FFCP PHASE1:Mm9::chr8:74249549..74249583,-: Difference between revisions
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{{FFCP|EntrezGene=74015|HGNC=|MCL_coexpression_id=3233|UniProt=Q8K285,D6RCG0|association_with_transcript=0bp_to_ENSMUST00000093444,ENSMUST00000136640,ENSMUST00000143699,NM_028715,NR_028267,uc009met.2,uc009mev.2_5end|description=CAGE_peak_2_at_Fcho1_5end|id=chr8:74249549..74249583,-|ontology_enrichment_celltype=CL:0000117!2.39e-10!23;CL:0000337!2.39e-10!23|ontology_enrichment_celltype_v019_2=CL:0000117,9.39e-11,23;CL:0000337,9.39e-11,23|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0007811!1.26e-16!86;UBERON:0001049!5.87e-16!52;UBERON:0005068!5.87e-16!52;UBERON:0006241!5.87e-16!52;UBERON:0007135!5.87e-16!52;UBERON:0000153!3.99e-15!94;UBERON:0000955!4.02e-15!50;UBERON:0006238!4.02e-15!50;UBERON:0002616!1.45e-14!49;UBERON:0002020!2.36e-14!34;UBERON:0000033!6.63e-14!63;UBERON:0003080!3.03e-13!40;UBERON:0001017!3.73e-13!73;UBERON:0005743!3.73e-13!73;UBERON:0002780!9.59e-13!39;UBERON:0001890!9.59e-13!39;UBERON:0006240!9.59e-13!39;UBERON:0002791!4.43e-12!29;UBERON:0003528!4.43e-12!29;UBERON:0001893!4.43e-12!29;UBERON:0000073!5.91e-12!75;UBERON:0001016!5.91e-12!75;UBERON:0003056!7.79e-12!49;UBERON:0002346!3.92e-10!71;UBERON:0003075!3.92e-10!71;UBERON:0007284!3.92e-10!71;UBERON:0004121!9.51e-09!102;UBERON:0000924!9.51e-09!102;UBERON:0006601!9.51e-09!102;UBERON:0000064!1.89e-08!99;UBERON:0000956!3.07e-08!21;UBERON:0001869!3.07e-08!21;UBERON:0000203!3.07e-08!21;UBERON:0002021!2.09e-07!10;UBERON:0000411!2.09e-07!10;UBERON:0001950!2.09e-07!10;UBERON:0002619!6.27e-07!17|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.32e-18,54;UBERON:0001049,7.22e-17,52;UBERON:0005068,7.22e-17,52;UBERON:0006241,7.22e-17,52;UBERON:0007135,7.22e-17,52;UBERON:0002020,6.21e-15,34;UBERON:0000955,1.24e-14,47;UBERON:0006238,1.24e-14,47;UBERON:0002346,2.28e-14,64;UBERON:0003075,2.28e-14,64;UBERON:0007284,2.28e-14,64;UBERON:0010371,2.34e-14,73;UBERON:0002616,4.63e-14,46;UBERON:0003080,8.95e-14,40;UBERON:0002780,2.99e-13,39;UBERON:0001890,2.99e-13,39;UBERON:0006240,2.99e-13,39;UBERON:0001017,1.13e-12,73;UBERON:0003528,1.48e-12,29;UBERON:0002791,1.48e-12,29;UBERON:0001893,1.48e-12,29;UBERON:0003056,2.67e-12,49;UBERON:0001016,1.44e-11,75;UBERON:0004121,1.36e-10,95;UBERON:0000924,1.36e-10,95;UBERON:0006601,1.36e-10,95;UBERON:0000956,1.55e-08,21;UBERON:0001869,1.55e-08,21;UBERON:0000203,1.55e-08,21;UBERON:0002021,1.12e-07,10;UBERON:0000411,1.12e-07,10;UBERON:0001950,1.12e-07,10;UBERON:0002619,3.62e-07,17|phase1_expression=5.44506080156299,1.04692622291808,0.909998478779072,0,0.500895729946347,0.671517087647559,2.10251376535973,9.03863264091034,0.281577444303333,0,0.513653904676515,0.398860794976682,7.19043065711064,3.05971408466491,8.32774404539157,10.9336644390506,11.1929900500503,8.3597473819933,8.36398044995006,7.63901373236454,6.03807360072595,23.4326644834089,19.8511839745591,1.75991665072747,1.14704640533585,0.57423196411502,1.7230479846363,0.646413698057667,0.190023419456374,0.504060259519861,0,1.27006134691926,3.07532393792285,0,0.577703239502549,0.831173226792462,0.204169356262369,2.09265815368454,1.5626706890476,2.61761871986899,1.17646297606203,2.73218193983378,1.45653105909346,0,0.101376931219515,0,0,1.52617609466313,0.439372365468944,0.388859798148567,0.55994568650145,0,7.55021727259814,6.5282592781021,6.04968838456435,0.257259436035947,0,0,16.589949790487,19.5726662330652,13.9442908771359,0,0,0.899899717281399,0,0,0.898800331555214,0.384218305321555,9.02099627083756,9.72042755988173,6.09942387919008,18.2816630018434,17.8903518170807,8.08439274818697,12.4599112323707,11.9498442259303,11.0115880999389,15.5778552463929,14.1318010595744,16.6176722540044,18.3890163640843,10.939180781692,17.3093459380856,10.1297269805702,16.0438160165651,8.2496003932627,16.7998583342941,15.8439528951505,0.454357159999104,0.151143120213571,0.289864488701678,0,0,0,0,0,2.80888840263504,0,0,0,4.64783285263046,0,0,0,0.216491041011214,0.760079596425296,0.505524445014783,0.79928715803342,9.58070169494535,0.593768556259299,0.693941307064543,0.304465478312141,0.461230994512117,0.452167921657868,0.587943535678524,0.376999773989026,0.247194967734374,0.144599356919912,14.153768831198,1.45590164952668,11.4837589599405,10.1823803158397,1.86391761218122,9.9545470983926,9.00620839297857,2.04365644166873,8.98613433794402,12.5979573508616,7.37007317023775,16.926342252745,25.6200337578431,29.0261553380717,25.7259993884569,37.3344567702283,14.7529511637288,30.5013574567384,0.712875546952214,6.84238338355512,1.0108910337347,1.47309299120532,1.30120442962704,1.37941262660084,2.34080768746954,3.31550599238573,3.60593445502038,2.69038812598185,2.81105173679186,2.32833033665114,0.215567992932842,0.189106080167819,1.93546236580344,0.876782929710299,0.556094498451196,6.268538997399,5.96768195583036,2.18937693500343,8.42655824775882,8.4924809347856,8.24074148247219,0.621377317606506,0.234526059981096,0.36012412292203,0.23674473558521,0.196764231747404,0.154267112887378,0,0.536546802799238,0.934122738937356,0.16455984991348,0.3283349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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=74015 | |||
|HGNC= | |||
|MCL_coexpression_id=3233 | |||
|TSSclassifier=NA | |||
|UniProt=Q8K285,D6RCG0 | |||
|association_with_transcript=0bp_to_ENSMUST00000093444,ENSMUST00000136640,ENSMUST00000143699,NM_028715,NR_028267,uc009met.2,uc009mev.2_5end | |||
|cluster_id=chr8:74249549..74249583,- | |||
|description=CAGE_peak_2_at_Fcho1_5end | |||
|id=chr8:74249549..74249583,- | |||
|ontology_enrichment_celltype=CL:0000117!2.39e-10!23;CL:0000337!2.39e-10!23 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,9.39e-11,23;CL:0000337,9.39e-11,23 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0007811!1.26e-16!86;UBERON:0001049!5.87e-16!52;UBERON:0005068!5.87e-16!52;UBERON:0006241!5.87e-16!52;UBERON:0007135!5.87e-16!52;UBERON:0000153!3.99e-15!94;UBERON:0000955!4.02e-15!50;UBERON:0006238!4.02e-15!50;UBERON:0002616!1.45e-14!49;UBERON:0002020!2.36e-14!34;UBERON:0000033!6.63e-14!63;UBERON:0003080!3.03e-13!40;UBERON:0001017!3.73e-13!73;UBERON:0005743!3.73e-13!73;UBERON:0002780!9.59e-13!39;UBERON:0001890!9.59e-13!39;UBERON:0006240!9.59e-13!39;UBERON:0002791!4.43e-12!29;UBERON:0003528!4.43e-12!29;UBERON:0001893!4.43e-12!29;UBERON:0000073!5.91e-12!75;UBERON:0001016!5.91e-12!75;UBERON:0003056!7.79e-12!49;UBERON:0002346!3.92e-10!71;UBERON:0003075!3.92e-10!71;UBERON:0007284!3.92e-10!71;UBERON:0004121!9.51e-09!102;UBERON:0000924!9.51e-09!102;UBERON:0006601!9.51e-09!102;UBERON:0000064!1.89e-08!99;UBERON:0000956!3.07e-08!21;UBERON:0001869!3.07e-08!21;UBERON:0000203!3.07e-08!21;UBERON:0002021!2.09e-07!10;UBERON:0000411!2.09e-07!10;UBERON:0001950!2.09e-07!10;UBERON:0002619!6.27e-07!17 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0000073,7.32e-18,54;UBERON:0001049,7.22e-17,52;UBERON:0005068,7.22e-17,52;UBERON:0006241,7.22e-17,52;UBERON:0007135,7.22e-17,52;UBERON:0002020,6.21e-15,34;UBERON:0000955,1.24e-14,47;UBERON:0006238,1.24e-14,47;UBERON:0002346,2.28e-14,64;UBERON:0003075,2.28e-14,64;UBERON:0007284,2.28e-14,64;UBERON:0010371,2.34e-14,73;UBERON:0002616,4.63e-14,46;UBERON:0003080,8.95e-14,40;UBERON:0002780,2.99e-13,39;UBERON:0001890,2.99e-13,39;UBERON:0006240,2.99e-13,39;UBERON:0001017,1.13e-12,73;UBERON:0003528,1.48e-12,29;UBERON:0002791,1.48e-12,29;UBERON:0001893,1.48e-12,29;UBERON:0003056,2.67e-12,49;UBERON:0001016,1.44e-11,75;UBERON:0004121,1.36e-10,95;UBERON:0000924,1.36e-10,95;UBERON:0006601,1.36e-10,95;UBERON:0000956,1.55e-08,21;UBERON:0001869,1.55e-08,21;UBERON:0000203,1.55e-08,21;UBERON:0002021,1.12e-07,10;UBERON:0000411,1.12e-07,10;UBERON:0001950,1.12e-07,10;UBERON:0002619,3.62e-07,17 | |||
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| |||
|short_description=p2@Fcho1 | |||
}} |
Latest revision as of 18:38, 25 September 2015
Short description: | p2@Fcho1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_2_at_Fcho1_5end |
Coexpression cluster: | MCL_coexpression_mm9:3233 |
Association with transcript: | 0bp_to_ENSMUST00000093444, ENSMUST00000136640, ENSMUST00000143699, NM_028715, NR_028267, uc009met.2, uc009mev.2_5end |
EntrezGene: | Fcho1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 9.39e-11 | 23 |
neuroblast (sensu Vertebrata) | 9.39e-11 | 23 |
Ontology term | p-value | n |
---|---|---|
regional part of nervous system | 7.32e-18 | 54 |
neural tube | 7.22e-17 | 52 |
neural rod | 7.22e-17 | 52 |
future spinal cord | 7.22e-17 | 52 |
neural keel | 7.22e-17 | 52 |
gray matter | 6.21e-15 | 34 |
brain | 1.24e-14 | 47 |
future brain | 1.24e-14 | 47 |
neurectoderm | 2.28e-14 | 64 |
neural plate | 2.28e-14 | 64 |
presumptive neural plate | 2.28e-14 | 64 |
ecto-epithelium | 2.34e-14 | 73 |
regional part of brain | 4.63e-14 | 46 |
anterior neural tube | 8.95e-14 | 40 |
regional part of forebrain | 2.99e-13 | 39 |
forebrain | 2.99e-13 | 39 |
future forebrain | 2.99e-13 | 39 |
central nervous system | 1.13e-12 | 73 |
brain grey matter | 1.48e-12 | 29 |
regional part of telencephalon | 1.48e-12 | 29 |
telencephalon | 1.48e-12 | 29 |
pre-chordal neural plate | 2.67e-12 | 49 |
nervous system | 1.44e-11 | 75 |
ectoderm-derived structure | 1.36e-10 | 95 |
ectoderm | 1.36e-10 | 95 |
presumptive ectoderm | 1.36e-10 | 95 |
cerebral cortex | 1.55e-08 | 21 |
cerebral hemisphere | 1.55e-08 | 21 |
pallium | 1.55e-08 | 21 |
occipital lobe | 1.12e-07 | 10 |
visual cortex | 1.12e-07 | 10 |
neocortex | 1.12e-07 | 10 |
regional part of cerebral cortex | 3.62e-07 | 17 |