FFCP PHASE1:Mm9::chr19:40588323..40588370,-: Difference between revisions
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{{FFCP|EntrezGene=20411|HGNC=|MCL_coexpression_id=482|UniProt=Q62417|association_with_transcript=-21bp_to_NM_009166,uc008hkq.1,uc008hkr.1,uc008hks.1,uc008hkt.1_5end|description=CAGE_peak_4_at_Sorbs1_5end|id=chr19:40588323..40588370,-|ontology_enrichment_celltype=CL:0000117!3.80e-13!23;CL:0000337!3.80e-13!23;CL:0000540!9.93e-07!33;CL:0000047!9.93e-07!33;CL:0000031!9.93e-07!33;CL:0000404!9.93e-07!33|ontology_enrichment_celltype_v019_2=CL:0000117,2.90e-20,23;CL:0000337,2.90e-20,23;CL:0000540,7.33e-12,33;CL:0000047,7.33e-12,33;CL:0000031,7.33e-12,33;CL:0000404,7.33e-12,33;CL:0000393,5.62e-09,39;CL:0000211,5.62e-09,39;CL:0002609,1.04e-08,6;CL:0002319,1.55e-07,43;CL:0000221,3.20e-07,44;CL:0000133,3.20e-07,44|ontology_enrichment_disease=|ontology_enrichment_disease_v019_2=|ontology_enrichment_uberon=UBERON:0001049!2.31e-21!52;UBERON:0005068!2.31e-21!52;UBERON:0006241!2.31e-21!52;UBERON:0007135!2.31e-21!52;UBERON:0000955!6.62e-21!50;UBERON:0006238!6.62e-21!50;UBERON:0002616!3.29e-20!49;UBERON:0002020!2.76e-19!34;UBERON:0007811!9.49e-18!86;UBERON:0000033!2.29e-17!63;UBERON:0002791!2.45e-17!29;UBERON:0003528!2.45e-17!29;UBERON:0001893!2.45e-17!29;UBERON:0000153!5.93e-17!94;UBERON:0001017!2.09e-16!73;UBERON:0005743!2.09e-16!73;UBERON:0003080!2.11e-16!40;UBERON:0002780!7.41e-16!39;UBERON:0001890!7.41e-16!39;UBERON:0006240!7.41e-16!39;UBERON:0002346!9.91e-16!71;UBERON:0003075!9.91e-16!71;UBERON:0007284!9.91e-16!71;UBERON:0000073!1.40e-15!75;UBERON:0001016!1.40e-15!75;UBERON:0003056!2.41e-15!49;UBERON:0000956!9.36e-13!21;UBERON:0001869!9.36e-13!21;UBERON:0000203!9.36e-13!21;UBERON:0004121!2.02e-10!102;UBERON:0000924!2.02e-10!102;UBERON:0006601!2.02e-10!102;UBERON:0002619!5.38e-10!17;UBERON:0000477!9.55e-08!154;UBERON:0000064!1.05e-07!99;UBERON:0002021!2.99e-07!10;UBERON:0000411!2.99e-07!10;UBERON:0001950!2.99e-07!10;UBERON:0000025!4.78e-07!114|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.38e-29,34;UBERON:0000073,5.85e-29,54;UBERON:0003528,1.94e-27,29;UBERON:0002791,1.94e-27,29;UBERON:0001893,1.94e-27,29;UBERON:0001049,2.90e-27,52;UBERON:0005068,2.90e-27,52;UBERON:0006241,2.90e-27,52;UBERON:0007135,2.90e-27,52;UBERON:0000955,6.26e-25,47;UBERON:0006238,6.26e-25,47;UBERON:0001017,2.48e-24,73;UBERON:0002616,7.95e-24,46;UBERON:0001016,2.91e-23,75;UBERON:0002346,8.78e-23,64;UBERON:0003075,8.78e-23,64;UBERON:0007284,8.78e-23,64;UBERON:0003080,3.10e-22,40;UBERON:0002780,2.50e-21,39;UBERON:0001890,2.50e-21,39;UBERON:0006240,2.50e-21,39;UBERON:0000956,1.83e-19,21;UBERON:0001869,1.83e-19,21;UBERON:0000203,1.83e-19,21;UBERON:0003056,2.05e-19,49;UBERON:0010371,3.19e-18,73;UBERON:0004121,1.50e-17,95;UBERON:0000924,1.50e-17,95;UBERON:0006601,1.50e-17,95;UBERON:0002619,1.02e-14,17;UBERON:0010314,1.12e-11,92;UBERON:0002021,1.72e-11,10;UBERON:0000411,1.72e-11,10;UBERON:0001950,1.72e-11,10;UBERON:0002420,5.35e-09,8;UBERON:0007245,5.35e-09,8;UBERON:0010009,5.35e-09,8;UBERON:0010011,5.35e-09,8;UBERON:0000454,5.35e-09,8|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0.387369970324729,0.281577444303333,0.468129052643987,0.171217968225505,0.398860794976682,0.342401459862411,0.699363219351979,0.333109761815663,0.404950534779652,0,0.315462165358238,0,0,1.7008658030214,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0.504060259519861,0.221730510655305,0,1.23012957516914,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.183546752161682,0.782391344348039,0.65407546914134,0.219686182734472,0.777719596297134,0,0,0.167782606057736,0,0.336093799142464,0.514518872071894,0,0.515672092277442,4.04632921719196,2.64495489636016,1.90149421051854,0,0,0,0,0,0,0.384218305321555,12.9612015385597,11.340498819862,9.46462326081219,1.71390590642282,0.883474163806454,12.2490799214954,12.8432931164437,9.19218786610021,3.30347642998166,2.29837208553338,2.91852413186863,3.16527090552465,2.10421580285542,3.12548022334056,3.07101298901519,2.8138130501584,3.0559649555362,2.06240009831567,2.42031857358475,3.35519002485541,0.075726193333184,0.151143120213571,0.579728977403356,0,0,0,0.649776417447669,0,0.280888840263504,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0.148442139064825,0.173485326766136,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0.494389935468748,0.289198713839823,0,0.485300549842228,0,0,0,2.63502717310392,1.46612694769419,0,0,0,0,2.99581278809645,15.0975198930147,13.1937069718508,7.30062144807561,4.60287823194595,3.53239675751252,5.19172041816825,1.32391173005411,0.373220911830279,0.252722758433675,0.420883711772948,0.390361328888111,0,0,0.452114453507145,1.56483948048054,0.896796041993948,1.12442069471675,1.29351685369508,0,0.567318240503458,0.351902248327898,0.876782929710299,0,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,0,0,0.36012412292203,0.23674473558521,0.393528463494808,0.308534225774757,0.465067889500816,0,0.583826711835847,0.329119699826961,0.492502392237286,0.56748166682099,0.43859996227599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| {{FFCP | ||
|DHSsupport=NA | |||
|DPIdataset=NA | |||
|EntrezGene=20411 | |||
|HGNC= | |||
|MCL_coexpression_id=482 | |||
|TSSclassifier=NA | |||
|UniProt=Q62417 | |||
|association_with_transcript=-21bp_to_NM_009166,uc008hkq.1,uc008hkr.1,uc008hks.1,uc008hkt.1_5end | |||
|cluster_id=chr19:40588323..40588370,- | |||
|description=CAGE_peak_4_at_Sorbs1_5end | |||
|id=chr19:40588323..40588370,- | |||
|ontology_enrichment_celltype=CL:0000117!3.80e-13!23;CL:0000337!3.80e-13!23;CL:0000540!9.93e-07!33;CL:0000047!9.93e-07!33;CL:0000031!9.93e-07!33;CL:0000404!9.93e-07!33 | |||
|ontology_enrichment_celltype_v019_2=CL:0000117,2.90e-20,23;CL:0000337,2.90e-20,23;CL:0000540,7.33e-12,33;CL:0000047,7.33e-12,33;CL:0000031,7.33e-12,33;CL:0000404,7.33e-12,33;CL:0000393,5.62e-09,39;CL:0000211,5.62e-09,39;CL:0002609,1.04e-08,6;CL:0002319,1.55e-07,43;CL:0000221,3.20e-07,44;CL:0000133,3.20e-07,44 | |||
|ontology_enrichment_disease= | |||
|ontology_enrichment_disease_v019_2= | |||
|ontology_enrichment_uberon=UBERON:0001049!2.31e-21!52;UBERON:0005068!2.31e-21!52;UBERON:0006241!2.31e-21!52;UBERON:0007135!2.31e-21!52;UBERON:0000955!6.62e-21!50;UBERON:0006238!6.62e-21!50;UBERON:0002616!3.29e-20!49;UBERON:0002020!2.76e-19!34;UBERON:0007811!9.49e-18!86;UBERON:0000033!2.29e-17!63;UBERON:0002791!2.45e-17!29;UBERON:0003528!2.45e-17!29;UBERON:0001893!2.45e-17!29;UBERON:0000153!5.93e-17!94;UBERON:0001017!2.09e-16!73;UBERON:0005743!2.09e-16!73;UBERON:0003080!2.11e-16!40;UBERON:0002780!7.41e-16!39;UBERON:0001890!7.41e-16!39;UBERON:0006240!7.41e-16!39;UBERON:0002346!9.91e-16!71;UBERON:0003075!9.91e-16!71;UBERON:0007284!9.91e-16!71;UBERON:0000073!1.40e-15!75;UBERON:0001016!1.40e-15!75;UBERON:0003056!2.41e-15!49;UBERON:0000956!9.36e-13!21;UBERON:0001869!9.36e-13!21;UBERON:0000203!9.36e-13!21;UBERON:0004121!2.02e-10!102;UBERON:0000924!2.02e-10!102;UBERON:0006601!2.02e-10!102;UBERON:0002619!5.38e-10!17;UBERON:0000477!9.55e-08!154;UBERON:0000064!1.05e-07!99;UBERON:0002021!2.99e-07!10;UBERON:0000411!2.99e-07!10;UBERON:0001950!2.99e-07!10;UBERON:0000025!4.78e-07!114 | |||
|ontology_enrichment_uberon_v019_2=UBERON:0002020,2.38e-29,34;UBERON:0000073,5.85e-29,54;UBERON:0003528,1.94e-27,29;UBERON:0002791,1.94e-27,29;UBERON:0001893,1.94e-27,29;UBERON:0001049,2.90e-27,52;UBERON:0005068,2.90e-27,52;UBERON:0006241,2.90e-27,52;UBERON:0007135,2.90e-27,52;UBERON:0000955,6.26e-25,47;UBERON:0006238,6.26e-25,47;UBERON:0001017,2.48e-24,73;UBERON:0002616,7.95e-24,46;UBERON:0001016,2.91e-23,75;UBERON:0002346,8.78e-23,64;UBERON:0003075,8.78e-23,64;UBERON:0007284,8.78e-23,64;UBERON:0003080,3.10e-22,40;UBERON:0002780,2.50e-21,39;UBERON:0001890,2.50e-21,39;UBERON:0006240,2.50e-21,39;UBERON:0000956,1.83e-19,21;UBERON:0001869,1.83e-19,21;UBERON:0000203,1.83e-19,21;UBERON:0003056,2.05e-19,49;UBERON:0010371,3.19e-18,73;UBERON:0004121,1.50e-17,95;UBERON:0000924,1.50e-17,95;UBERON:0006601,1.50e-17,95;UBERON:0002619,1.02e-14,17;UBERON:0010314,1.12e-11,92;UBERON:0002021,1.72e-11,10;UBERON:0000411,1.72e-11,10;UBERON:0001950,1.72e-11,10;UBERON:0002420,5.35e-09,8;UBERON:0007245,5.35e-09,8;UBERON:0010009,5.35e-09,8;UBERON:0010011,5.35e-09,8;UBERON:0000454,5.35e-09,8 | |||
|phase1_expression=0.320297694209588,0,0,0,0,0.16787927191189,0,0.387369970324729,0.281577444303333,0.468129052643987,0.171217968225505,0.398860794976682,0.342401459862411,0.699363219351979,0.333109761815663,0.404950534779652,0,0.315462165358238,0,0,1.7008658030214,0.0992909512008853,0,0.159992422793407,0,0,0,0,0,0.504060259519861,0.221730510655305,0,1.23012957516914,0,0.288851619751275,0,0.204169356262369,0,0,0,0,0,0,0.251793635951155,0.506884656097573,0.183546752161682,0.782391344348039,0.65407546914134,0.219686182734472,0.777719596297134,0,0,0.167782606057736,0,0.336093799142464,0.514518872071894,0,0.515672092277442,4.04632921719196,2.64495489636016,1.90149421051854,0,0,0,0,0,0,0.384218305321555,12.9612015385597,11.340498819862,9.46462326081219,1.71390590642282,0.883474163806454,12.2490799214954,12.8432931164437,9.19218786610021,3.30347642998166,2.29837208553338,2.91852413186863,3.16527090552465,2.10421580285542,3.12548022334056,3.07101298901519,2.8138130501584,3.0559649555362,2.06240009831567,2.42031857358475,3.35519002485541,0.075726193333184,0.151143120213571,0.579728977403356,0,0,0,0.649776417447669,0,0.280888840263504,0.170430322578058,0,0.35333957451034,0.14084341977668,0,0,0,0,0,0,0.11418387971906,0.776813650941515,0.148442139064825,0.173485326766136,0,0.230615497256059,0.150722640552623,0.117588707135705,0.125666591329675,0.494389935468748,0.289198713839823,0,0.485300549842228,0,0,0,2.63502717310392,1.46612694769419,0,0,0,0,2.99581278809645,15.0975198930147,13.1937069718508,7.30062144807561,4.60287823194595,3.53239675751252,5.19172041816825,1.32391173005411,0.373220911830279,0.252722758433675,0.420883711772948,0.390361328888111,0,0,0.452114453507145,1.56483948048054,0.896796041993948,1.12442069471675,1.29351685369508,0,0.567318240503458,0.351902248327898,0.876782929710299,0,0.696504333044333,0.205782136407943,0.199034266818493,0,0,0,0,0,0.36012412292203,0.23674473558521,0.393528463494808,0.308534225774757,0.465067889500816,0,0.583826711835847,0.329119699826961,0.492502392237286,0.56748166682099,0.438599962275997,0.439100230582101,0.402619256281115,6.9395683026162,9.05560588937703,0,0,0,0,0.38660238396628,0.201683524623343,0.444756087689741,0.190225626112559,0,0.329397909448022,0.754005626400808,0.795825888164603,0.19496408711912,0,0.432276099749388,0.199141273254367,0,0.114248512609729,1.1270773567308,0,0.387904974335251,0.350679099451593,0.379419222745544,0.147610147979602,0,0.616985819609003,0,0.166845105716094,0,0.674586337154561,0,0,0,0,0,0.274561413188081,0,0.372140947668503,0,0.505157755894224,0.179397413521912,0,0.369506380333209,0.37898282354097,0.488894929326078,0.169745085775188,0,0,0,0,0.788175720530955,0.221464689648775,0.159454768657487,0.655453258862952,0,0.144649058581512,0,0,0,0,2.72936002979246,3.39913891117389,0,0.252470927204373,0,0.390438744296638,0.215423397732799,0,0,0,0,0.292255857911312,0,6.42642632843614,0.141940085208269,0.534196811001766,0.488660878060728,0.494910368917606,0,0.242780636154981,0,0,0.295301892880773,0,0.258428293168221,0,0,0.316036757935816,0,0,0.680879211507576,0.18006109403131,0.258717367565509,0,0.354680467284547,0.178368817602071,0.987294123612726,0.913394847343798,0.23467170806371,0.42366414172764,0.441056796109924,0.16488625294148,0.161464426695906,0.784068024066026,0.238744688006273,0.164140899745061,0.291480836629851,4.45020724825223,0.170870880797853,0.82554747185289,0.370389054739423,0.376736914009382,0.27338845544205,0.457556346413045,0,0.139951452323658,0,0.954670618015114,0.316335993581135,0.203319467126849,0.324016022465404,0,0.655087691238533,0.269728692769641,0.495920734352016,0.523511883968059,0,0,0,0.149516546043979,0.330916980914195,0,0.387479470433193,0,0.234714477291508,0.2604087696879,0.419437377702843,0.483168241652012,0.576060012515731,2.21207784439725,0.202725215290164,0.102710957164827,0.129920822977795,0.179026695667481,0.79472541912506,2.16351809135944,2.51072196196781,2.92802704849628,2.89585865288999,2.72230699869469,2.82627854145282,2.21287235772758,2.10378423926824,0,0.221985953374065,0.0897138566094757,0,0.579568782096571,0,0.549454872801795,0.643105137237198,0,2.25900737046827,3.22227665555024,5.15605962095457,4.98374228796694,4.11049511862385,3.7769694869485,4.72515750162264,5.40385443869065,4.53142408984205,4.65984280576638,0,1.19707462020309,0.853668028770671,2.18796045361465,0.628839487883947,1.2869045591501,1.33348036680969,0.824140228955577,1.92551525755089,0.252697211763798,1.52087579934144,1.88626341386076,1.49826411951812,1.6646539625266,2.01024141344646,0.952587382566147,1.27472758539341,1.54327376370964,1.23625770240992,0.883193520806384,0.342869252385415,1.59728225543404,2.14592570952589,1.59881058295561,2.07040636913727,1.69229215783353,1.46342378298218,1.05227884575137,1.62964936615034,1.68342681497322,1.89816028998679,0.985044823755635,2.45538625901814,2.47898945897546,0.771626443924566,2.74791635731741,1.16965804222704,1.50409737833809,0.765153328275374,0,0.463735671240843 | |||
|short_description=p4@Sorbs1 | |||
}} |
Latest revision as of 17:53, 25 September 2015
Short description: | p4@Sorbs1 |
---|---|
Species: | Mouse (Mus musculus) |
DPI dataset: | NA |
TSS-like-by-RIKEN-classifier(Yes/No): | NA |
DHS support(Yes/No): | NA |
Description: | CAGE_peak_4_at_Sorbs1_5end |
Coexpression cluster: | MCL_coexpression_mm9:482 |
Association with transcript: | -21bp_to_NM_009166, uc008hkq.1, uc008hkr.1, uc008hks.1, uc008hkt.1_5end |
EntrezGene: | Sorbs1 |
Link to Zenbu: | ZENBU |
View on UCSC genome browser
CAGE Expression
- Click each plot point to find sample in table
Ontology-based sample term enrichment analysis<b>Summary:</b>This analysis has been performed by utilizing wilcoxon rank sum test.When the number of associated cells/tissues are > n , randomly sampled n cells/tissues are used for P value calculation with rank sum test. this process are repeated several times, and the P values are averaged on the log space <br><b>Analyst:</b> Hideya Kawaji<br><br>link to source dataset<br>data
Ontology term | p-value | n |
---|---|---|
CNS neuron (sensu Vertebrata) | 2.90e-20 | 23 |
neuroblast (sensu Vertebrata) | 2.90e-20 | 23 |
neuron | 7.33e-12 | 33 |
neuronal stem cell | 7.33e-12 | 33 |
neuroblast | 7.33e-12 | 33 |
electrically signaling cell | 7.33e-12 | 33 |
electrically responsive cell | 5.62e-09 | 39 |
electrically active cell | 5.62e-09 | 39 |
neuron of cerebral cortex | 1.04e-08 | 6 |
neural cell | 1.55e-07 | 43 |
ectodermal cell | 3.20e-07 | 44 |
neurectodermal cell | 3.20e-07 | 44 |