FFCP PHASE1:Mm9::chr10:13686783..13686814,+: Difference between revisions
From FANTOM5_SSTAR
(Created page with "{{FFCP
|id=chr10:13686783..13686814,+
|short_description=p4@Hivep2
|description=CAGE_peak_4_at_Hivep2_5end
|association_with_transcript=-15bp_to_uc011xak.1_5end
|EntrezGe...") |
No edit summary |
||
(8 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
| | |DHSsupport=NA | ||
| | |DPIdataset=NA | ||
|EntrezGene=15273 | |EntrezGene=15273 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=279 | |||
|TSSclassifier=NA | |||
|UniProt= | |UniProt= | ||
|association_with_transcript=-15bp_to_uc011xak.1_5end | |||
|cluster_id=chr10:13686783..13686814,+ | |||
|description=CAGE_peak_4_at_Hivep2_5end | |||
|id=chr10:13686783..13686814,+ | |||
|ontology_enrichment_celltype=CL:0000393!4.64e-09!39;CL:0000211!4.64e-09!39;CL:0000540!4.39e-08!33;CL:0000047!4.39e-08!33;CL:0000031!4.39e-08!33;CL:0000404!4.39e-08!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000393,4.20e-09,39;CL:0000211,4.20e-09,39;CL:0000540,4.50e-08,33;CL:0000047,4.50e-08,33;CL:0000031,4.50e-08,33;CL:0000404,4.50e-08,33;CL:0000117,6.65e-07,23;CL:0000337,6.65e-07,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002020!8.51e-13!34;UBERON:0000073!8.69e-13!75;UBERON:0001016!8.69e-13!75;UBERON:0001017!1.08e-12!73;UBERON:0005743!1.08e-12!73;UBERON:0002791!1.16e-12!29;UBERON:0003528!1.16e-12!29;UBERON:0001893!1.16e-12!29;UBERON:0000955!1.01e-11!50;UBERON:0006238!1.01e-11!50;UBERON:0002616!3.31e-11!49;UBERON:0003080!3.11e-10!40;UBERON:0001049!3.17e-10!52;UBERON:0005068!3.17e-10!52;UBERON:0006241!3.17e-10!52;UBERON:0007135!3.17e-10!52;UBERON:0002780!5.37e-10!39;UBERON:0001890!5.37e-10!39;UBERON:0006240!5.37e-10!39;UBERON:0000956!1.25e-09!21;UBERON:0001869!1.25e-09!21;UBERON:0000203!1.25e-09!21;UBERON:0004121!5.57e-09!102;UBERON:0000924!5.57e-09!102;UBERON:0006601!5.57e-09!102;UBERON:0000477!9.61e-08!154;UBERON:0002619!1.69e-07!17;UBERON:0000033!1.87e-07!63;UBERON:0007811!2.08e-07!86;UBERON:0002021!2.54e-07!10;UBERON:0000411!2.54e-07!10;UBERON:0001950!2.54e-07!10;UBERON:0002346!5.26e-07!71;UBERON:0003075!5.26e-07!71;UBERON:0007284!5.26e-07!71 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,9.29e-14,73;UBERON:0001016,1.22e-13,75;UBERON:0003528,4.23e-13,29;UBERON:0002791,4.23e-13,29;UBERON:0001893,4.23e-13,29;UBERON:0002020,9.79e-13,34;UBERON:0000073,1.58e-12,54;UBERON:0000955,2.59e-11,47;UBERON:0006238,2.59e-11,47;UBERON:0001049,7.49e-11,52;UBERON:0005068,7.49e-11,52;UBERON:0006241,7.49e-11,52;UBERON:0007135,7.49e-11,52;UBERON:0002616,9.59e-11,46;UBERON:0003080,1.47e-10,40;UBERON:0002780,2.75e-10,39;UBERON:0001890,2.75e-10,39;UBERON:0006240,2.75e-10,39;UBERON:0000956,1.33e-09,21;UBERON:0001869,1.33e-09,21;UBERON:0000203,1.33e-09,21;UBERON:0004121,2.07e-09,95;UBERON:0000924,2.07e-09,95;UBERON:0006601,2.07e-09,95;UBERON:0002021,3.00e-08,10;UBERON:0000411,3.00e-08,10;UBERON:0001950,3.00e-08,10;UBERON:0002346,2.27e-07,64;UBERON:0003075,2.27e-07,64;UBERON:0007284,2.27e-07,64;UBERON:0002619,3.32e-07,17 | |||
|phase1_expression=0.640595388419176,1.74487703819681,1.36499771816861,0.90739263392049,1.00179145989269,1.51091344720701,1.16806320297763,11.6210991097419,0.985521055061667,19.4273556847255,1.71217968225505,17.2307863429927,3.76641605848653,8.47977903464275,1.33243904726265,0.809901069559304,0,4.25873923233621,4.38766187538364,3.81950686618227,4.67738095830884,0.496454756004426,0.261199789138935,1.43993180514066,0.45881856213434,0,0.430761996159075,0.646413698057667,0.570070258369122,1.00812051903972,1.55211357458713,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,7.80560271448579,7.19776211658553,2.20256102594018,0,0,0.659058548203415,0.972149495371417,0.55994568650145,1.43752564364972,3.85899993932794,3.62681071005672,2.68875039313971,1.02903774414379,0.573066879877513,1.54701627683233,2.02316460859598,0,1.90149421051854,0.338844532069132,0,0,0.988866362566974,0,0,1.15265491596466,4.97710139080693,4.3201900266141,5.46844899513593,0.571301968807607,2.20868540951614,3.79721477566358,3.1629005436018,0.919218786610021,4.40463523997555,6.12899222808901,4.45458946443106,1.45074916503213,1.73826522844578,3.12548022334056,4.4669279840221,3.37657566019008,5.04234217663473,5.00868595305235,2.27794689278565,0.931997229126503,0.757261933331841,2.34271836331035,2.31891590961342,0,0,0,0.649776417447669,0.448026887097336,1.26399978118577,2.55645483867087,0,0.70667914902068,1.26759077799012,1.28326477414318,0,0,0.432982082022428,0.253359865475099,0.505524445014783,2.05530983494308,5.17875767294343,2.3750742250372,0,2.13125834818499,0.922461989024234,1.05505848386836,0.823120949949934,1.75933227861546,1.23597483867187,2.4581890676385,0.884610551949874,0.323533699894818,1.98757366614354,1.93950101254089,0,6.44117753425404,4.81727425670947,0.255457055208591,0.11981512450592,0,0.635351135365324,1.9472783122627,5.94750783664214,2.38743269014442,5.56237824615285,8.95004100656157,2.90903262383384,6.00292673350703,0.916554274652847,1.24406970610093,0.758168275301024,0.631325567659422,0.130120442962704,0,0.360124259610698,0.753524089178575,0.612328492361951,0.2562274405697,0.281105173679186,1.03481348295606,0,0.378212160335639,0.175951124163949,0.43839146485515,0.556094498451196,0.348252166522167,0.61734640922383,0.199034266818493,0,0.51469581422943,0.284163499395593,1.44988040774851,0.938104239924385,0.720248245844059,0.473489471170421,0.787056926989615,0.617068451549513,0.697601834251224,1.07309360559848,0.467061369468678,0.822799249567402,1.64167464079095,1.54030738137126,2.04679982395465,2.41505126820156,2.01309628140558,9.2527577368216,2.05809224758569,0.660837565967596,0.793351699990633,1.06644125267617,0.696710015581316,0.902072229254653,1.00841762311671,0.444756087689741,0.380451252225118,1.42358718463353,0.494096864172033,0.502670417600539,0.795825888164603,0.38992817423824,0,0.432276099749388,0.398282546508734,0,0.799739588268102,0,0.814605311381257,0.387904974335251,0.49095073923223,0.632365371242573,0.738050739898011,0.941992367048249,0.863780147452604,1.1858105083486,0.166845105716094,0,0.224862112384854,0.202860121388503,0.241177159752417,0.763877555344259,0.575392274901621,0.648540907100142,0.274561413188081,1.43768206527355,1.11642284300551,0.936113019343682,3.03094653536534,0.896987067609561,0.964887042726734,2.77129785249907,0.189491411770485,0.651859905768103,1.01847051465113,0.234690248288502,1.67506257441816,0.476087281772027,0.585400943573396,1.41871629695572,1.7717175171902,2.23236676120482,2.78567635016755,1.38147985492716,2.16973587872267,4.52373851817817,3.80733978673097,0,2.48343071674259,1.28440471990234,1.52375192569864,0.163934945376675,0.504941854408746,0.94652465824877,1.17131623288992,2.80050417052639,2.86762557543062,2.89638276307112,2.54768877709949,2.42886421004937,1.16902343164525,2.37172666767914,5.46246237917072,1.41940085208269,0.890328018336276,0.977321756121456,1.97964147567043,1.32745138339963,0.485561272309963,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,0.775284879504663,0,1.06949213515416,2.21225730555071,2.10837217149998,0,1.02131881726136,0.720244376125241,0.517434735131018,1.07168517515796,0.177340233642274,1.42695054081656,0.493647061806363,0.304464949114599,0.23467170806371,1.0591603543191,2.20528398054962,1.81374878235628,0.645857706783622,0.482503399425247,0.835606408021955,1.47726809770555,0.582961673259701,1.11255181206306,1.53783792718067,0.619160603889667,0.925972636848558,0.565105371014073,1.50363650493128,2.74533807847827,1.5298058699447,1.25956307091292,0.690999869022119,0,0,0.203319467126849,0.972048067396211,0,1.09181281873089,0.404593039154462,1.32245529160537,1.04702376793612,0.90730481304255,1.24267862617385,0,0.897099276263873,0.330916980914195,0.388902376688095,0.387479470433193,0.337912250981556,0.469428954583016,1.0416350787516,0.314578033277133,0,0.288030006257865,2.21207784439725,0.405450430580328,0.102710957164827,0.649604114888975,0.716106782669926,0.39736270956253,1.20195449519969,1.03382669022204,0.807731599585181,1.143102099825,0.705783295957884,0.974578807397524,2.40529604100824,2.57129184799452,0.680191150845634,0.221985953374065,0,0.167884616364078,1.73870634628971,0.563047426353546,0.549454872801795,0.214368379079066,1.00314420807073,5.64751842617067,5.9842280745933,6.87474616127276,5.84300819968538,5.48066015816514,7.55393897389701,6.75022500231806,7.20513925158753,4.53142408984205,3.62432218226274,0.207574695168353,0.399024873401031,1.36586884603307,0.972426868273176,0.209613162627982,0.919217542250071,1.77797382241292,1.23621034343337,0.64183841918363,1.51618327058278,1.01391719956096,1.69763707247469,1.12369808963859,1.40855335290712,1.09127391015665,1.90517476513229,1.0429589335037,1.92909220463705,1.23625770240992,1.47198920134397,1.02860775715625,1.77475806159337,1.1921809497366,2.18019624948493,1.41164070622996,1.60767754994185,1.82927972872773,1.31534855718921,1.49384525230448,1.12228454331548,1.77952527186261,1.57607171800902,2.45538625901814,2.32405261778949,0.578719832943424,0.999242311751784,0.935726433781634,0.429742108096597,0.765153328275374,2.42650561031467,1.62307484934295 | |phase1_expression=0.640595388419176,1.74487703819681,1.36499771816861,0.90739263392049,1.00179145989269,1.51091344720701,1.16806320297763,11.6210991097419,0.985521055061667,19.4273556847255,1.71217968225505,17.2307863429927,3.76641605848653,8.47977903464275,1.33243904726265,0.809901069559304,0,4.25873923233621,4.38766187538364,3.81950686618227,4.67738095830884,0.496454756004426,0.261199789138935,1.43993180514066,0.45881856213434,0,0.430761996159075,0.646413698057667,0.570070258369122,1.00812051903972,1.55211357458713,0,0,0,0,0.166234645358492,0,0,0,0,0,0,0,7.80560271448579,7.19776211658553,2.20256102594018,0,0,0.659058548203415,0.972149495371417,0.55994568650145,1.43752564364972,3.85899993932794,3.62681071005672,2.68875039313971,1.02903774414379,0.573066879877513,1.54701627683233,2.02316460859598,0,1.90149421051854,0.338844532069132,0,0,0.988866362566974,0,0,1.15265491596466,4.97710139080693,4.3201900266141,5.46844899513593,0.571301968807607,2.20868540951614,3.79721477566358,3.1629005436018,0.919218786610021,4.40463523997555,6.12899222808901,4.45458946443106,1.45074916503213,1.73826522844578,3.12548022334056,4.4669279840221,3.37657566019008,5.04234217663473,5.00868595305235,2.27794689278565,0.931997229126503,0.757261933331841,2.34271836331035,2.31891590961342,0,0,0,0.649776417447669,0.448026887097336,1.26399978118577,2.55645483867087,0,0.70667914902068,1.26759077799012,1.28326477414318,0,0,0.432982082022428,0.253359865475099,0.505524445014783,2.05530983494308,5.17875767294343,2.3750742250372,0,2.13125834818499,0.922461989024234,1.05505848386836,0.823120949949934,1.75933227861546,1.23597483867187,2.4581890676385,0.884610551949874,0.323533699894818,1.98757366614354,1.93950101254089,0,6.44117753425404,4.81727425670947,0.255457055208591,0.11981512450592,0,0.635351135365324,1.9472783122627,5.94750783664214,2.38743269014442,5.56237824615285,8.95004100656157,2.90903262383384,6.00292673350703,0.916554274652847,1.24406970610093,0.758168275301024,0.631325567659422,0.130120442962704,0,0.360124259610698,0.753524089178575,0.612328492361951,0.2562274405697,0.281105173679186,1.03481348295606,0,0.378212160335639,0.175951124163949,0.43839146485515,0.556094498451196,0.348252166522167,0.61734640922383,0.199034266818493,0,0.51469581422943,0.284163499395593,1.44988040774851,0.938104239924385,0.720248245844059,0.473489471170421,0.787056926989615,0.617068451549513,0.697601834251224,1.07309360559848,0.467061369468678,0.822799249567402,1.64167464079095,1.54030738137126,2.04679982395465,2.41505126820156,2.01309628140558,9.2527577368216,2.05809224758569,0.660837565967596,0.793351699990633,1.06644125267617,0.696710015581316,0.902072229254653,1.00841762311671,0.444756087689741,0.380451252225118,1.42358718463353,0.494096864172033,0.502670417600539,0.795825888164603,0.38992817423824,0,0.432276099749388,0.398282546508734,0,0.799739588268102,0,0.814605311381257,0.387904974335251,0.49095073923223,0.632365371242573,0.738050739898011,0.941992367048249,0.863780147452604,1.1858105083486,0.166845105716094,0,0.224862112384854,0.202860121388503,0.241177159752417,0.763877555344259,0.575392274901621,0.648540907100142,0.274561413188081,1.43768206527355,1.11642284300551,0.936113019343682,3.03094653536534,0.896987067609561,0.964887042726734,2.77129785249907,0.189491411770485,0.651859905768103,1.01847051465113,0.234690248288502,1.67506257441816,0.476087281772027,0.585400943573396,1.41871629695572,1.7717175171902,2.23236676120482,2.78567635016755,1.38147985492716,2.16973587872267,4.52373851817817,3.80733978673097,0,2.48343071674259,1.28440471990234,1.52375192569864,0.163934945376675,0.504941854408746,0.94652465824877,1.17131623288992,2.80050417052639,2.86762557543062,2.89638276307112,2.54768877709949,2.42886421004937,1.16902343164525,2.37172666767914,5.46246237917072,1.41940085208269,0.890328018336276,0.977321756121456,1.97964147567043,1.32745138339963,0.485561272309963,0.302323556964751,0.377210159511796,0.295301892880773,0.922305443831782,0.775284879504663,0,1.06949213515416,2.21225730555071,2.10837217149998,0,1.02131881726136,0.720244376125241,0.517434735131018,1.07168517515796,0.177340233642274,1.42695054081656,0.493647061806363,0.304464949114599,0.23467170806371,1.0591603543191,2.20528398054962,1.81374878235628,0.645857706783622,0.482503399425247,0.835606408021955,1.47726809770555,0.582961673259701,1.11255181206306,1.53783792718067,0.619160603889667,0.925972636848558,0.565105371014073,1.50363650493128,2.74533807847827,1.5298058699447,1.25956307091292,0.690999869022119,0,0,0.203319467126849,0.972048067396211,0,1.09181281873089,0.404593039154462,1.32245529160537,1.04702376793612,0.90730481304255,1.24267862617385,0,0.897099276263873,0.330916980914195,0.388902376688095,0.387479470433193,0.337912250981556,0.469428954583016,1.0416350787516,0.314578033277133,0,0.288030006257865,2.21207784439725,0.405450430580328,0.102710957164827,0.649604114888975,0.716106782669926,0.39736270956253,1.20195449519969,1.03382669022204,0.807731599585181,1.143102099825,0.705783295957884,0.974578807397524,2.40529604100824,2.57129184799452,0.680191150845634,0.221985953374065,0,0.167884616364078,1.73870634628971,0.563047426353546,0.549454872801795,0.214368379079066,1.00314420807073,5.64751842617067,5.9842280745933,6.87474616127276,5.84300819968538,5.48066015816514,7.55393897389701,6.75022500231806,7.20513925158753,4.53142408984205,3.62432218226274,0.207574695168353,0.399024873401031,1.36586884603307,0.972426868273176,0.209613162627982,0.919217542250071,1.77797382241292,1.23621034343337,0.64183841918363,1.51618327058278,1.01391719956096,1.69763707247469,1.12369808963859,1.40855335290712,1.09127391015665,1.90517476513229,1.0429589335037,1.92909220463705,1.23625770240992,1.47198920134397,1.02860775715625,1.77475806159337,1.1921809497366,2.18019624948493,1.41164070622996,1.60767754994185,1.82927972872773,1.31534855718921,1.49384525230448,1.12228454331548,1.77952527186261,1.57607171800902,2.45538625901814,2.32405261778949,0.578719832943424,0.999242311751784,0.935726433781634,0.429742108096597,0.765153328275374,2.42650561031467,1.62307484934295 | ||
|short_description=p4@Hivep2 | |||
}} | }} |
Latest revision as of 19:54, 25 September 2015
Short description: | p4@Hivep2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Hivep2_5end |
Coexpression cluster: | MCL_coexpression_mm9:279 |
Association with transcript: | -15bp_to_uc011xak.1_5end |
EntrezGene: | Hivep2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
electrically responsive cell | 4.20e-09 | 39 |
electrically active cell | 4.20e-09 | 39 |
neuron | 4.50e-08 | 33 |
neuronal stem cell | 4.50e-08 | 33 |
neuroblast | 4.50e-08 | 33 |
electrically signaling cell | 4.50e-08 | 33 |
CNS neuron (sensu Vertebrata) | 6.65e-07 | 23 |
neuroblast (sensu Vertebrata) | 6.65e-07 | 23 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 9.29e-14 | 73 |
nervous system | 1.22e-13 | 75 |
brain grey matter | 4.23e-13 | 29 |
regional part of telencephalon | 4.23e-13 | 29 |
telencephalon | 4.23e-13 | 29 |
gray matter | 9.79e-13 | 34 |
regional part of nervous system | 1.58e-12 | 54 |
brain | 2.59e-11 | 47 |
future brain | 2.59e-11 | 47 |
neural tube | 7.49e-11 | 52 |
neural rod | 7.49e-11 | 52 |
future spinal cord | 7.49e-11 | 52 |
neural keel | 7.49e-11 | 52 |
regional part of brain | 9.59e-11 | 46 |
anterior neural tube | 1.47e-10 | 40 |
regional part of forebrain | 2.75e-10 | 39 |
forebrain | 2.75e-10 | 39 |
future forebrain | 2.75e-10 | 39 |
cerebral cortex | 1.33e-09 | 21 |
cerebral hemisphere | 1.33e-09 | 21 |
pallium | 1.33e-09 | 21 |
ectoderm-derived structure | 2.07e-09 | 95 |
ectoderm | 2.07e-09 | 95 |
presumptive ectoderm | 2.07e-09 | 95 |
occipital lobe | 3.00e-08 | 10 |
visual cortex | 3.00e-08 | 10 |
neocortex | 3.00e-08 | 10 |
neurectoderm | 2.27e-07 | 64 |
neural plate | 2.27e-07 | 64 |
presumptive neural plate | 2.27e-07 | 64 |
regional part of cerebral cortex | 3.32e-07 | 17 |