FFCP PHASE1:Mm9::chr16:81200992..81201011,+: Difference between revisions
From FANTOM5_SSTAR
No edit summary |
No edit summary |
||
(3 intermediate revisions by the same user not shown) | |||
Line 1: | Line 1: | ||
{{FFCP | {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=17968 | |EntrezGene=17968 | ||
|HGNC= | |HGNC= | ||
|MCL_coexpression_id=1 | |MCL_coexpression_id=1 | ||
|TSSclassifier=NA | |||
|UniProt=O35136,Q71VC5 | |UniProt=O35136,Q71VC5 | ||
|association_with_transcript=50bp_to_ENSMUST00000037785,ENSMUST00000067602,NM_001113208,NM_010954,uc007zta.2,uc007ztb.2_5end | |association_with_transcript=50bp_to_ENSMUST00000037785,ENSMUST00000067602,NM_001113208,NM_010954,uc007zta.2,uc007ztb.2_5end | ||
|cluster_id=chr16:81200992..81201011,+ | |||
|description=CAGE_peak_1_at_Ncam2_5end | |description=CAGE_peak_1_at_Ncam2_5end | ||
|id=chr16:81200992..81201011,+ | |id=chr16:81200992..81201011,+ | ||
|ontology_enrichment_celltype=CL:0000540!1.74e-14!33;CL:0000047!1.74e-14!33;CL:0000031!1.74e-14!33;CL:0000404!1.74e-14!33;CL:0000221!2.84e-12!44;CL:0000133!2.84e-12!44;CL:0002319!8.28e-12!43;CL:0000117!9.12e-12!23;CL:0000337!9.12e-12!23;CL:0000393!1.66e-09!39;CL:0000211!1.66e-09!39;CL:0000055!4.45e-08!50 | |ontology_enrichment_celltype=CL:0000540!1.74e-14!33;CL:0000047!1.74e-14!33;CL:0000031!1.74e-14!33;CL:0000404!1.74e-14!33;CL:0000221!2.84e-12!44;CL:0000133!2.84e-12!44;CL:0002319!8.28e-12!43;CL:0000117!9.12e-12!23;CL:0000337!9.12e-12!23;CL:0000393!1.66e-09!39;CL:0000211!1.66e-09!39;CL:0000055!4.45e-08!50 | ||
|ontology_enrichment_celltype_v019_2=CL:0000540,6.59e-17,33;CL:0000047,6.59e-17,33;CL:0000031,6.59e-17,33;CL:0000404,6.59e-17,33;CL:0000117,1.12e-13,23;CL:0000337,1.12e-13,23;CL:0000221,2.80e-13,44;CL:0000133,2.80e-13,44;CL:0002319,9.69e-13,43;CL:0000393,3.21e-12,39;CL:0000211,3.21e-12,39 | |||
|ontology_enrichment_disease= | |ontology_enrichment_disease= | ||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0004121!1.03e-28!102;UBERON:0000924!1.03e-28!102;UBERON:0006601!1.03e-28!102;UBERON:0001017!1.86e-28!73;UBERON:0005743!1.86e-28!73;UBERON:0000073!3.44e-28!75;UBERON:0001016!3.44e-28!75;UBERON:0002346!4.42e-25!71;UBERON:0003075!4.42e-25!71;UBERON:0007284!4.42e-25!71;UBERON:0000033!1.07e-20!63;UBERON:0001049!2.38e-20!52;UBERON:0005068!2.38e-20!52;UBERON:0006241!2.38e-20!52;UBERON:0007135!2.38e-20!52;UBERON:0000955!6.40e-19!50;UBERON:0006238!6.40e-19!50;UBERON:0002616!2.53e-18!49;UBERON:0003056!4.73e-17!49;UBERON:0002020!8.63e-16!34;UBERON:0003080!4.67e-15!40;UBERON:0002780!1.76e-14!39;UBERON:0001890!1.76e-14!39;UBERON:0006240!1.76e-14!39;UBERON:0002791!1.93e-12!29;UBERON:0003528!1.93e-12!29;UBERON:0001893!1.93e-12!29;UBERON:0007811!5.34e-09!86;UBERON:0000153!1.32e-08!94;UBERON:0000956!4.78e-08!21;UBERON:0001869!4.78e-08!21;UBERON:0000203!4.78e-08!21;UBERON:0002021!5.23e-08!10;UBERON:0000411!5.23e-08!10;UBERON:0001950!5.23e-08!10;UBERON:0002619!2.00e-07!17 | |ontology_enrichment_uberon=UBERON:0004121!1.03e-28!102;UBERON:0000924!1.03e-28!102;UBERON:0006601!1.03e-28!102;UBERON:0001017!1.86e-28!73;UBERON:0005743!1.86e-28!73;UBERON:0000073!3.44e-28!75;UBERON:0001016!3.44e-28!75;UBERON:0002346!4.42e-25!71;UBERON:0003075!4.42e-25!71;UBERON:0007284!4.42e-25!71;UBERON:0000033!1.07e-20!63;UBERON:0001049!2.38e-20!52;UBERON:0005068!2.38e-20!52;UBERON:0006241!2.38e-20!52;UBERON:0007135!2.38e-20!52;UBERON:0000955!6.40e-19!50;UBERON:0006238!6.40e-19!50;UBERON:0002616!2.53e-18!49;UBERON:0003056!4.73e-17!49;UBERON:0002020!8.63e-16!34;UBERON:0003080!4.67e-15!40;UBERON:0002780!1.76e-14!39;UBERON:0001890!1.76e-14!39;UBERON:0006240!1.76e-14!39;UBERON:0002791!1.93e-12!29;UBERON:0003528!1.93e-12!29;UBERON:0001893!1.93e-12!29;UBERON:0007811!5.34e-09!86;UBERON:0000153!1.32e-08!94;UBERON:0000956!4.78e-08!21;UBERON:0001869!4.78e-08!21;UBERON:0000203!4.78e-08!21;UBERON:0002021!5.23e-08!10;UBERON:0000411!5.23e-08!10;UBERON:0001950!5.23e-08!10;UBERON:0002619!2.00e-07!17 | ||
|ontology_enrichment_uberon_v019_2=UBERON:0001017,8.42e-31,73;UBERON:0001016,4.43e-30,75;UBERON:0004121,1.35e-27,95;UBERON:0000924,1.35e-27,95;UBERON:0006601,1.35e-27,95;UBERON:0002346,1.56e-25,64;UBERON:0003075,1.56e-25,64;UBERON:0007284,1.56e-25,64;UBERON:0000073,3.00e-23,54;UBERON:0010371,2.83e-22,73;UBERON:0001049,1.53e-21,52;UBERON:0005068,1.53e-21,52;UBERON:0006241,1.53e-21,52;UBERON:0007135,1.53e-21,52;UBERON:0002020,2.41e-18,34;UBERON:0003056,3.65e-18,49;UBERON:0000955,1.66e-17,47;UBERON:0006238,1.66e-17,47;UBERON:0002616,7.70e-17,46;UBERON:0010314,4.80e-16,92;UBERON:0003080,9.14e-16,40;UBERON:0002780,4.22e-15,39;UBERON:0001890,4.22e-15,39;UBERON:0006240,4.22e-15,39;UBERON:0003528,2.26e-14,29;UBERON:0002791,2.26e-14,29;UBERON:0001893,2.26e-14,29;UBERON:0002021,3.23e-09,10;UBERON:0000411,3.23e-09,10;UBERON:0001950,3.23e-09,10;UBERON:0000956,3.61e-09,21;UBERON:0001869,3.61e-09,21;UBERON:0000203,3.61e-09,21;UBERON:0002619,1.99e-08,17 | |||
|phase1_expression=5.12476310735341,0,0,0,0,0.503637815735669,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,6.88850650223665,4.26951090163807,10.7091913546964,0,0,0,0,0.215471232685889,0.380046838912748,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.219686182734472,0,0.139986421625363,1.43752564364972,0,0,0,0,0,0,15.3760510253294,24.8625760257855,14.5781222806421,0,0.889294796111139,0,0,0,2.69640099466564,3.45796474789399,2.38486108309499,1.4850653216486,1.89292465216244,31.992910253226,29.8172530284678,3.55223317723367,2.20444583341944,2.75765635983006,34.1359231098105,36.5185786923637,42.7026162452357,14.7712642257817,13.9061218275663,13.022834263919,24.0097379141188,38.8306200921859,38.0467636964257,67.4699460734699,60.792707701217,26.0959224155421,0.302904773332736,1.5870027622425,0,0.860423876981386,0,0.539703191637817,0,0.448026887097336,1.68533304158102,0,0,0,10.140726223921,0,0,0,0,0,0,0.79928715803342,0,0.593768556259299,3.29622120855658,4.87144765299426,3.68984795609694,5.87818298155228,5.40908052824242,0.753999547978053,0,0.433798070759735,0,0.647067399789637,0,0,3.72783522436244,8.49064311333487,18.431310199584,0.510914110417183,0,0,0,23.666921025962,14.640019290196,14.3245961408665,26.5951209894183,40.1473268008619,20.778804455956,25.7963608277735,1.01839363850316,0,0,2.10441855886474,2.99277018814219,1.14951052216736,2.52086981727489,3.76762044589288,5.23881043465224,5.76511741281824,5.43470002446427,6.98499100995342,0,0.945530400839096,1.40760899331159,0.657587197282725,1.11218899690239,1.74126083261083,1.23469281844766,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0.134206418760372,15.3511662451813,11.1136981369627,0,0,1.2797295032114,2.55460339046482,2.44848176511977,3.02525286935014,2.00140239460383,3.23383564391351,0.949058123089023,0.823494773620054,1.75934646160189,1.59165177632921,2.14460495831032,0,1.08069024937347,1.39398891278057,0.379335801906163,1.82797620175566,0,0.407302655690628,0,0.49095073923223,0.252946148497029,0,0,0,1.1858105083486,0,0.196558995113203,0,0,0.241177159752417,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0,0.184753190166605,0.37898282354097,0.162964976442026,0.169745085775188,0,0,0.238043640886014,0.195133647857799,0.315270288212382,0.221464689648775,0.159454768657487,0.163863314715738,0,0,0,0,0,0,20.871576698413,27.8963814089444,0,0,3.15508219416257,6.24701990874622,8.40151251157916,1.43381278771531,2.89638276307112,5.37845408498782,3.64329631507405,8.18316402151673,11.0680577825027,23.1351347823701,0.425820255624806,0.534196811001766,1.46598263418218,0,0,0.485561272309963,0.604647113929502,0.377210159511796,0,0.922305443831782,0.516856586336442,0,1.06949213515416,0.316036757935816,0,1.03135543248187,5.44703369206061,0.720244376125241,0.388076051348264,2.7863814554107,7.09360934569094,5.88617098086833,5.75921572107423,0.608929898229199,0,0,1.54369878638473,1.15420377059036,0.484393280087717,0.542816324353403,0.358117032009409,0.328281799490123,0.291480836629851,32.2640025498287,0,0.412773735926445,0,0.188368457004691,0,0,0,0.139951452323658,0.138199973804424,0,1.10717597753397,1.01659733563424,1.94409613479242,2.92723614420256,2.83871332870031,2.15782954215713,2.64491058321075,1.57053565190418,0.777689839750757,0,0,0,0,0,0.129159823477731,0.506868376472335,0,0.13020438484395,0.314578033277133,0.241584120826006,0.288030006257865,0,0.202725215290164,0.205421914329655,0,0.358053391334963,0,0,0.147689527174577,0.100966449948148,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,1.15913756419314,0,0.36630324853453,0,0,36.1441179274923,40.5086208126316,36.6653128601214,35.4017555627996,28.773465830367,37.769694869485,37.1262375127493,28.3702358031259,27.1885445390523,28.9945774581019,0,2.79317411380722,3.41467211508268,4.132814190161,2.72497111416377,2.20612210140017,5.11167473943715,4.32673620201678,3.53011130550997,6.31743029409494,6.33698249725599,7.35642731405697,5.89941497060259,6.97874161213075,7.40917549527411,5.23923060411381,5.79421629724277,7.33055037762079,7.41754621445952,7.35994600671987,4.4573002810104,7.0990322463735,7.39152188836695,5.23247099876383,6.7758753899038,6.34609559187574,3.10977553883713,5.26139422875686,7.74083448921412,2.80571135828869,5.45721083371201,5.1222330835293,4.09231043169689,5.26785260032284,4.05103883060397,6.74488560432454,4.21076895201735,4.72716318906256,4.20834330551455,1.54413993383661,1.15933917810211 | |phase1_expression=5.12476310735341,0,0,0,0,0.503637815735669,0.467225281191051,0,0,0,0,0,0,0,0,0,0,0,0,0,6.88850650223665,4.26951090163807,10.7091913546964,0,0,0,0,0.215471232685889,0.380046838912748,0.252030129759931,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0,0.782391344348039,0,0.219686182734472,0,0.139986421625363,1.43752564364972,0,0,0,0,0,0,15.3760510253294,24.8625760257855,14.5781222806421,0,0.889294796111139,0,0,0,2.69640099466564,3.45796474789399,2.38486108309499,1.4850653216486,1.89292465216244,31.992910253226,29.8172530284678,3.55223317723367,2.20444583341944,2.75765635983006,34.1359231098105,36.5185786923637,42.7026162452357,14.7712642257817,13.9061218275663,13.022834263919,24.0097379141188,38.8306200921859,38.0467636964257,67.4699460734699,60.792707701217,26.0959224155421,0.302904773332736,1.5870027622425,0,0.860423876981386,0,0.539703191637817,0,0.448026887097336,1.68533304158102,0,0,0,10.140726223921,0,0,0,0,0,0,0.79928715803342,0,0.593768556259299,3.29622120855658,4.87144765299426,3.68984795609694,5.87818298155228,5.40908052824242,0.753999547978053,0,0.433798070759735,0,0.647067399789637,0,0,3.72783522436244,8.49064311333487,18.431310199584,0.510914110417183,0,0,0,23.666921025962,14.640019290196,14.3245961408665,26.5951209894183,40.1473268008619,20.778804455956,25.7963608277735,1.01839363850316,0,0,2.10441855886474,2.99277018814219,1.14951052216736,2.52086981727489,3.76762044589288,5.23881043465224,5.76511741281824,5.43470002446427,6.98499100995342,0,0.945530400839096,1.40760899331159,0.657587197282725,1.11218899690239,1.74126083261083,1.23469281844766,0.995171334092466,0,0,0,0.207125772535502,0.234526059981096,0.180062061461015,0,0,0.154267112887378,0,0,0,0,0,0,0,0,0.134206418760372,15.3511662451813,11.1136981369627,0,0,1.2797295032114,2.55460339046482,2.44848176511977,3.02525286935014,2.00140239460383,3.23383564391351,0.949058123089023,0.823494773620054,1.75934646160189,1.59165177632921,2.14460495831032,0,1.08069024937347,1.39398891278057,0.379335801906163,1.82797620175566,0,0.407302655690628,0,0.49095073923223,0.252946148497029,0,0,0,1.1858105083486,0,0.196558995113203,0,0,0.241177159752417,0,0,0,0,0,0,0,0.252578877947112,0.179397413521912,0,0.184753190166605,0.37898282354097,0.162964976442026,0.169745085775188,0,0,0.238043640886014,0.195133647857799,0.315270288212382,0.221464689648775,0.159454768657487,0.163863314715738,0,0,0,0,0,0,20.871576698413,27.8963814089444,0,0,3.15508219416257,6.24701990874622,8.40151251157916,1.43381278771531,2.89638276307112,5.37845408498782,3.64329631507405,8.18316402151673,11.0680577825027,23.1351347823701,0.425820255624806,0.534196811001766,1.46598263418218,0,0,0.485561272309963,0.604647113929502,0.377210159511796,0,0.922305443831782,0.516856586336442,0,1.06949213515416,0.316036757935816,0,1.03135543248187,5.44703369206061,0.720244376125241,0.388076051348264,2.7863814554107,7.09360934569094,5.88617098086833,5.75921572107423,0.608929898229199,0,0,1.54369878638473,1.15420377059036,0.484393280087717,0.542816324353403,0.358117032009409,0.328281799490123,0.291480836629851,32.2640025498287,0,0.412773735926445,0,0.188368457004691,0,0,0,0.139951452323658,0.138199973804424,0,1.10717597753397,1.01659733563424,1.94409613479242,2.92723614420256,2.83871332870031,2.15782954215713,2.64491058321075,1.57053565190418,0.777689839750757,0,0,0,0,0,0.129159823477731,0.506868376472335,0,0.13020438484395,0.314578033277133,0.241584120826006,0.288030006257865,0,0.202725215290164,0.205421914329655,0,0.358053391334963,0,0,0.147689527174577,0.100966449948148,0,0.100826185136841,0,0,0,0.226730383615211,0,0,0,1.15913756419314,0,0.36630324853453,0,0,36.1441179274923,40.5086208126316,36.6653128601214,35.4017555627996,28.773465830367,37.769694869485,37.1262375127493,28.3702358031259,27.1885445390523,28.9945774581019,0,2.79317411380722,3.41467211508268,4.132814190161,2.72497111416377,2.20612210140017,5.11167473943715,4.32673620201678,3.53011130550997,6.31743029409494,6.33698249725599,7.35642731405697,5.89941497060259,6.97874161213075,7.40917549527411,5.23923060411381,5.79421629724277,7.33055037762079,7.41754621445952,7.35994600671987,4.4573002810104,7.0990322463735,7.39152188836695,5.23247099876383,6.7758753899038,6.34609559187574,3.10977553883713,5.26139422875686,7.74083448921412,2.80571135828869,5.45721083371201,5.1222330835293,4.09231043169689,5.26785260032284,4.05103883060397,6.74488560432454,4.21076895201735,4.72716318906256,4.20834330551455,1.54413993383661,1.15933917810211 | ||
|short_description=p1@Ncam2 | |short_description=p1@Ncam2 | ||
}} | }} |
Latest revision as of 18:44, 25 September 2015
Short description: | p1@Ncam2 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_1_at_Ncam2_5end |
Coexpression cluster: | MCL_coexpression_mm9:1 |
Association with transcript: | 50bp_to_ENSMUST00000037785, ENSMUST00000067602, NM_001113208, NM_010954, uc007zta.2, uc007ztb.2_5end |
EntrezGene: | Ncam2 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
neuron | 6.59e-17 | 33 |
neuronal stem cell | 6.59e-17 | 33 |
neuroblast | 6.59e-17 | 33 |
electrically signaling cell | 6.59e-17 | 33 |
CNS neuron (sensu Vertebrata) | 1.12e-13 | 23 |
neuroblast (sensu Vertebrata) | 1.12e-13 | 23 |
ectodermal cell | 2.80e-13 | 44 |
neurectodermal cell | 2.80e-13 | 44 |
neural cell | 9.69e-13 | 43 |
electrically responsive cell | 3.21e-12 | 39 |
electrically active cell | 3.21e-12 | 39 |
Ontology term | p-value | n |
---|---|---|
central nervous system | 8.42e-31 | 73 |
nervous system | 4.43e-30 | 75 |
ectoderm-derived structure | 1.35e-27 | 95 |
ectoderm | 1.35e-27 | 95 |
presumptive ectoderm | 1.35e-27 | 95 |
neurectoderm | 1.56e-25 | 64 |
neural plate | 1.56e-25 | 64 |
presumptive neural plate | 1.56e-25 | 64 |
regional part of nervous system | 3.00e-23 | 54 |
ecto-epithelium | 2.83e-22 | 73 |
neural tube | 1.53e-21 | 52 |
neural rod | 1.53e-21 | 52 |
future spinal cord | 1.53e-21 | 52 |
neural keel | 1.53e-21 | 52 |
gray matter | 2.41e-18 | 34 |
pre-chordal neural plate | 3.65e-18 | 49 |
brain | 1.66e-17 | 47 |
future brain | 1.66e-17 | 47 |
regional part of brain | 7.70e-17 | 46 |
structure with developmental contribution from neural crest | 4.80e-16 | 92 |
anterior neural tube | 9.14e-16 | 40 |
regional part of forebrain | 4.22e-15 | 39 |
forebrain | 4.22e-15 | 39 |
future forebrain | 4.22e-15 | 39 |
brain grey matter | 2.26e-14 | 29 |
regional part of telencephalon | 2.26e-14 | 29 |
telencephalon | 2.26e-14 | 29 |
occipital lobe | 3.23e-09 | 10 |
visual cortex | 3.23e-09 | 10 |
neocortex | 3.23e-09 | 10 |
cerebral cortex | 3.61e-09 | 21 |
cerebral hemisphere | 3.61e-09 | 21 |
pallium | 3.61e-09 | 21 |
regional part of cerebral cortex | 1.99e-08 | 17 |