FFCP PHASE1:Mm9::chr14:24823340..24823366,-: Difference between revisions
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{{FFCP|EntrezGene=16531|HGNC=|MCL_coexpression_id=1130|UniProt=Q08460,C3VLD3|association_with_transcript=60bp_to_NM_001253358,NM_001253359,NM_001253360,NM_001253361,NM_001253362,NM_001253363,NM_001253364,NM_001253365,NM_001253366,NM_001253367,NM_001253368,NM_001253369,NM_001253370,NM_001253371,NM_001253372,NM_001253373,NM_001253374,NM_001253375,NM_001253376,NM_001253377,NM_001253378,NM_010610,uc007sme.2,uc007smg.1,uc007smh.1,uc007smi.1,uc011zgw.1,uc011zgx.1,uc011zgy.1,uc011zgz.1,uc011zha.1,uc011zhc.1,uc011zhd.1,uc011zhe.1,uc011zhf.1,uc011zhg.1,uc011zhh.1,uc011zhi.1,uc011zhj.1,uc011zhk.1_5end|description=CAGE_peak_3_at_Kcnma1_5end|id=chr14:24823340..24823366,-|ontology_enrichment_celltype=|ontology_enrichment_celltype_v019_2=|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0002346!5.21e-11!71;UBERON:0003075!5.21e-11!71;UBERON:0007284!5.21e-11!71;UBERON:0004121!1.20e-09!102;UBERON:0000924!1.20e-09!102;UBERON:0006601!1.20e-09!102;UBERON:0000033!2.45e-09!63;UBERON:0002021!2.91e-08!10;UBERON:0000411!2.91e-08!10;UBERON:0001950!2.91e-08!10;UBERON:0000955!3.36e-08!50;UBERON:0006238!3.36e-08!50;UBERON:0001017!4.88e-08!73;UBERON:0005743!4.88e-08!73;UBERON:0001049!5.98e-08!52;UBERON:0005068!5.98e-08!52;UBERON:0006241!5.98e-08!52;UBERON:0007135!5.98e-08!52;UBERON:0002616!1.11e-07!49;UBERON:0000073!1.45e-07!75;UBERON:0001016!1.45e-07!75;UBERON:0003056!4.07e-07!49|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.52e-10,10;UBERON:0000411,2.52e-10,10;UBERON:0001950,2.52e-10,10;UBERON:0000073,1.83e-09,54;UBERON:0002346,5.12e-09,64;UBERON:0003075,5.12e-09,64;UBERON:0007284,5.12e-09,64;UBERON:0001049,1.19e-08,52;UBERON:0005068,1.19e-08,52;UBERON:0006241,1.19e-08,52;UBERON:0007135,1.19e-08,52;UBERON:0000955,3.60e-08,47;UBERON:0006238,3.60e-08,47;UBERON:0002020,7.18e-08,34;UBERON:0007023,1.34e-07,51;UBERON:0002616,1.50e-07,46;UBERON:0003056,2.77e-07,49;UBERON:0003528,3.18e-07,29;UBERON:0002791,3.18e-07,29;UBERON:0001893,3.18e-07,29;UBERON:0001017,7.72e-07,73|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38121212422995,0,0,0,0,0,0,0.215471232685889,0.760093677825496,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.606949382578793,1.5869729378161,1.90149421051854,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,1.14260393761521,0.662605622854841,0.244981598429908,0.0958454710182364,0,1.10115880999389,4.34136949489638,3.5329502648936,1.05509030184155,1.09785172322892,1.56274011167028,1.11673199600552,1.68828783009504,3.51435969886663,1.47314292736834,2.42031857358475,1.3047961207771,0,0.302286240427142,0.869593466105033,0,0,0,0,0,1.68533304158102,0,0,0,0,0,0,0,0,0,0,1.59857431606684,0.776813650941515,16.6255195752604,0.173485326766136,2.43572382649713,0.922461989024234,1.95939432718409,2.70454026412121,5.27799683584637,0,2.60278842455841,0,2.10296904931632,3.75430581382669,2.90925151881133,1.86391761218122,6.14839673724249,7.54008144528438,1.02182822083437,0.11981512450592,0,0,3.14560342750128,10.980014467647,1.13088916901578,12.6891753740362,15.8543583544805,4.77912502486988,9.73447578406546,1.01839363850316,5.22509276562391,2.27450482590307,12.2056276414155,0,0.229902104433473,0.540186389416048,1.20563854268572,1.15662048557257,1.15302348256365,1.3118241438362,4.9153640440413,0,0.378212160335639,0.879755620819744,0.219195732427575,0.278047249225598,2.089512999133,0.823128545631774,0.59710280045548,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,13.4585567081041,0.308713837137853,0.330418782983798,0.793351699990633,0,0.232236671860439,1.54640953586512,2.01683524623343,0.667134131534611,2.09248188723815,0.949058123089023,0.658795818896044,1.25667604400135,1.39269530428806,2.14460495831032,0.898819408654221,1.94524244887225,0.796565093017469,0,0.342745537829186,0,0.407302655690628,0.387904974335251,0.280543279561274,0.379419222745544,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0,0,0,0.339490171550376,0,0,0.238043640886014,0.390267295715598,0.472905432318573,0.44292937929755,0.478364305972461,0.655453258862952,0.172684981865896,0.144649058581512,0,0,0.983528546038072,0.275936746304732,1.60550589987792,2.10981035865966,0,7.82659874333556,0.631016438832513,0.390438744296638,1.29254038639679,0.238968797952552,0.445597348164788,0.283076530788832,0.404810701674894,0.292255857911312,0.790575555893047,17.0300297703558,3.54850213020672,0.178065603667255,0.81443479676788,2.3095817216155,0,0.242780636154981,0,0.188605079755898,0.295301892880773,0.614870295887855,1.03371317267288,0.363533729477506,0.712994756769443,1.26414703174326,0,1.03135543248187,5.7874732978144,0,0.129358683782755,0.428674070063185,0.532020700926821,0,0.822745103010605,0.608929898229199,0,0,2.8668691747145,0.65954501176592,0,0.482503399425247,0.119372344003136,0,1.1659233465194,2.03967832211561,0,0,0,0,0,0,0,0,0,2.86401185404534,0.158167996790568,1.62655573701479,3.34816556547584,4.59994251231831,2.83871332870031,5.25970950900801,6.94289028092822,4.97336289769656,1.42576470620972,9.94142900939081,0,0.299033092087958,0.496375471371293,1.36115831840833,1.03327858782185,1.01373675294467,0.469428954583016,1.0416350787516,0.524296722128554,0.724752362478018,0.288030006257865,0.316011120628178,0,0.102710957164827,0.129920822977795,0.358053391334963,0.39736270956253,0.360586348559907,0.443068581523732,0.403865799792591,0.15241361331,0.302478555410522,0.0974578807397524,0.192423683280659,0.467507608726276,3.85441652145859,0,0,0,7.34120457322324,2.62755465631655,1.46521299413812,2.78678892802786,2.00628841614145,7.34177395402186,10.1271552031579,12.6037012956667,9.10821866421544,15.7568979547248,7.55393897389701,20.2506750069542,18.0128481289688,19.4851235863208,19.6748918465692,0,0.399024873401031,0.341467211508268,0.972426868273176,0,0.183843508450014,1.33348036680969,0.824140228955577,2.88827288632634,2.02157769411038,1.52087579934144,1.50901073108861,1.21733959710847,1.47257850531199,1.60819313075717,3.33405583898152,2.0859178670074,2.50781986602817,1.23625770240992,1.17759136107518,2.05721551431249,1.59728225543404,1.43061713968393,1.30811774969096,1.12931256498397,1.26921911837515,1.64635175585495,1.31534855718921,1.7654534799962,1.68342681497322,1.66089025373844,1.28055827088233,1.22769312950907,1.54936841185966,1.54325288784913,2.24829520144151,1.87145286756327,2.14871054048298,3.25190164517034,2.42650561031467,1.85494268496337|short_description=p3@Kcnma1}} | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=16531 | |||
|HGNC= | |||
|MCL_coexpression_id=1130 | |||
|TSSclassifier=NA | |||
|UniProt=Q08460,C3VLD3 | |||
|association_with_transcript=60bp_to_NM_001253358,NM_001253359,NM_001253360,NM_001253361,NM_001253362,NM_001253363,NM_001253364,NM_001253365,NM_001253366,NM_001253367,NM_001253368,NM_001253369,NM_001253370,NM_001253371,NM_001253372,NM_001253373,NM_001253374,NM_001253375,NM_001253376,NM_001253377,NM_001253378,NM_010610,uc007sme.2,uc007smg.1,uc007smh.1,uc007smi.1,uc011zgw.1,uc011zgx.1,uc011zgy.1,uc011zgz.1,uc011zha.1,uc011zhc.1,uc011zhd.1,uc011zhe.1,uc011zhf.1,uc011zhg.1,uc011zhh.1,uc011zhi.1,uc011zhj.1,uc011zhk.1_5end | |||
|cluster_id=chr14:24823340..24823366,- | |||
|description=CAGE_peak_3_at_Kcnma1_5end | |||
|id=chr14:24823340..24823366,- | |||
|ontology_enrichment_celltype= | |||
|ontology_enrichment_celltype_v019_2= | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0002346!5.21e-11!71;UBERON:0003075!5.21e-11!71;UBERON:0007284!5.21e-11!71;UBERON:0004121!1.20e-09!102;UBERON:0000924!1.20e-09!102;UBERON:0006601!1.20e-09!102;UBERON:0000033!2.45e-09!63;UBERON:0002021!2.91e-08!10;UBERON:0000411!2.91e-08!10;UBERON:0001950!2.91e-08!10;UBERON:0000955!3.36e-08!50;UBERON:0006238!3.36e-08!50;UBERON:0001017!4.88e-08!73;UBERON:0005743!4.88e-08!73;UBERON:0001049!5.98e-08!52;UBERON:0005068!5.98e-08!52;UBERON:0006241!5.98e-08!52;UBERON:0007135!5.98e-08!52;UBERON:0002616!1.11e-07!49;UBERON:0000073!1.45e-07!75;UBERON:0001016!1.45e-07!75;UBERON:0003056!4.07e-07!49 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002021,2.52e-10,10;UBERON:0000411,2.52e-10,10;UBERON:0001950,2.52e-10,10;UBERON:0000073,1.83e-09,54;UBERON:0002346,5.12e-09,64;UBERON:0003075,5.12e-09,64;UBERON:0007284,5.12e-09,64;UBERON:0001049,1.19e-08,52;UBERON:0005068,1.19e-08,52;UBERON:0006241,1.19e-08,52;UBERON:0007135,1.19e-08,52;UBERON:0000955,3.60e-08,47;UBERON:0006238,3.60e-08,47;UBERON:0002020,7.18e-08,34;UBERON:0007023,1.34e-07,51;UBERON:0002616,1.50e-07,46;UBERON:0003056,2.77e-07,49;UBERON:0003528,3.18e-07,29;UBERON:0002791,3.18e-07,29;UBERON:0001893,3.18e-07,29;UBERON:0001017,7.72e-07,73 | |||
|phase1_expression=0.160148847104794,0,0,0,0,0.16787927191189,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,2.38121212422995,0,0,0,0,0,0,0.215471232685889,0.760093677825496,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.183546752161682,0,0,0,0,0.139986421625363,0,0,0,0,0,0,0,0.606949382578793,1.5869729378161,1.90149421051854,0,0,0,0,0,0,0,0.103689612308478,0.135005938331691,0,1.14260393761521,0.662605622854841,0.244981598429908,0.0958454710182364,0,1.10115880999389,4.34136949489638,3.5329502648936,1.05509030184155,1.09785172322892,1.56274011167028,1.11673199600552,1.68828783009504,3.51435969886663,1.47314292736834,2.42031857358475,1.3047961207771,0,0.302286240427142,0.869593466105033,0,0,0,0,0,1.68533304158102,0,0,0,0,0,0,0,0,0,0,1.59857431606684,0.776813650941515,16.6255195752604,0.173485326766136,2.43572382649713,0.922461989024234,1.95939432718409,2.70454026412121,5.27799683584637,0,2.60278842455841,0,2.10296904931632,3.75430581382669,2.90925151881133,1.86391761218122,6.14839673724249,7.54008144528438,1.02182822083437,0.11981512450592,0,0,3.14560342750128,10.980014467647,1.13088916901578,12.6891753740362,15.8543583544805,4.77912502486988,9.73447578406546,1.01839363850316,5.22509276562391,2.27450482590307,12.2056276414155,0,0.229902104433473,0.540186389416048,1.20563854268572,1.15662048557257,1.15302348256365,1.3118241438362,4.9153640440413,0,0.378212160335639,0.879755620819744,0.219195732427575,0.278047249225598,2.089512999133,0.823128545631774,0.59710280045548,0,0,0,0,0.469052119962192,0,0,0,0,0,0,0,0,0,0,0,0,0.134206418760372,13.4585567081041,0.308713837137853,0.330418782983798,0.793351699990633,0,0.232236671860439,1.54640953586512,2.01683524623343,0.667134131534611,2.09248188723815,0.949058123089023,0.658795818896044,1.25667604400135,1.39269530428806,2.14460495831032,0.898819408654221,1.94524244887225,0.796565093017469,0,0.342745537829186,0,0.407302655690628,0.387904974335251,0.280543279561274,0.379419222745544,0,0,0,0,0,0.196558995113203,0,0,0,0,0,0,0,0,0,0.312037673114561,0,0,0,0,0,0,0.339490171550376,0,0,0.238043640886014,0.390267295715598,0.472905432318573,0.44292937929755,0.478364305972461,0.655453258862952,0.172684981865896,0.144649058581512,0,0,0.983528546038072,0.275936746304732,1.60550589987792,2.10981035865966,0,7.82659874333556,0.631016438832513,0.390438744296638,1.29254038639679,0.238968797952552,0.445597348164788,0.283076530788832,0.404810701674894,0.292255857911312,0.790575555893047,17.0300297703558,3.54850213020672,0.178065603667255,0.81443479676788,2.3095817216155,0,0.242780636154981,0,0.188605079755898,0.295301892880773,0.614870295887855,1.03371317267288,0.363533729477506,0.712994756769443,1.26414703174326,0,1.03135543248187,5.7874732978144,0,0.129358683782755,0.428674070063185,0.532020700926821,0,0.822745103010605,0.608929898229199,0,0,2.8668691747145,0.65954501176592,0,0.482503399425247,0.119372344003136,0,1.1659233465194,2.03967832211561,0,0,0,0,0,0,0,0,0,2.86401185404534,0.158167996790568,1.62655573701479,3.34816556547584,4.59994251231831,2.83871332870031,5.25970950900801,6.94289028092822,4.97336289769656,1.42576470620972,9.94142900939081,0,0.299033092087958,0.496375471371293,1.36115831840833,1.03327858782185,1.01373675294467,0.469428954583016,1.0416350787516,0.524296722128554,0.724752362478018,0.288030006257865,0.316011120628178,0,0.102710957164827,0.129920822977795,0.358053391334963,0.39736270956253,0.360586348559907,0.443068581523732,0.403865799792591,0.15241361331,0.302478555410522,0.0974578807397524,0.192423683280659,0.467507608726276,3.85441652145859,0,0,0,7.34120457322324,2.62755465631655,1.46521299413812,2.78678892802786,2.00628841614145,7.34177395402186,10.1271552031579,12.6037012956667,9.10821866421544,15.7568979547248,7.55393897389701,20.2506750069542,18.0128481289688,19.4851235863208,19.6748918465692,0,0.399024873401031,0.341467211508268,0.972426868273176,0,0.183843508450014,1.33348036680969,0.824140228955577,2.88827288632634,2.02157769411038,1.52087579934144,1.50901073108861,1.21733959710847,1.47257850531199,1.60819313075717,3.33405583898152,2.0859178670074,2.50781986602817,1.23625770240992,1.17759136107518,2.05721551431249,1.59728225543404,1.43061713968393,1.30811774969096,1.12931256498397,1.26921911837515,1.64635175585495,1.31534855718921,1.7654534799962,1.68342681497322,1.66089025373844,1.28055827088233,1.22769312950907,1.54936841185966,1.54325288784913,2.24829520144151,1.87145286756327,2.14871054048298,3.25190164517034,2.42650561031467,1.85494268496337 | |||
|short_description=p3@Kcnma1 | |||
}} |
Latest revision as of 19:32, 25 September 2015
Short description: | p3@Kcnma1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_3_at_Kcnma1_5end |
Coexpression cluster: | MCL_coexpression_mm9:1130 |
Association with transcript: | 60bp_to_NM_001253358, NM_001253359, NM_001253360, NM_001253361, NM_001253362, NM_001253363, NM_001253364, NM_001253365, NM_001253366, NM_001253367, NM_001253368, NM_001253369, NM_001253370, NM_001253371, NM_001253372, NM_001253373, NM_001253374, NM_001253375, NM_001253376, NM_001253377, NM_001253378, NM_010610, uc007sme.2, uc007smg.1, uc007smh.1, uc007smi.1, uc011zgw.1, uc011zgx.1, uc011zgy.1, uc011zgz.1, uc011zha.1, uc011zhc.1, uc011zhd.1, uc011zhe.1, uc011zhf.1, uc011zhg.1, uc011zhh.1, uc011zhi.1, uc011zhj.1, uc011zhk.1_5end |
EntrezGene: | Kcnma1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
occipital lobe | 2.52e-10 | 10 |
visual cortex | 2.52e-10 | 10 |
neocortex | 2.52e-10 | 10 |
regional part of nervous system | 1.83e-09 | 54 |
neurectoderm | 5.12e-09 | 64 |
neural plate | 5.12e-09 | 64 |
presumptive neural plate | 5.12e-09 | 64 |
neural tube | 1.19e-08 | 52 |
neural rod | 1.19e-08 | 52 |
future spinal cord | 1.19e-08 | 52 |
neural keel | 1.19e-08 | 52 |
brain | 3.60e-08 | 47 |
future brain | 3.60e-08 | 47 |
gray matter | 7.18e-08 | 34 |
adult organism | 1.34e-07 | 51 |
regional part of brain | 1.50e-07 | 46 |
pre-chordal neural plate | 2.77e-07 | 49 |
brain grey matter | 3.18e-07 | 29 |
regional part of telencephalon | 3.18e-07 | 29 |
telencephalon | 3.18e-07 | 29 |
central nervous system | 7.72e-07 | 73 |