FFCP PHASE2:Mm9::chr5:15440524..15440537,+: Difference between revisions
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|DHSsupport=NA | |DHSsupport=NA | ||
|DPIdataset=NA | |DPIdataset=NA | ||
|EntrezGene= | |EntrezGene=12293 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1167 | |MCL_coexpression_id=1167 | ||
|TSSclassifier=NA | |TSSclassifier=NA | ||
|UniProt= | |UniProt=O08532,E9Q1X8,Q14BH8,Q8C6Y3 | ||
|association_with_transcript=15bp_to_ENSMUST00000039370,ENSMUST00000078272,ENSMUST00000101581,ENSMUST00000167946,NM_001110843,NM_001110844,NM_001110845,NM_001110846,NM_009784,uc008wmw.2,uc008wmx.2,uc008wmy.2,uc008wmz.2,uc008wna.2,uc008wnb.2_5end | |association_with_transcript=15bp_to_ENSMUST00000039370,ENSMUST00000078272,ENSMUST00000101581,ENSMUST00000167946,NM_001110843,NM_001110844,NM_001110845,NM_001110846,NM_009784,uc008wmw.2,uc008wmx.2,uc008wmy.2,uc008wmz.2,uc008wna.2,uc008wnb.2_5end | ||
|cluster_id=chr5:15440524..15440537,+ | |cluster_id=chr5:15440524..15440537,+ | ||
Latest revision as of 19:20, 25 September 2015
| Short description: | p4@Cacna2d1 |
|---|---|
| Species: | Mouse (Mus musculus) |
| DPI dataset: | NA |
| TSS-like-by-RIKEN-classifier(Yes/No): | NA |
| DHS support(Yes/No): | NA |
| Description: | CAGE_peak_4_at_Cacna2d1_5end |
| Coexpression cluster: | MCL_coexpression_mm9:1167 |
| Association with transcript: | 15bp_to_ENSMUST00000039370, ENSMUST00000078272, ENSMUST00000101581, ENSMUST00000167946, NM_001110843, NM_001110844, NM_001110845, NM_001110846, NM_009784, uc008wmw.2, uc008wmx.2, uc008wmy.2, uc008wmz.2, uc008wna.2, uc008wnb.2_5end |
| EntrezGene: | Cacna2d1 |
| Link to Zenbu: | ZENBU |
View on UCSC genome browser
Mouse over to see Genome browser image, Click image to go to Genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
| Ontology term | p-value | n |
|---|---|---|
| neuron | 4.40e-09 | 33 |
| neuronal stem cell | 4.40e-09 | 33 |
| neuroblast | 4.40e-09 | 33 |
| electrically signaling cell | 4.40e-09 | 33 |
| CNS neuron (sensu Vertebrata) | 1.66e-08 | 23 |
| neuroblast (sensu Vertebrata) | 1.66e-08 | 23 |
| electrically responsive cell | 7.87e-08 | 39 |
| electrically active cell | 7.87e-08 | 39 |
| Ontology term | p-value | n |
|---|---|---|
| structure with developmental contribution from neural crest | 1.70e-19 | 92 |
| central nervous system | 3.94e-17 | 73 |
| nervous system | 8.67e-17 | 75 |
| regional part of nervous system | 2.26e-16 | 54 |
| neural tube | 1.49e-14 | 52 |
| neural rod | 1.49e-14 | 52 |
| future spinal cord | 1.49e-14 | 52 |
| neural keel | 1.49e-14 | 52 |
| neurectoderm | 4.12e-14 | 64 |
| neural plate | 4.12e-14 | 64 |
| presumptive neural plate | 4.12e-14 | 64 |
| ectoderm-derived structure | 6.38e-14 | 95 |
| ectoderm | 6.38e-14 | 95 |
| presumptive ectoderm | 6.38e-14 | 95 |
| gray matter | 9.69e-13 | 34 |
| brain | 3.22e-12 | 47 |
| future brain | 3.22e-12 | 47 |
| regional part of brain | 1.56e-11 | 46 |
| ecto-epithelium | 2.33e-11 | 73 |
| anterior neural tube | 2.65e-11 | 40 |
| pre-chordal neural plate | 5.41e-11 | 49 |
| regional part of forebrain | 1.19e-10 | 39 |
| forebrain | 1.19e-10 | 39 |
| future forebrain | 1.19e-10 | 39 |
| brain grey matter | 1.03e-09 | 29 |
| regional part of telencephalon | 1.03e-09 | 29 |
| telencephalon | 1.03e-09 | 29 |
| occipital lobe | 2.29e-08 | 10 |
| visual cortex | 2.29e-08 | 10 |
| neocortex | 2.29e-08 | 10 |
| tube | 2.72e-08 | 114 |
| cerebral cortex | 4.40e-08 | 21 |
| cerebral hemisphere | 4.40e-08 | 21 |
| pallium | 4.40e-08 | 21 |
| anatomical conduit | 7.66e-08 | 122 |
