FFCP PHASE1:Mm9::chr16:91011374..91011415,-: Difference between revisions
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{{FFCP|EntrezGene=104015|HGNC=|MCL_coexpression_id=1|UniProt=F7BQW7|association_with_transcript=-16bp_to_ENSMUST00000118390_5end|description=CAGE_peak_2_at_Synj1_5end|id=chr16:91011374..91011415,-|ontology_enrichment_celltype=CL:0000117!5.73e-11!23;CL:0000337!5.73e-11!23;CL:0000540!4.41e-07!33;CL:0000047!4.41e-07!33;CL:0000031!4.41e-07!33;CL:0000404!4.41e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,4.44e-11,23;CL:0000337,4.44e-11,23;CL:0000540,4.38e-07,33;CL:0000047,4.38e-07,33;CL:0000031,4.38e-07,33;CL:0000404,4.38e-07,33|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0000033!1.22e-16!63;UBERON:0001049!6.18e-16!52;UBERON:0005068!6.18e-16!52;UBERON:0006241!6.18e-16!52;UBERON:0007135!6.18e-16!52;UBERON:0000955!3.10e-15!50;UBERON:0006238!3.10e-15!50;UBERON:0007811!5.22e-15!86;UBERON:0002616!1.11e-14!49;UBERON:0002020!1.58e-14!34;UBERON:0003056!4.67e-14!49;UBERON:0002346!4.91e-14!71;UBERON:0003075!4.91e-14!71;UBERON:0007284!4.91e-14!71;UBERON:0001017!1.20e-13!73;UBERON:0005743!1.20e-13!73;UBERON:0000073!4.53e-13!75;UBERON:0001016!4.53e-13!75;UBERON:0003080!1.74e-12!40;UBERON:0000153!2.33e-12!94;UBERON:0002791!4.33e-12!29;UBERON:0003528!4.33e-12!29;UBERON:0001893!4.33e-12!29;UBERON:0002780!6.26e-12!39;UBERON:0001890!6.26e-12!39;UBERON:0006240!6.26e-12!39;UBERON:0004121!2.11e-11!102;UBERON:0000924!2.11e-11!102;UBERON:0006601!2.11e-11!102;UBERON:0000956!5.51e-08!21;UBERON:0001869!5.51e-08!21;UBERON:0000203!5.51e-08!21;UBERON:0002021!9.72e-08!10;UBERON:0000411!9.72e-08!10;UBERON:0001950!9.72e-08!10;UBERON:0002619!4.04e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.66e-17,54;UBERON:0002346,1.26e-16,64;UBERON:0003075,1.26e-16,64;UBERON:0007284,1.26e-16,64;UBERON:0001049,4.72e-16,52;UBERON:0005068,4.72e-16,52;UBERON:0006241,4.72e-16,52;UBERON:0007135,4.72e-16,52;UBERON:0002020,9.21e-15,34;UBERON:0010371,4.14e-14,73;UBERON:0003056,4.23e-14,49;UBERON:0001017,7.86e-14,73;UBERON:0000955,1.60e-13,47;UBERON:0006238,1.60e-13,47;UBERON:0001016,3.03e-13,75;UBERON:0004121,3.04e-13,95;UBERON:0000924,3.04e-13,95;UBERON:0006601,3.04e-13,95;UBERON:0002616,5.53e-13,46;UBERON:0003080,1.66e-12,40;UBERON:0003528,2.72e-12,29;UBERON:0002791,2.72e-12,29;UBERON:0001893,2.72e-12,29;UBERON:0002780,6.02e-12,39;UBERON:0001890,6.02e-12,39;UBERON:0006240,6.02e-12,39;UBERON:0010314,6.62e-10,92;UBERON:0000956,3.92e-08,21;UBERON:0001869,3.92e-08,21;UBERON:0000203,3.92e-08,21;UBERON:0002021,8.22e-08,10;UBERON:0000411,8.22e-08,10;UBERON:0001950,8.22e-08,10;UBERON:0002619,2.92e-07,17|phase1_expression=2.08193501236232,1.74487703819681,1.36499771816861,1.20985684522732,1.00179145989269,0.671517087647559,0.233612640595526,2.1950964985068,0.985521055061667,2.10658073689794,1.36974374580404,0.717949430958028,1.54080656938085,1.22388563386596,5.3297561890506,2.42970320867791,4.19737126876888,1.57731082679119,3.56497527374921,1.69755860719212,9.77997836737302,0.496454756004426,1.04479915655574,0.319984845586813,0.68822784320151,1.14846392823004,1.29228598847722,0.861884930743556,0.760093677825496,0.756090389279792,0.443461021310609,0,0,0,0.577703239502549,0.498703936075477,0.408338712524738,4.18531630736908,1.5626706890476,4.18818995179039,7.05877785637217,4.78131839470912,2.91306211818692,1.00717454380462,0.608261587317087,1.10128051297009,0.782391344348039,0,0.439372365468944,0.58328969722285,0.699932108126813,1.43752564364972,3.18786951509699,3.62681071005672,3.02484419228218,0.257259436035947,0.85960031981627,0.515672092277442,7.28339259094552,6.34789175126439,10.775133859605,0,0,0,0,0,0,0.384218305321555,4.97710139080693,3.24014251996058,1.89292465216244,9.99778445413313,8.83474163806454,4.89963196859816,4.98396449294829,3.67687514644008,25.3266526298594,34.2202066068303,36.5583549149859,7.91317726381163,10.6125666578795,6.25096044668112,27.9182999001381,28.138130501584,29.0316670775939,10.3120004915784,13.2405663143166,6.52398060388552,1.13589289999776,1.73814588245607,1.15945795480671,0.860423876981386,0.679971333707751,0,1.29955283489534,0,2.52799956237153,1.70430322578058,0.259786004602869,1.06001872353102,2.39433813620357,6.41632387071589,7.64415719119937,0,0,0,0.505524445014783,1.7127581957859,4.14300613835475,2.67195850316685,0.867426633830679,0.913396434936424,1.15307748628029,1.65794904607885,2.23418543557839,0.879666139307728,1.97755974187499,1.73519228303894,2.65383165584962,1.94120219936891,2.87093973998512,2.42437626567611,0,18.4451902117275,16.9651832518899,1.53274233125155,2.51611761462433,0,1.39777249780371,27.5614776504874,30.1950397860293,8.04187853522332,39.1104720432622,35.0330176542553,25.3501414362663,26.120843353909,1.52759045775474,1.61729061793121,1.26361379216837,5.89237196482127,1.17108398666433,1.83921683546778,2.70093194708024,3.91832526372859,4.89862793889561,4.86832137082429,4.2165776051878,13.1938719076898,1.07783996466421,0.945530400839096,1.75951124163949,0.657587197282725,1.11218899690239,0.348252166522167,1.23469281844766,0.796137067273973,1.404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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=104015 | |||
|HGNC= | |||
|MCL_coexpression_id=1 | |||
|TSSclassifier=NA | |||
|UniProt=F7BQW7 | |||
|association_with_transcript=-16bp_to_ENSMUST00000118390_5end | |||
|cluster_id=chr16:91011374..91011415,- | |||
|description=CAGE_peak_2_at_Synj1_5end | |||
|id=chr16:91011374..91011415,- | |||
|ontology_enrichment_celltype=CL:0000117!5.73e-11!23;CL:0000337!5.73e-11!23;CL:0000540!4.41e-07!33;CL:0000047!4.41e-07!33;CL:0000031!4.41e-07!33;CL:0000404!4.41e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,4.44e-11,23;CL:0000337,4.44e-11,23;CL:0000540,4.38e-07,33;CL:0000047,4.38e-07,33;CL:0000031,4.38e-07,33;CL:0000404,4.38e-07,33 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0000033!1.22e-16!63;UBERON:0001049!6.18e-16!52;UBERON:0005068!6.18e-16!52;UBERON:0006241!6.18e-16!52;UBERON:0007135!6.18e-16!52;UBERON:0000955!3.10e-15!50;UBERON:0006238!3.10e-15!50;UBERON:0007811!5.22e-15!86;UBERON:0002616!1.11e-14!49;UBERON:0002020!1.58e-14!34;UBERON:0003056!4.67e-14!49;UBERON:0002346!4.91e-14!71;UBERON:0003075!4.91e-14!71;UBERON:0007284!4.91e-14!71;UBERON:0001017!1.20e-13!73;UBERON:0005743!1.20e-13!73;UBERON:0000073!4.53e-13!75;UBERON:0001016!4.53e-13!75;UBERON:0003080!1.74e-12!40;UBERON:0000153!2.33e-12!94;UBERON:0002791!4.33e-12!29;UBERON:0003528!4.33e-12!29;UBERON:0001893!4.33e-12!29;UBERON:0002780!6.26e-12!39;UBERON:0001890!6.26e-12!39;UBERON:0006240!6.26e-12!39;UBERON:0004121!2.11e-11!102;UBERON:0000924!2.11e-11!102;UBERON:0006601!2.11e-11!102;UBERON:0000956!5.51e-08!21;UBERON:0001869!5.51e-08!21;UBERON:0000203!5.51e-08!21;UBERON:0002021!9.72e-08!10;UBERON:0000411!9.72e-08!10;UBERON:0001950!9.72e-08!10;UBERON:0002619!4.04e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,2.66e-17,54;UBERON:0002346,1.26e-16,64;UBERON:0003075,1.26e-16,64;UBERON:0007284,1.26e-16,64;UBERON:0001049,4.72e-16,52;UBERON:0005068,4.72e-16,52;UBERON:0006241,4.72e-16,52;UBERON:0007135,4.72e-16,52;UBERON:0002020,9.21e-15,34;UBERON:0010371,4.14e-14,73;UBERON:0003056,4.23e-14,49;UBERON:0001017,7.86e-14,73;UBERON:0000955,1.60e-13,47;UBERON:0006238,1.60e-13,47;UBERON:0001016,3.03e-13,75;UBERON:0004121,3.04e-13,95;UBERON:0000924,3.04e-13,95;UBERON:0006601,3.04e-13,95;UBERON:0002616,5.53e-13,46;UBERON:0003080,1.66e-12,40;UBERON:0003528,2.72e-12,29;UBERON:0002791,2.72e-12,29;UBERON:0001893,2.72e-12,29;UBERON:0002780,6.02e-12,39;UBERON:0001890,6.02e-12,39;UBERON:0006240,6.02e-12,39;UBERON:0010314,6.62e-10,92;UBERON:0000956,3.92e-08,21;UBERON:0001869,3.92e-08,21;UBERON:0000203,3.92e-08,21;UBERON:0002021,8.22e-08,10;UBERON:0000411,8.22e-08,10;UBERON:0001950,8.22e-08,10;UBERON:0002619,2.92e-07,17 | |||
|phase1_expression=2.08193501236232,1.74487703819681,1.36499771816861,1.20985684522732,1.00179145989269,0.671517087647559,0.233612640595526,2.1950964985068,0.985521055061667,2.10658073689794,1.36974374580404,0.717949430958028,1.54080656938085,1.22388563386596,5.3297561890506,2.42970320867791,4.19737126876888,1.57731082679119,3.56497527374921,1.69755860719212,9.77997836737302,0.496454756004426,1.04479915655574,0.319984845586813,0.68822784320151,1.14846392823004,1.29228598847722,0.861884930743556,0.760093677825496,0.756090389279792,0.443461021310609,0,0,0,0.577703239502549,0.498703936075477,0.408338712524738,4.18531630736908,1.5626706890476,4.18818995179039,7.05877785637217,4.78131839470912,2.91306211818692,1.00717454380462,0.608261587317087,1.10128051297009,0.782391344348039,0,0.439372365468944,0.58328969722285,0.699932108126813,1.43752564364972,3.18786951509699,3.62681071005672,3.02484419228218,0.257259436035947,0.85960031981627,0.515672092277442,7.28339259094552,6.34789175126439,10.775133859605,0,0,0,0,0,0,0.384218305321555,4.97710139080693,3.24014251996058,1.89292465216244,9.99778445413313,8.83474163806454,4.89963196859816,4.98396449294829,3.67687514644008,25.3266526298594,34.2202066068303,36.5583549149859,7.91317726381163,10.6125666578795,6.25096044668112,27.9182999001381,28.138130501584,29.0316670775939,10.3120004915784,13.2405663143166,6.52398060388552,1.13589289999776,1.73814588245607,1.15945795480671,0.860423876981386,0.679971333707751,0,1.29955283489534,0,2.52799956237153,1.70430322578058,0.259786004602869,1.06001872353102,2.39433813620357,6.41632387071589,7.64415719119937,0,0,0,0.505524445014783,1.7127581957859,4.14300613835475,2.67195850316685,0.867426633830679,0.913396434936424,1.15307748628029,1.65794904607885,2.23418543557839,0.879666139307728,1.97755974187499,1.73519228303894,2.65383165584962,1.94120219936891,2.87093973998512,2.42437626567611,0,18.4451902117275,16.9651832518899,1.53274233125155,2.51611761462433,0,1.39777249780371,27.5614776504874,30.1950397860293,8.04187853522332,39.1104720432622,35.0330176542553,25.3501414362663,26.120843353909,1.52759045775474,1.61729061793121,1.26361379216837,5.89237196482127,1.17108398666433,1.83921683546778,2.70093194708024,3.91832526372859,4.89862793889561,4.86832137082429,4.2165776051878,13.1938719076898,1.07783996466421,0.945530400839096,1.75951124163949,0.657587197282725,1.11218899690239,0.348252166522167,1.23469281844766,0.796137067273973,1.40442637462647,0.772043721344145,0.852490498186778,1.24275463521301,1.87620847984877,0.540186184383045,1.18372367792605,1.18058539048442,1.07986979021165,2.32533944750408,1.07309360559848,2.45207218971056,1.97471819896177,3.11918181750281,2.35099547682982,1.75439984910399,1.97595103761946,2.68412837520744,42.4785696099537,9.36431972651488,1.98251269790279,1.05780226665418,0.639864751605702,1.39342003116263,1.28867461322093,0.605050573870028,1.11189021922435,1.52180500890047,0.949058123089023,1.15289268306808,2.5133520880027,1.59165177632921,0.974820435595601,0.898819408654221,0.648414149624083,1.7922714592893,0.379335801906163,1.25673363870702,1.1270773567308,1.22190796707189,0.775809948670503,1.40271639780637,1.51767689098217,1.03327103585722,1.56998727841375,0.740382983530803,0.889357881261447,3.17005700860579,2.35870794135844,3.59779379815766,4.86864291332407,2.894125917029,4.32863948028414,2.87696137450811,2.2698931748505,1.09824565275233,0,0.744281895337007,1.5601883655728,0.505157755894224,0.717589654087649,3.85954817090694,2.21703828199926,1.51593129416388,1.14075483509418,1.01847051465113,0.704070744865506,1.34005005953453,1.19021820443007,1.75620283072019,2.20689201748667,1.7717175171902,2.39182152986231,1.47476983244164,2.93564469172023,1.44649058581512,1.50791283939272,0.54390568381871,0,0.551873492609465,31.3073650476194,34.6946592312921,0.491804836130026,1.26235463602186,0.631016438832513,1.56175497718655,2.36965737506079,0.477937595905104,1.33679204449436,2.54768877709949,0.809621403349789,1.75353514746787,2.37172666767914,23.1351347823701,2.55492153374884,1.24645922567079,2.60619134965722,2.3095817216155,0,1.94224508923985,1.209294227859,1.50884063804718,0.590603785761546,1.22974059177571,1.29214146584111,1.45413491791002,1.42598951353889,1.26414703174326,1.05418608574999,1.03135543248187,6.12791290356818,0.900305470156551,1.29358683782755,1.28602221018955,3.01478397191865,2.31879462882692,4.44282355625727,2.13125464380219,1.64270195644597,2.33015277950202,1.32317038832977,1.81374878235628,1.77610869365496,2.0506394475573,1.07435109602823,2.1338316966858,0.874442509889552,30.9660254357551,3.58828849675491,2.06386867963222,1.29636169158798,2.82552685507037,4.10082683163076,2.0590035588587,1.5298058699447,1.95932033253121,1.79659965945751,0,1.89801596148681,2.43983360552218,0.86404272657441,0.836353184057875,1.31017538247707,1.07891477107857,1.48776220305605,0.523511883968059,1.16653475962614,1.86401793926078,14.6560164057889,1.34564891439581,0.827292452285488,2.91676782516071,2.19571699912143,1.18269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| |||
|short_description=p2@Synj1 | |||
}} |
Latest revision as of 20:12, 25 September 2015
Short description: | p2@Synj1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Synj1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | -16bp_to_ENSMUST00000118390_5end |
EntrezGene: | Synj1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 4.44e-11 | 23 |
neuroblast (sensu Vertebrata) | 4.44e-11 | 23 |
neuron | 4.38e-07 | 33 |
neuronal stem cell | 4.38e-07 | 33 |
neuroblast | 4.38e-07 | 33 |
electrically signaling cell | 4.38e-07 | 33 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 2.66e-17 | 54 |
neurectoderm | 1.26e-16 | 64 |
neural plate | 1.26e-16 | 64 |
presumptive neural plate | 1.26e-16 | 64 |
neural tube | 4.72e-16 | 52 |
neural rod | 4.72e-16 | 52 |
future spinal cord | 4.72e-16 | 52 |
neural keel | 4.72e-16 | 52 |
gray matter | 9.21e-15 | 34 |
ecto-epithelium | 4.14e-14 | 73 |
pre-chordal neural plate | 4.23e-14 | 49 |
central nervous system | 7.86e-14 | 73 |
brain | 1.60e-13 | 47 |
future brain | 1.60e-13 | 47 |
nervous system | 3.03e-13 | 75 |
ectoderm-derived structure | 3.04e-13 | 95 |
ectoderm | 3.04e-13 | 95 |
presumptive ectoderm | 3.04e-13 | 95 |
regional part of brain | 5.53e-13 | 46 |
anterior neural tube | 1.66e-12 | 40 |
brain grey matter | 2.72e-12 | 29 |
regional part of telencephalon | 2.72e-12 | 29 |
telencephalon | 2.72e-12 | 29 |
regional part of forebrain | 6.02e-12 | 39 |
forebrain | 6.02e-12 | 39 |
future forebrain | 6.02e-12 | 39 |
structure with developmental contribution from neural crest | 6.62e-10 | 92 |
cerebral cortex | 3.92e-08 | 21 |
cerebral hemisphere | 3.92e-08 | 21 |
pallium | 3.92e-08 | 21 |
occipital lobe | 8.22e-08 | 10 |
visual cortex | 8.22e-08 | 10 |
neocortex | 8.22e-08 | 10 |
regional part of cerebral cortex | 2.92e-07 | 17 |