001017,1.01e-21,73;UBERON:0000955,2.53e-20,47;UBERON:0006238,2.53e-20,47;UBERON:0001016,7.07e-20,75;UBERON:0002616,8.03e-20,46;UBERON:0002020,2.93e-18,34;UBERON:0003080,1.03e-17,40;UBERON:0010371,1.49e-17,73;UBERON:0003056,1.80e-17,49;UBERON:0002780,4.40e-17,39;UBERON:0001890,4.40e-17,39;UBERON:0006240,4.40e-17,39;UBERON:0010314,1.02e-15,92;UBERON:0003528,1.08e-15,29;UBERON:0002791,1.08e-15,29;UBERON:0001893,1.08e-15,29;UBERON:0004121,2.32e-14,95;UBERON:0000924,2.32e-14,95;UBERON:0006601,2.32e-14,95;UBERON:0000956,1.95e-11,21;UBERON:0001869,1.95e-11,21;UBERON:0000203,1.95e-11,21;UBERON:0002619,1.30e-09,17;UBERON:0002021,4.34e-08,10;UBERON:0000411,4.34e-08,10;UBERON:0001950,4.34e-08,10|phase1_expression=42.5995933298752,47.8096308465925,32.3049459966571,57.4682001482977,50.0895729946347,25.6855286025191,28.0335168714631,40.9320935309797,12.248618827195,12.4054198950657,13.5262194898149,11.9658238493005,23.6257007305064,23.8657698603863,28.647439516147,31.1811911780332,34.2785320282792,14.1957974411207,15.219702130237,19.0975343309114,42.7767749459881,35.7447424323187,44.403964153619,45.4378480733275,38.3113499382174,38.4735415957064,37.0455316696804,32.1052136701975,45.7956440889861,53.9344477686252,25.49900872536,37.4668097341182,53.5106365198576,79.2408405077194,62.6808014860266,70.8159589227177,55.5340649033644,31.3898723052681,28.1280724028568,38.7407570540611,29.4115744015507,32.7861832780054,36.8987868303677,45.1969576532322,39.7397570380497,81.6783047119483,38.3371758730539,43.3870061197089,33.8316721411087,44.5244468880109,38.7762387902254,37.3756667348926,11.2414346058683,17.4086914082723,20.5017217476903,32.9292078126012,40.4012150313647,35.5813743671435,63.1227357881945,92.5734213726058,80.4965882452848,35.5786758672589,37.3503814366679,29.6966906702862,43.5101199529469,40.4973665519277,28.4620104992484,27.6637179831519,54.3333568496423,68.4480107341672,70.6691870140644,82.838785477103,85.0343882663712,67.0024671705799,56.5488279007595,89.164222301172,153.06107458915,81.2091470221794,83.7155606246527,71.3504816620349,73.8305283871446,79.1788323246275,81.2422527094019,104.111082855861,76.5519221361819,80.7282324197849,66.9146899755784,66.9174010512829,20.976155553292,27.2813331985496,46.9580471696718,24.9522924324602,6.79971333707751,27.5248627735287,22.7421746106684,21.5052905806721,36.3751048141237,30.6774580640504,35.8504686351959,37.4539948980961,48.1684495636247,17.9657068380045,10.1922095882658,14.2213340630666,38.3189142589849,30.6565437224869,32.3535644809461,25.5771890570694,15.2773351351831,29.8368699520298,36.6054039476547,44.4519598335726,31.363707626824,41.2980035114186,27.868523591162,29.4059823711441,29.9105910958592,25.3048874609845,20.3460426948471,28.6327324406914,22.9675179198809,26.183263669302,46.5979403045305,84.6136503363371,74.7724743324035,42.4058711646262,33.3086046126458,37.1939693215913,38.5022788031386,93.3195683492045,96.9901277975488,83.9371072113934,116.636118849018,97.6833047001863,91.0111635170873,89.5571772134022,32.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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=30949 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=A2RTH5 | |||
|association_with_transcript=23bp_to_ENSMUST00000033025,NM_025304,uc009jpp.1,uc012ftj.1_5end | |||
|cluster_id=chr7:130521519..130521600,+ | |||
|description=CAGE_peak_1_at_Lcmt1_5end | |||
|id=chr7:130521519..130521600,+ | |||
|ontology_enrichment_celltype=CL:0000117!1.80e-12!23;CL:0000337!1.80e-12!23;CL:0000540!5.17e-09!33;CL:0000047!5.17e-09!33;CL:0000031!5.17e-09!33;CL:0000404!5.17e-09!33;CL:0000393!6.89e-09!39;CL:0000211!6.89e-09!39 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,1.80e-12,23;CL:0000337,1.80e-12,23;CL:0000540,5.17e-09,33;CL:0000047,5.17e-09,33;CL:0000031,5.17e-09,33;CL:0000404,5.17e-09,33;CL:0000393,6.89e-09,39;CL:0000211,6.89e-09,39 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!4.40e-23!52;UBERON:0005068!4.40e-23!52;UBERON:0006241!4.40e-23!52;UBERON:0007135!4.40e-23!52;UBERON:0000955!3.03e-22!50;UBERON:0006238!3.03e-22!50;UBERON:0002616!9.82e-22!49;UBERON:0001017!1.01e-21!73;UBERON:0005743!1.01e-21!73;UBERON:0000033!1.18e-20!63;UBERON:0000073!7.07e-20!75;UBERON:0001016!7.07e-20!75;UBERON:0002346!7.37e-20!71;UBERON:0003075!7.37e-20!71;UBERON:0007284!7.37e-20!71;UBERON:0002020!2.93e-18!34;UBERON:0003080!1.03e-17!40;UBERON:0003056!1.80e-17!49;UBERON:0002780!4.40e-17!39;UBERON:0001890!4.40e-17!39;UBERON:0006240!4.40e-17!39;UBERON:0002791!1.08e-15!29;UBERON:0003528!1.08e-15!29;UBERON:0001893!1.08e-15!29;UBERON:0004121!1.14e-12!102;UBERON:0000924!1.14e-12!102;UBERON:0006601!1.14e-12!102;UBERON:0000956!1.95e-11!21;UBERON:0001869!1.95e-11!21;UBERON:0000203!1.95e-11!21;UBERON:0007811!2.85e-10!86;UBERON:0002619!1.30e-09!17;UBERON:0000153!2.59e-09!94;UBERON:0002021!4.34e-08!10;UBERON:0000411!4.34e-08!10;UBERON:0001950!4.34e-08!10 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,1.64e-24,54;UBERON:0002346,3.73e-23,64;UBERON:0003075,3.73e-23,64;UBERON:0007284,3.73e-23,64;UBERON:0001049,4.40e-23,52;UBERON:0005068,4.40e-23,52;UBERON:0006241,4.40e-23,52;UBERON:0007135,4.40e-23,52;UBERON:0001017,1.01e-21,73;UBERON:0000955,2.53e-20,47;UBERON:0006238,2.53e-20,47;UBERON:0001016,7.07e-20,75;UBERON:0002616,8.03e-20,46;UBERON:0002020,2.93e-18,34;UBERON:0003080,1.03e-17,40;UBERON:0010371,1.49e-17,73;UBERON:0003056,1.80e-17,49;UBERON:0002780,4.40e-17,39;UBERON:0001890,4.40e-17,39;UBERON:0006240,4.40e-17,39;UBERON:0010314,1.02e-15,92;UBERON:0003528,1.08e-15,29;UBERON:0002791,1.08e-15,29;UBERON:0001893,1.08e-15,29;UBERON:0004121,2.32e-14,95;UBERON:0000924,2.32e-14,95;UBERON:0006601,2.32e-14,95;UBERON:0000956,1.95e-11,21;UBERON:0001869,1.95e-11,21;UBERON:0000203,1.95e-11,21;UBERON:0002619,1.30e-09,17;UBERON:0002021,4.34e-08,10;UBERON:0000411,4.34e-08,10;UBERON:0001950,4.34e-08,10 | |||
|phase1_expression=42.5995933298752,47.8096308465925,32.3049459966571,57.4682001482977,50.0895729946347,25.6855286025191,28.0335168714631,40.9320935309797,12.248618827195,12.4054198950657,13.5262194898149,11.9658238493005,23.6257007305064,23.8657698603863,28.647439516147,31.1811911780332,34.2785320282792,14.1957974411207,15.219702130237,19.0975343309114,42.7767749459881,35.7447424323187,44.403964153619,45.4378480733275,38.3113499382174,38.4735415957064,37.0455316696804,32.1052136701975,45.7956440889861,53.9344477686252,25.49900872536,37.4668097341182,53.5106365198576,79.2408405077194,62.6808014860266,70.8159589227177,55.5340649033644,31.3898723052681,28.1280724028568,38.7407570540611,29.4115744015507,32.7861832780054,36.8987868303677,45.1969576532322,39.7397570380497,81.6783047119483,38.3371758730539,43.3870061197089,33.8316721411087,44.5244468880109,38.7762387902254,37.3756667348926,11.2414346058683,17.4086914082723,20.5017217476903,32.9292078126012,40.4012150313647,35.5813743671435,63.1227357881945,92.5734213726058,80.4965882452848,35.5786758672589,37.3503814366679,29.6966906702862,43.5101199529469,40.4973665519277,28.4620104992484,27.6637179831519,54.3333568496423,68.4480107341672,70.6691870140644,82.838785477103,85.0343882663712,67.0024671705799,56.5488279007595,89.164222301172,153.06107458915,81.2091470221794,83.7155606246527,71.3504816620349,73.8305283871446,79.1788323246275,81.2422527094019,104.111082855861,76.5519221361819,80.7282324197849,66.9146899755784,66.9174010512829,20.976155553292,27.2813331985496,46.9580471696718,24.9522924324602,6.79971333707751,27.5248627735287,22.7421746106684,21.5052905806721,36.3751048141237,30.6774580640504,35.8504686351959,37.4539948980961,48.1684495636247,17.9657068380045,10.1922095882658,14.2213340630666,38.3189142589849,30.6565437224869,32.3535644809461,25.5771890570694,15.2773351351831,29.8368699520298,36.6054039476547,44.4519598335726,31.363707626824,41.2980035114186,27.868523591162,29.4059823711441,29.9105910958592,25.3048874609845,20.3460426948471,28.6327324406914,22.9675179198809,26.183263669302,46.5979403045305,84.6136503363371,74.7724743324035,42.4058711646262,33.3086046126458,37.1939693215913,38.5022788031386,93.3195683492045,96.9901277975488,83.9371072113934,116.636118849018,97.6833047001863,91.0111635170873,89.5571772134022,32.5885964321012,42.4227769780417,119.032419222261,39.5630689066571,46.3228776947225,43.4514977379264,39.0734821677608,49.5818850679503,36.6036365434144,40.099594449158,37.1995846502123,45.7904966208058,39.8800786925758,40.2795950757455,38.7092473160687,33.5369470614189,39.2046621408093,36.9147296513497,33.7482703709027,42.5933330991575,49.8571362992397,50.1828418873695,35.5204374244491,35.0042555584998,37.0551174770132,38.3532190911962,33.3810077175146,35.2207974827853,35.7899701898718,35.1126256573116,32.9976283721532,29.0745702494252,30.2790123840804,44.3252153013557,38.6698221533732,39.9125965671157,42.5927223664638,34.8936688776967,104.724394384935,70.6954687045684,77.6484140011925,59.2369269326339,42.870938357582,45.9828610283668,29.3817811814373,28.840744021138,34.0238407082652,31.3872283085723,48.8764933390847,46.6098041868951,38.202951737641,40.7860767684359,39.3827455980623,38.6492345721315,45.6051285235605,53.7681437786791,55.3830270782998,42.7289437160386,45.0830942692322,48.8763186828754,47.7123118432359,31.490983130753,38.827233794294,39.707129806513,45.5296310739987,42.3252272251776,20.7516838961004,38.2075292089855,33.2184701741313,42.2740771283525,38.1377028210385,32.8000937263287,31.3189797691146,29.0573098825319,14.5921704097532,23.0631587077988,12.9391385874619,19.3513292787622,21.2185617717901,17.4279425783507,25.2950353065896,18.332853811808,29.0062508561569,33.7294712951463,32.7559602648472,39.0413697282933,37.5504397261603,28.141051250225,33.3261097240419,16.3912264200551,33.2610154064063,31.2265212404773,23.5993057613081,33.4281162020105,28.147652044141,31.9674419465141,15.0791283939272,30.4587182938477,24.5882136509518,30.3530420935206,88.4633750832734,81.8137572413578,22.2951525712279,44.687354115174,37.8609863299508,45.6813330827067,45.6697603193534,31.0659437338318,25.6218475194753,34.8184132870264,38.457016659115,34.1939353756235,33.994748903401,71.3333322456412,37.8980027506077,46.1189913498191,34.8578093016653,42.3973216039416,50.4431525691859,50.9839335925461,48.0694455573954,46.7740597794627,45.1811896107582,36.8922177532713,30.4945385938501,34.535704300363,32.7977588113944,30.97160227771,44.2758156014995,52.5991270565753,55.4916557378674,46.455762260078,48.8975824698812,40.2953625859394,39.3695318685847,36.0305011556183,42.124549274143,46.5831372145337,42.4755791595316,40.2480934641258,49.1778327662565,26.8764592294612,28.2562746717835,24.8489250704002,29.6043413127778,26.4266848589549,44.0136063311075,76.024373824309,27.5102118084543,32.4027382702259,37.224100001312,33.1528484328256,37.5909126232819,24.4792645330979,20.9073468892442,32.4687369390887,23.493995546752,30.5494597764836,35.113295287506,3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| |||
|short_description=p1@Lcmt1 | |||
}} |
Latest revision as of 20:16, 25 September 2015
Short description: | p1@Lcmt1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Lcmt1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 23bp_to_ENSMUST00000033025, NM_025304, uc009jpp.1, uc012ftj.1_5end |
EntrezGene: | Lcmt1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 1.80e-12 | 23 |
neuroblast (sensu Vertebrata) | 1.80e-12 | 23 |
neuron | 5.17e-09 | 33 |
neuronal stem cell | 5.17e-09 | 33 |
neuroblast | 5.17e-09 | 33 |
electrically signaling cell | 5.17e-09 | 33 |
electrically responsive cell | 6.89e-09 | 39 |
electrically active cell | 6.89e-09 | 39 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 1.64e-24 | 54 |
neurectoderm | 3.73e-23 | 64 |
neural plate | 3.73e-23 | 64 |
presumptive neural plate | 3.73e-23 | 64 |
neural tube | 4.40e-23 | 52 |
neural rod | 4.40e-23 | 52 |
future spinal cord | 4.40e-23 | 52 |
neural keel | 4.40e-23 | 52 |
central nervous system | 1.01e-21 | 73 |
brain | 2.53e-20 | 47 |
future brain | 2.53e-20 | 47 |
nervous system | 7.07e-20 | 75 |
regional part of brain | 8.03e-20 | 46 |
gray matter | 2.93e-18 | 34 |
anterior neural tube | 1.03e-17 | 40 |
ecto-epithelium | 1.49e-17 | 73 |
pre-chordal neural plate | 1.80e-17 | 49 |
regional part of forebrain | 4.40e-17 | 39 |
forebrain | 4.40e-17 | 39 |
future forebrain | 4.40e-17 | 39 |
structure with developmental contribution from neural crest | 1.02e-15 | 92 |
brain grey matter | 1.08e-15 | 29 |
regional part of telencephalon | 1.08e-15 | 29 |
telencephalon | 1.08e-15 | 29 |
ectoderm-derived structure | 2.32e-14 | 95 |
ectoderm | 2.32e-14 | 95 |
presumptive ectoderm | 2.32e-14 | 95 |
cerebral cortex | 1.95e-11 | 21 |
cerebral hemisphere | 1.95e-11 | 21 |
pallium | 1.95e-11 | 21 |
regional part of cerebral cortex | 1.30e-09 | 17 |
occipital lobe | 4.34e-08 | 10 |
visual cortex | 4.34e-08 | 10 |
neocortex | 4.34e-08 | 10 |